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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0372100 |
| Transcript ID | LotjaGi3g1v0372100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | IQ domain-containing protein; TAIR: AT3G16490.1 IQ-domain 26; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|I1KGH8|I1KGH8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0372100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76209921..76213699) extracted from Lotus japonicus Gifu genome v1.2.
CGGCATCAACCAAAGTCACGGAAAACTCCCAATTGATTCTTAATGGACATAAACAAAAAACACACATTTCAATTCAAAAT TTGAAACACAACACACCCCAATGATGAATTTTCCAAATCCGATCAAGATAAGGTTATCAATTGCAAGAACAAATATCACA TCACATGCCATTAATTCTGCTCAGCCAACAAAAACGAATTTTCGAGCATCCCAAAGAGTTTGCACTTGAAAATTGGTAAT AGTACTACTACTAGTAGTGAAGCTAAGAATTGAATTCAATGCTTTGGTAGTGCAAATTCCCATTAACTTCTGAACTCAAC CGATACCATTTGGAAATTTGGAAAGGCACTATTCACGAAGGCATCGTCTCAGGTTTGCTCGCAGAAGAAACTGCAGCACT TTTGCAGCAGAGAGAAGGGTAGTAAGGTAAGGTAAGGTAAGCAAATCAGCAATGGAATCATGAATTGGTCAGGGAAAGTA GGAGGAACCTTTATACACTTTATACTTAGCATATTTTTTTTCTGTTAATGTTTATTATGATTTATGAGATTCTGAAACAG AAAGATCTCTTTTTACCAAAACCATGGCAGACCCAGTTTTGGCTTATTAGCTGGGACAAAAAAGATGATATAAAAGAATC CATTTTGGTTGGTAAGAGCCTTTAATTCAATCGTACGATGGATCAAGTTTTAGCCTTTAAAAAGTGGTGTTATTCGCTTG CAGAGCTTAACTCTCAGTCCCAATGGGGTGTTTGAAACTCAATGGGGTGTTTGAAATGCTTTACTCAATGTAGGGTTTGA ACCTGAAAGTCTGAAACCCAAACAAGTTCACTCACGGAGTTTTTTGTCAGTGGGTATCTTTCATATGCAGTAGTACACGT TGCTCCACAAAGTTAGAAAGAGAGAGAGAGAGAAATAGAGACAGAGAATTCGGCGCTCTTTCTCTTTTTTTGAATTCAAG ATCAGATAATAAGAAGCTGGTTTGGTTTTGGTCTGGATCTTGGGGGTGATTATTATTAGCACTTTTTTTCATATGATTTC ACCTTTTTGCTTTGTCTCTAATTCTTGTCTCTTAACTCTTGGTGATGTTTTTTTTGCATGTTTTCTAATGGGGTTTTGAG TCATTGAGTGAGTGTGTGTGTTTTTTTTTACTTTTACCTCTCTCTCTCTCTCTTTGCTAGCTTTCTGTGACATCTTTTTG TCTTGTAATGCAGTTCATCACGAGGTGTTGTCAGAGGTTAATTTTCAAAAAAAGCTCCATCTTTATCCAATTTTTCCCAC TTATTTTAATTTTAAGGTTTTGATTCTCTTTTTCTCTCACAAGTCACAACCTGGTTCTCATTATTATTAATCTTTTCCTC CACATCCTGCTCTCATCACTTGCACCTGTTTTGTCCCTCCATTCAAATTTTTTTACCCAATTCATTCCCTCGTTTTAGGC TCCACTTGGTTTCACTTGGTTGCTACACTTGTTCACTCACTCACTCACATTTTAAGGCAAACCCCACTAATACTCTCACA TTGTTTTTTGAGATTAATAACTTTGGTACTGTTTCTCACTCCAGATCGTGAGAGAGAATGGGAAAAGCTAGTAGATGGTT GAAGGGGTTGTTGGGGATGAAGAAGGAGAAAGACCACAGTGGCAATTTGGCTCCTGACAAGAAAGAAAAGAGAAGGTGGA GTTTTGCAAAGTCAGGGAAAGATGTGCCTGCATCACCAAACATTAGTCCCACATCGGCCACTGATAATCCCTGGCTCAGA TCCTATATTGCTGAATCAGAGAGCCAGCAAAACAAGCATGCCATTGCGGTGGCTGCTGCCACCGCCGCCGCCGCAGATGC TGCTGTCGCCGCCGCTCAGGCGGCTGTGGCAGTGGTGAGGCTGACTAGTCAGGGCAGAGACTCCTTGTTCAGTGGAAGCA GAGAGAAGTGGGGTGCTGTCAAGATCCAAACTTTCTTCAGAGGCTATTTGGTATGTCTCTTTAATGTTTCAAATCTCATG TGGGTATGTCTGTTTTTTTTCTTCCTCAGTTTTTGCAAATGTTGAATTGAGTGTCTTGGAAAAATGTGTTTGGTTTTGGT TGGTATATGTTAGTTTCTTTGCTTGATTCTTACTCATTTGTCTGGTCTCAAAAGGTGAGAAAGTTATTTTTAGATTCTTA ATGAAACAGTGTCCCCCCTCCATTTCTGTGAAACAACTAGCATCTGCACTTTCCATTTTTGACCTTCTTGTTGACTTGGC TTGTTAATATTCAAATCCTGTTAAAACTATTTGATCCTATTTGAAATCATCTTAAACATTTGACAGTTTGAAAGGTAATG CTTAATCTCATTACCTACCTTATTAAGTTTCATGCTTTCTAGTTAGTTTTGATTAAGGCCTTAAGGTCTTGATCTATGTT GTGATTTTTAGTAAGTTACTTCAATTCAAACTTATAACATGTTTGGATCAGCTTATTTTTCTTCAAAATCAATTCTGTCA CACAAGCTACTTTACCAGAGTTCGATTTGATTTTGTCATTAGAAAGTTGTAGTAAGGATTTCTAATCATGCTATTGATGT TGTTTACTTTCAGGCGCGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGCTATCTAG TTAGGAAGAGGGCTGCTGCAACTCTTCATAGTATGCAAGCTCTAATAAGAGCTCAAGCTGCTGTTAGAACACAGCGAGCT CGTCGTTCCATGAGCAAAGAAAATAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGTAATAATAAAACCTGGTTT TCTTGTTCTGCTATATTGTATTGTATCAACAAACAATGTCTTGTTTGCTCATTTGTCCTTTCTTTTACTGCTAGGAGCGA TTTGAGGAAACAAGGAGTGAATTCCACAGCAAAAGGCTACCTACATCTTATGAAACATTTGATGAGAGCCCCAAAATTGT TGAAATTGACACTTACAAGACTAGATCAAGATCGAGGCGCTTCACCACTACGATGTCTGAGTGTGGAGAGGACCTGCCCT GTCACGGGATCTCGTCGCCTCTTCCTTGTCCAGTCCCCGGCCGATCCCCGGCTCCTGATTGCCAGCATGTTCAGGATTTC GATTGGTACTTCAATGTTGATGAGTGCAAATTCTCCACAGCACACAACACCCCTCGATTCGCAAATTTCGTGCGTGCTAA AACTCCAGCTACGCCGGCCAAGAGTGTTTGTGGAGACACTTTCTTCAGGCCTTACTCCCATTTTCCTAACTACATGTCCA ATACTCAGTCATTTAAGGCAAAGCTAAGGTCTCACAGTGCTCCAAGGCAAAGACCTGAAGCCAAGAAGAGGCTTTCGCTC AATGACATGATGGCGGCGAGAAATAGCATAAGTGGTGTTAGAATGCAAAGGCCATCTCATTTGCAAACTCAGGATGAAAT AGAATCCTGGAATTTATGACACAGCCATGCCCTGTCACAGCTGGAGAATCAAAAGGAGAAAAAACTTGAGTCTAGATGAT GTTAGTGCTTTGGAATGTGTTTTTCCACTTGTGCTGGAGTGTGTACATTCTTTGAAAGAGTTTTTTTTTTTCTTTTTCAA TCATGTCTTTTCTCTTGTACCAAGTGATTTACATCTAGTAAAGAATTTGGCTTGTTTTTTCTTTAAGAACAGAACTTGGT ACACTAATTGCTGGTTTTGGATTCTGGTTTGAAACTGTTTCATAGCATTTACTGCTGTGCATTGCTATAGAAATGCATAA AGATTAAGGAGTAAGGACC
CDS sequence (LotjaGi3g1v0372100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAAGCTAGTAGATGGTTGAAGGGGTTGTTGGGGATGAAGAAGGAGAAAGACCACAGTGGCAATTTGGCTCCTGA CAAGAAAGAAAAGAGAAGGTGGAGTTTTGCAAAGTCAGGGAAAGATGTGCCTGCATCACCAAACATTAGTCCCACATCGG CCACTGATAATCCCTGGCTCAGATCCTATATTGCTGAATCAGAGAGCCAGCAAAACAAGCATGCCATTGCGGTGGCTGCT GCCACCGCCGCCGCCGCAGATGCTGCTGTCGCCGCCGCTCAGGCGGCTGTGGCAGTGGTGAGGCTGACTAGTCAGGGCAG AGACTCCTTGTTCAGTGGAAGCAGAGAGAAGTGGGGTGCTGTCAAGATCCAAACTTTCTTCAGAGGCTATTTGGCGCGGA AGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGCTATCTAGTTAGGAAGAGGGCTGCTGCA ACTCTTCATAGTATGCAAGCTCTAATAAGAGCTCAAGCTGCTGTTAGAACACAGCGAGCTCGTCGTTCCATGAGCAAAGA AAATAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAGCGATTTGAGGAAACAAGGAGTGAATTCCACAGCAAAA GGCTACCTACATCTTATGAAACATTTGATGAGAGCCCCAAAATTGTTGAAATTGACACTTACAAGACTAGATCAAGATCG AGGCGCTTCACCACTACGATGTCTGAGTGTGGAGAGGACCTGCCCTGTCACGGGATCTCGTCGCCTCTTCCTTGTCCAGT CCCCGGCCGATCCCCGGCTCCTGATTGCCAGCATGTTCAGGATTTCGATTGGTACTTCAATGTTGATGAGTGCAAATTCT CCACAGCACACAACACCCCTCGATTCGCAAATTTCGTGCGTGCTAAAACTCCAGCTACGCCGGCCAAGAGTGTTTGTGGA GACACTTTCTTCAGGCCTTACTCCCATTTTCCTAACTACATGTCCAATACTCAGTCATTTAAGGCAAAGCTAAGGTCTCA CAGTGCTCCAAGGCAAAGACCTGAAGCCAAGAAGAGGCTTTCGCTCAATGACATGATGGCGGCGAGAAATAGCATAAGTG GTGTTAGAATGCAAAGGCCATCTCATTTGCAAACTCAGGATGAAATAGAATCCTGGAATTTATGA
Protein sequence (LotjaGi3g1v0372100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKASRWLKGLLGMKKEKDHSGNLAPDKKEKRRWSFAKSGKDVPASPNISPTSATDNPWLRSYIAESESQQNKHAIAVAA ATAAAADAAVAAAQAAVAVVRLTSQGRDSLFSGSREKWGAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAA TLHSMQALIRAQAAVRTQRARRSMSKENRFLPEVLARKSVERFEETRSEFHSKRLPTSYETFDESPKIVEIDTYKTRSRS RRFTTTMSECGEDLPCHGISSPLPCPVPGRSPAPDCQHVQDFDWYFNVDECKFSTAHNTPRFANFVRAKTPATPAKSVCG DTFFRPYSHFPNYMSNTQSFKAKLRSHSAPRQRPEAKKRLSLNDMMAARNSISGVRMQRPSHLQTQDEIESWNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 376 | 376 | 4.9E-168 | – | |
| MobiDBLite | 1 | 54 | 54 | - | – | |
| PANTHER | 1 | 376 | 376 | 4.9E-168 | – | |
| MobiDBLite | 10 | 38 | 29 | - | – | |
| SMART | 115 | 137 | 23 | 0.007 | ||
| ProSiteProfiles | 116 | 144 | 29 | 10.054 | ||
| Pfam | 119 | 137 | 19 | 2.4E-5 | ||
| SMART | 138 | 159 | 22 | 13.0 | ||
| Gene3D | 139 | 184 | 46 | 2.8E-5 | – | |
| ProSiteProfiles | 140 | 167 | 28 | 9.157 | ||
| Pfam | 143 | 157 | 15 | 8.9E-4 | ||
| ProSiteProfiles | 164 | 193 | 30 | 6.559 | ||
| Pfam | 299 | 373 | 75 | 7.0E-14 | ||
| MobiDBLite | 375 | 394 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0372100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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