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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0369100 |
| Transcript ID | LotjaGi3g1v0369100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT4G32890.1 GATA transcription factor 9; Swiss-Prot: sp|O82632|GATA9_ARATH GATA transcription factor 9; TrEMBL-Plants: tr|V7ASR6|V7ASR6_PHAVU GATA transcription factor; Found in the gene: LotjaGi3g1v0369100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75570076..75572204) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACTCCCATCTCTCTCAGACCAAACTCTCACACTCGCTTTCAAAACGCTGCGTTCCATTCTCTCCAAACAATAACAC CACCACCCACTCCCTGTCCTCTCTGTACGTAAATGGAGGCGCCGGAATACTTCGTCGGTGGCTATTACGGCGCCGGAGGA CAGGACCAATTCTCGCCGGCGGAGAAACGCCACACCGACCAGAAACCCGGCGAGCCTTTTGCCATCGACGACCTCTTCGA TTTCTCCAATGCCGATGCTATTATGTCCGATGGTTTCTTCGACAATGTCGCCGGAAACTCCACCGACTCCTCCACCGTCA CCGCCGTTGACAGCTGCAACTCCTCAATTTCCGGCGGAGACAACAACCGCTTCGCCGCCGCCATTGTCCCCCGTGGCTTC GCCAGTGATCTCCACCTCTCCGGCGAGCTCTGTGTTCCGGTAATAATTCACAACATTTCACAGAATTTGAATTTAAATTG AAATTCAAACAAAACCCCCCAAATTGAAATTAAATTAACTTGAAATTTTGAACAATTCAATTTGAATTTTGAATTAATTT GAAAATTGAAAACTGAATTTTCTGGGTTGTGTGATTCTGTTAGCAGTATGATGAAATGGCTGAACTGGAATGGCTCTCGA ATTTCGTGGAAGACTCGTTCTCCGCGGAGGAGGAGCTGAGAACGCTGAAGCTTCTCTCTGGCGCCGCCGCTACCACCACC GTAGGCACCAAGCCGCAGACTCCGGAATCCTCCTCCTCCACCGACACTCTCCCGCCGTTCGCCGCGGATGACAGCACCCG CAACGCGCCGTTCCTCATCTCGGAAACCCCGCTCCCGGGGAAGGCGCGGAGCAAGCGGTCGCGACCGGCGCCGGGGGACT GGTCCACGCGCCTCCTCCATTTGGTCTCTCCCTCCGACGCGCCTTCGCAGCAACAGAAGGTTGCGCCGGTGAAGAAGCGG GAGGGGCTGAACACGGAGTGCACCGGGAGGAAATGCCTCCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGGACGGGGCC GATGGGGCCGAAGACCCTCTGCAATGCGTGTGGTGTGAGGTTCAAGTCCGGGAGGTTGGTGGCGGAGTATCGTCCGGCGG CGAGCCCGACGTTTGTGTCGGCGCGGCACTCGAATTCTCACCGGAAGGTTTTGGAGCTGAGGAGGCAGAAGGACATGCAG CGGCAGCAGCAGCAGCAACTGATGAGTCAGAGTTCGATTTTCGGCGGATCCAACGGTGGAGATGAGTTCATGATCCGTCA TCATCATCAGCATCATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTGTGGGCCAGAGTTTAGGCATGTTA TCTAGTGAGTGCTAGCCTAGTTTAATTTAGGGTGGAGGTTTAAGTTTTAATTAACTATCTTCAGCTTTGGCACTCTTTTG TTTTTATCTGAAAATTTTGTCTTATAAATTTGAATTTTGTAGCTTTTCTAATTTTACTCTTTTTCCTTCGTGGCAAAAAG TCAGAAAAGTGAAAAGTAAAAAAGAAAAAGAACTGTTGAATTATGGGGAGGGGTAAACTAGGGAAGAACAACTGCATTTG GTTGTAGAATGAGAATCTACTCTTGATTGCCTCCTTGCCCAATTTGGCAAATTTGGAATCAAAATCTTGTTTTATTGGAA ATAAGCATGAATAAAAACTCAAGAAGAAAATACTCCTATGAGTAATACTAGTATTTAATTGACCTTGTCTGTTCTGTAAA CTGAAAATTTACACTATAATATCCTCTACAATATTTGACAATAGTACTTTTGGTGCGGTGTGTTTGATTTGTGATACTGA TATGATGATTGTGTTGATTAATGATCTACAATAAGTTGTTTATAATCTCAGAAGCAATGCAATGCCCTGACTCGTGTTGA TGATTGGAGTATAACTCATCCAAATTTTTAAAAAGACTAGATTAGTATGGACCGTGGAAAAGTGTATATGGAGCCCAATT GGTGGTATACCTGGGAATTTGCATGAGTACTATTCACAAATAATAAATGAGCAGCAAAAGATGGTTGGTTGGCAATTTGG TCAATTGGTAATGATGAAGCAATGTGTTGATCTTTTGCCTTATCAAAAA
CDS sequence (LotjaGi3g1v0369100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCGCCGGAATACTTCGTCGGTGGCTATTACGGCGCCGGAGGACAGGACCAATTCTCGCCGGCGGAGAAACGCCA CACCGACCAGAAACCCGGCGAGCCTTTTGCCATCGACGACCTCTTCGATTTCTCCAATGCCGATGCTATTATGTCCGATG GTTTCTTCGACAATGTCGCCGGAAACTCCACCGACTCCTCCACCGTCACCGCCGTTGACAGCTGCAACTCCTCAATTTCC GGCGGAGACAACAACCGCTTCGCCGCCGCCATTGTCCCCCGTGGCTTCGCCAGTGATCTCCACCTCTCCGGCGAGCTCTG TGTTCCGTATGATGAAATGGCTGAACTGGAATGGCTCTCGAATTTCGTGGAAGACTCGTTCTCCGCGGAGGAGGAGCTGA GAACGCTGAAGCTTCTCTCTGGCGCCGCCGCTACCACCACCGTAGGCACCAAGCCGCAGACTCCGGAATCCTCCTCCTCC ACCGACACTCTCCCGCCGTTCGCCGCGGATGACAGCACCCGCAACGCGCCGTTCCTCATCTCGGAAACCCCGCTCCCGGG GAAGGCGCGGAGCAAGCGGTCGCGACCGGCGCCGGGGGACTGGTCCACGCGCCTCCTCCATTTGGTCTCTCCCTCCGACG CGCCTTCGCAGCAACAGAAGGTTGCGCCGGTGAAGAAGCGGGAGGGGCTGAACACGGAGTGCACCGGGAGGAAATGCCTC CACTGCGGCGCGGAGAAGACGCCGCAGTGGCGGACGGGGCCGATGGGGCCGAAGACCCTCTGCAATGCGTGTGGTGTGAG GTTCAAGTCCGGGAGGTTGGTGGCGGAGTATCGTCCGGCGGCGAGCCCGACGTTTGTGTCGGCGCGGCACTCGAATTCTC ACCGGAAGGTTTTGGAGCTGAGGAGGCAGAAGGACATGCAGCGGCAGCAGCAGCAGCAACTGATGAGTCAGAGTTCGATT TTCGGCGGATCCAACGGTGGAGATGAGTTCATGATCCGTCATCATCATCAGCATCATCACCATCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCATTGTGGGCCAGAGTTTAGGCATGTTATCTAG
Protein sequence (LotjaGi3g1v0369100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAPEYFVGGYYGAGGQDQFSPAEKRHTDQKPGEPFAIDDLFDFSNADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSIS GGDNNRFAAAIVPRGFASDLHLSGELCVPYDEMAELEWLSNFVEDSFSAEEELRTLKLLSGAAATTTVGTKPQTPESSSS TDTLPPFAADDSTRNAPFLISETPLPGKARSKRSRPAPGDWSTRLLHLVSPSDAPSQQQKVAPVKKREGLNTECTGRKCL HCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVAEYRPAASPTFVSARHSNSHRKVLELRRQKDMQRQQQQQLMSQSSI FGGSNGGDEFMIRHHHQHHHHQQQQQQQQQQHCGPEFRHVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 337 | 337 | 3.7E-111 | – | |
| PANTHER | 1 | 337 | 337 | 3.7E-111 | – | |
| MobiDBLite | 8 | 31 | 24 | - | – | |
| MobiDBLite | 145 | 202 | 58 | - | – | |
| MobiDBLite | 145 | 168 | 24 | - | – | |
| ProSiteProfiles | 233 | 269 | 37 | 12.255 | ||
| SMART | 233 | 283 | 51 | 1.8E-15 | ||
| Gene3D | 233 | 284 | 52 | 1.8E-13 | ||
| SUPERFAMILY | 235 | 296 | 62 | 2.52E-13 | – | |
| CDD | 238 | 285 | 48 | 6.06771E-14 | ||
| Pfam | 239 | 272 | 34 | 4.9E-15 | ||
| ProSitePatterns | 239 | 264 | 26 | - | ||
| Coils | 297 | 317 | 21 | - | – | |
| MobiDBLite | 335 | 361 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0369100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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