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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0374100 |
| Transcript ID | LotjaGi3g1v0374100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase complex subunit SAP18; TAIR: AT2G45640.1 SIN3 associated polypeptide P18; Swiss-Prot: sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18; TrEMBL-Plants: tr|V7ANN3|V7ANN3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0374100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76621597..76625721) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAAGGGTTTTGGAAGTTGTGGGTTTAGCAGGAGTAATAGAGAAGGAAGATGGGAAACGCAAAAAGCCCAGACAGGC CCAAGAAGTAGTGAGGTGAGGTTTGTGAAAGCAGGAAGCGAGAGAGAAACAAATTGATAATCATTCACAGAAACCAGCGG AAGGAAGAGGAAGAAGAAAGACATGAGCGAGGCCGCAGCAAAACGACAAGGTGGGAGGCCGTTGCCTCCGCCTCCAAGAG GCCCTCCTCCCCATGCTTCACGACCTCGCCCCGACCCCGTCGATCGCGAAAAGGTACCTTCCCCTTTCTATTCCCTATTC TTCTTCTTCTTCTTCTTCTGGAGTCAACCATGGCAGTAACATTCTTCTTGTTTGATTCCAGACATGCCCTTTGTTGCTCC GAGTCTTCACTAAGGTAACCTCCTTCTCGCTTTCTTTTCTATGTGCGAGCGAATGGAATGGAATGACCTAATATATATAT ATATATTGATGTGTTAGATTGGAGGTCATCATACAATGGAAGATTTCGCTGTCAGAGGGAAAGAGCCCAAGGACGAGGTT CAGATTTATACCTGGAAGGACGCTACTCTCAGAGAGTTAACTGATCTCGTTAGTATCCATCCTTTCCTTCTCATAACTAA ATTTAAACATTTGTTTTATTTTCTCTTTTCAATAATTTATTTATATAGGAAATTACATTCTGATGAAGATGGGGAGATTT TTTTTTTGTTGAAGGAGAGGTAGTTAACTACTTAACTCGGTCACAAGTTTGAAGAATATATATATTAGCATCTCTTAGGT GTAGCTAGACAAATCCTAGTTCAGGAAAATTTTCAAATGGTTTCATGCAGACTTGCATCCAGCGAACCTCATTAACAAGA TCCCTACTCGAGTCCTGATTAACAAATCACTATATGAATTCATCTTAACCGCCTAATGCCTTCTGTTAAAATTTGATCTG AGGGCTAGGAAATGTGCATTCCTAGGTTATAGACAAGGAATCTAAGGTTATGTAGTCATTGACATGCATTCTCAGCATAT TTTGTGTCCCGAGATGTGGTTTACTTACGTGAGCAGGTTTTCCCTTACAACGCTTTAAACACTTCTTTACCTACGCGTTG CCACTTCTAAAAACCATTCTAGCAGAACTTCAAAACCACACCCTTAGCTGTAGCACTGTCTCTGCACTACCTTACCTAAG CACCCACTCCACAGCACATTCCATGTCTAGTTATCTTTCATGTGGACACATCTCTTCTTCACATACGGCATATGCTTGGG GTATGCTCAGTTCTCTTCTGGCATACTTCTTCACTTAAATTTAAGAAATCTCACTCTCGCCACTCCTTGTATGTGTTGAT GATGTCATATTGGTTGGCTTTAGTAATGTTGATTGGGGTGGCTTCCCTAACACTCGGCAGTCTGTCTTCGAGTATTTCTT ATTGGGAATTCTCTCATTTTCGGGAAATCTAAGAAGAAGAAAAACAACCGTTGCACGATCCTGTTTTGAAGCGAAGTACA AGACCCTAGCTTCAGCTGCTTGTAAATTGCAATCTCAAGCAATGCTTTATTGTAACTGGATTGCCTGTCACATATCATCC AATTTGGGCCAAGCATCTTGTGACTGACACATTGTTCGCGAGAAGGCACATAGTGGTCTCATGCGGTTTCTTCCTCTCTC CACATATAACCAAATTGCCATGGGTTCACCATGGCCTTGCTCCCTCTTACATTTGCTGCAACATAGGTATAGTGGACATT TTCACATAAGGGAGATGGAGAGGCAGTTAACTCAGTTAGCTGGTAGGAGTTAGTTACTTCGTTATTTTTCCTACAGTTTG TTCCTCTACAGTTGGCCATTTTCACTATGGTTACTTTCATTTATGTAAGCTTGTATGCAGCGCTCAGTTGATCCATGGAA CAGTTTAAATTCTGCTATCAAGATTTTTTTCCTCCCATCTCTGTTCACTCGGAATCAGTGAATACAAGAATTGAAAACAT AAGAAACTGGGCCTTAATATTCTCCATTATCTGTAATTTCTTGAATGAAATGATGTTTTTTTGTTTTGTTTGGTTGATAT GCTTTTGTGGTTGTCTGTATATCTTGTACAGGTCAAAGAAGTGGCTCCAGCTGCAAGAAGGAGAAATGCAAAGCTTTCAT TTGCCTTTGTGTTTCCTGATAAAAATGGCCGTTTCAAAGTTCAAGAGGTAACTCTTCTCAACTTTCAATAGGCTTGTTAA TACAAGAAAGTCACCTAATATATAAGTTCATTTTCATGTTTGATGCATATAAAAAACAAAACAGAACATGCATAAGAAAG GTCACCCATTTATGTTCTCCTTAAAAGATTGAAATTAAAGAGATAAGAAGAAAAGGTTTTGTTCCATTTTGTTCGCTTGT CAATCGCTACCTATGTGTCTTTTGCTTATTACTTTAACCTTACTGTGATGTTTTTCTTTTTACACATATAGTATGGTTTT TTTTTTTCATGCGATATATTTGGGTTTTAAGAGTGAGTTCTTGACAATCTAGATTTTGTGTGCGCTAAGAGTGGTAAATG AGTCGAATTGGTTTAATAATGAATGAAACCTGTGACAAAAACCTGTCTTTGATTTTGTTATCTTAAGACCAACATGTTAA AAGTTATTCCCAATTCACTTAAGTTTGTGAACTTTACTTCATAGTTGATTACCATTCTGGTCCAGCCAGTTCAGGTGATG CATACCTGTTGCACGTTGTTGATAATGATCACACTAAAGTAAGAGATTCACTTCAGAGTAAAAAGTGAGAATTAGGATCA TATATCGGAAAGTCCACTGTTAATCTTATAATCATACACAAATAATTATATAAATAAGAAGTTGTTTACGTCTCAAATGT TAGTTTTTCAACTAGTGACTTTTATTGTTTTTTTCAAGTAGATAACCCCGTATACCAACGGGCTCCTTTTACTGTTTTCT TTTTCAAATCATCTTAAAAAGCTAAAGCCCTCTATTCTCTTAATGGTGCCTTAAACTTTTGCCCTAAGTTTCCATTTTGG AATTATATACTAATTTGAAGCCTGTCCAATGTACCAAGAGAAGTCTTTAATGCAAAGAAACCTCAATATTTTCGCAAACC ATAAAGTACTGCCCTTCAAGATCACCTCTTATAAGTGACTGTTGTAATCATGAGTTTTTACTTTCATTTTGAATCAATCT CATACTTTGTCTTCATACTTGATTGCTTGATGAAGGTGGGCAAGACATTATCGTTTGGTACTGGTAGATTAGATGATGGC AAGGCTTTAGCTGACCTTGGTTTTGAGGTAAAGAATTCTTCTTCTTCTTCTTCTTGCATTTTTACTTGATTATTTCAAAT TCTGTTTCTGACTTTGTTCGTGAATATGCAGATTGGTGATTACTTGGATGTGTCTATTATTGTGTAGGTTATTATGATTG CATCTGTAACTATGTGTTTTGGGCTGCGTATGTGTGAAGGCCCTTGTATTTTGGAGTTAAAAGACTTATGTATTGAATGT TTAGTTTTTAATGTCACATGAACTAAAAAATAGGTCTAGTTTCTTTGATTGCAAAAAATGAGAGATTTGCTATTTGATTA GCCCTCTCTGCTGTGGCAGAAAAGAAACAATTACAGCCTTAATGCCTATTATCATGGACTCTTCACTGTATTTTTGTTTA CATAAGATAAAAAGAAAAGGTTAATGTTAAATGGAGAATTTAAAGATGCGTAGAATGCAAGTTAATAAGCAAAGAGTAAT TGAATTTTGTGATTCCAACTCAAACCCGTGATTTTTGTTACACTTCCTCCTCACGGCAGTGTGAAAGAATCTTGTATTTT CATCACAAACCAAACCCATTCTTCTCAAGATTTATGAAGCCAAAGGAGCTTCTCTTGTTTCATTACCACACAGGGCTCTT TCTGTAGACTCCTCTCAAAACAAACCAAGTTTTGAGACCTACGCATAGCTTTCTCTAGAACACAAAAATTCTTGAATCCA CTTCTCTAGAATATATTTCCAAAGATATCAGAATTAAACTCAAGAGAATCCTTTCTAACATTAGAGAGAGCATCAACGAC ATTATGGCTTACTTTCCTCCACGCATTATCAACCACTGTACCATA
CDS sequence (LotjaGi3g1v0374100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGAGGCCGCAGCAAAACGACAAGGTGGGAGGCCGTTGCCTCCGCCTCCAAGAGGCCCTCCTCCCCATGCTTCACG ACCTCGCCCCGACCCCGTCGATCGCGAAAAGACATGCCCTTTGTTGCTCCGAGTCTTCACTAAGATTGGAGGTCATCATA CAATGGAAGATTTCGCTGTCAGAGGGAAAGAGCCCAAGGACGAGGTTCAGATTTATACCTGGAAGGACGCTACTCTCAGA GAGTTAACTGATCTCGTCAAAGAAGTGGCTCCAGCTGCAAGAAGGAGAAATGCAAAGCTTTCATTTGCCTTTGTGTTTCC TGATAAAAATGGCCGTTTCAAAGTTCAAGAGGTGGGCAAGACATTATCGTTTGGTACTGGTAGATTAGATGATGGCAAGG CTTTAGCTGACCTTGGTTTTGAGATTGGTGATTACTTGGATGTGTCTATTATTGTGTAG
Protein sequence (LotjaGi3g1v0374100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEAAAKRQGGRPLPPPPRGPPPHASRPRPDPVDREKTCPLLLRVFTKIGGHHTMEDFAVRGKEPKDEVQIYTWKDATLR ELTDLVKEVAPAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSFGTGRLDDGKALADLGFEIGDYLDVSIIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 5 | 151 | 147 | 3.8E-84 | – | |
| PANTHER | 5 | 151 | 147 | 3.8E-84 | ||
| MobiDBLite | 11 | 27 | 17 | - | – | |
| Gene3D | 23 | 152 | 130 | 4.6E-46 | ||
| Pfam | 32 | 150 | 119 | 1.2E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0374100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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