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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0368600 |
| Transcript ID | LotjaGi3g1v0368600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-responsive transcription factor; TAIR: AT5G11590.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3; TrEMBL-Plants: tr|A0A0B2P988|A0A0B2P988_GLYSO Dehydration-responsive element-binding protein 3; Found in the gene: LotjaGi3g1v0368600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75525583..75527384) extracted from Lotus japonicus Gifu genome v1.2.
TAGAGCTCATATGAATATAAATAGATCAATTCGAGATAGATATTGAAGAAAAAACACAAAAAGTTGCTACTATTTTGCTA TTTTTTTATATACATTATTGGTAGGTCAAGTGTCGTTATATGAATGAGCGTTTCCTTCACTACAAAAGGACTTAGGCATA GAGTGTGCTACTGTGCTTGCCCCAATCATCCCCTAGCTATCTCTCTACTCTACTTACTGTGTTCTGATTCCTCTATATTT GCTCTCTGCTCCCTACATTCTTCTCCACTCCACAACACAACACATTCCAACAACTACAATTTTTTACTAATTTCCCAATG ACACTAACAAACCCTTCTGAAACATCCACCACCGCCACAACCACCACCACTACCACCACCTCCTCCTCCACATCTTCCCC ACAATCACCCTCACATTCCCTCCACAAAACAGAGACCCCTCAAAAACAGAGCACCACCCAAAAACAGAGCACCCGCAAGA GACCCAGAGACTGCAGCGAGCACCGTGTCTATCACGGCGTCAGAAAGCGCAACTGGGGCAAATGGGTATCGGAAATCCGT GAGCCACGGAAGAAATCACGCATCTGGCTCGGCTCCTTCGACACCCCTGAAAAGGCCGCTAGAGCCCACGACGTCGCGGC TCTCACCATCAAGGGCCCCTCCGCCATCCTCAACTTCCCCCACATCGCCGACATGCTCCCCAAACCCGCCACGTCATCCC CGCACGACATCCAAGTCGCAGCTTCAGCTGCAGCCGCCATGGTTGACTTCGACACTACGACTTCTCCTCCATCGTCTCTG TCTTCTTCAGAGTCCTCAGAGGAGCTGAGTGAGATTGTTGAGCTTCCGAAGATTGAAGACTGGGTGGATAATTCCAGAGA TGAGTTCATTTTGGTTGATTTGGTAGAAAGTTGGGTGTATCCTCCATCAATGGGGTTAGAGGGAATCGAGTTCTGCGCTG CTTTTTCTGAGGAATATTTTGCAGAACAGAGTTTTATTGGAGGAGTAGATTACTCTGAGTCTGAGATTGAGATACCCATT TGGGATTGATTCCAATTTGACTTTTGGCACTTACATTACAAACACATCCTCTTCAATTCCCAATATGAGAGGTTAATTAA CATTAGCATAGTGGTATCATCAATGGTGTTTGGCTATTTTTGCTGTCACTGGTCCTGGGGTCAGATCCTTGGGCATTTAG TGTAATATATATTGTATACTATATTGTATTCTATATATACATTCCTAACTACTTTGGCAACTCCAATTAAAACCAGGTCA CTTCTCTCTCTATGCATTGTTTTCTTTTGTTTCTGTTTGTTTATGAAGGTATTCATATAGGAAGCAATAGTCATCAAACT AATTTTTCCGAGGATTTTACATTAAATTTATATGTATTTTGTAATTAATATTTTTCCATATAGACTCACGTAGATCAAAT TTTTGACTAAATGTTTAAAGAATTTAGATATCTACTGTATTGTTTTGCATAGTTTTTATTATCTTTCTCTCTCATCGCTA GAAATGAAAAATGTGAAATGTCACATTAGTAAGTTTCTACCACATTGCATTAGTGTAACTTTTACTTTGTGGTTGATATA CTTCATAAAAATGACTTCATTATCAGTAAAATCCCTTATAATGTAGCTTTTAATTAAGTTTAATGACGTTGTGACATATG GAATAAGACTTTTGTTATTGTTTTTTTTTTTTTGAACAGACTTTTGTTATTGTTATTAGTTGATATTTCTTGTAAGATCA TTTGAGAATATTCTAAAAGATCCTGCAAGGGCTTGATTTGGG
CDS sequence (LotjaGi3g1v0368600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACTAACAAACCCTTCTGAAACATCCACCACCGCCACAACCACCACCACTACCACCACCTCCTCCTCCACATCTTC CCCACAATCACCCTCACATTCCCTCCACAAAACAGAGACCCCTCAAAAACAGAGCACCACCCAAAAACAGAGCACCCGCA AGAGACCCAGAGACTGCAGCGAGCACCGTGTCTATCACGGCGTCAGAAAGCGCAACTGGGGCAAATGGGTATCGGAAATC CGTGAGCCACGGAAGAAATCACGCATCTGGCTCGGCTCCTTCGACACCCCTGAAAAGGCCGCTAGAGCCCACGACGTCGC GGCTCTCACCATCAAGGGCCCCTCCGCCATCCTCAACTTCCCCCACATCGCCGACATGCTCCCCAAACCCGCCACGTCAT CCCCGCACGACATCCAAGTCGCAGCTTCAGCTGCAGCCGCCATGGTTGACTTCGACACTACGACTTCTCCTCCATCGTCT CTGTCTTCTTCAGAGTCCTCAGAGGAGCTGAGTGAGATTGTTGAGCTTCCGAAGATTGAAGACTGGGTGGATAATTCCAG AGATGAGTTCATTTTGGTTGATTTGGTAGAAAGTTGGGTGTATCCTCCATCAATGGGGTTAGAGGGAATCGAGTTCTGCG CTGCTTTTTCTGAGGAATATTTTGCAGAACAGAGTTTTATTGGAGGAGTAGATTACTCTGAGTCTGAGATTGAGATACCC ATTTGGGATTGA
Protein sequence (LotjaGi3g1v0368600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLTNPSETSTTATTTTTTTTSSSTSSPQSPSHSLHKTETPQKQSTTQKQSTRKRPRDCSEHRVYHGVRKRNWGKWVSEI REPRKKSRIWLGSFDTPEKAARAHDVAALTIKGPSAILNFPHIADMLPKPATSSPHDIQVAASAAAAMVDFDTTTSPPSS LSSSESSEELSEIVELPKIEDWVDNSRDEFILVDLVESWVYPPSMGLEGIEFCAAFSEEYFAEQSFIGGVDYSESEIEIP IWD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| MobiDBLite | 1 | 63 | 63 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 34 | 34 | - | – | |
| PANTHER | 15 | 243 | 229 | 1.2E-86 | – | |
| PANTHER | 15 | 243 | 229 | 1.2E-86 | – | |
| Gene3D | 63 | 123 | 61 | 2.3E-29 | ||
| Pfam | 64 | 113 | 50 | 2.0E-11 | ||
| ProSiteProfiles | 64 | 121 | 58 | 22.879 | ||
| SMART | 64 | 127 | 64 | 1.5E-33 | ||
| SUPERFAMILY | 64 | 122 | 59 | 3.66E-21 | ||
| PRINTS | 65 | 76 | 12 | 1.1E-9 | ||
| CDD | 65 | 122 | 58 | 1.00275E-31 | ||
| PRINTS | 87 | 103 | 17 | 1.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0368600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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