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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0379900 |
| Transcript ID | LotjaGi3g1v0379900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase family protein; TAIR: AT3G61220.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9M2E2|SDR1_ARATH (+)-neomenthol dehydrogenase; TrEMBL-Plants: tr|I3SA17|I3SA17_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0379900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77257126..77259959) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTTTAAATATTTTTTATGAAAACTGTTTTTAGATATAGAAAACTAAAATAGAAATCAAACAACCCCTTAGAGTTTC TTTTTATGCACAAGCCCTTAAATTCTAAAGATACCACACATCAACCTCTTAAGTTAAATAAAAACATTATTTATAAAGGA AAAATCTAAAACCACCTAACATTTTATAGCTTTCCGTCCACTAATTTGCAGGCCTTTCCTTCTTTGATGAGCAATGGCAG AAGCAACAGCAAGGTACTATTTTCCTCAGCCTCTCATTCTTCAACATACCTTACAGAACTAACTATAATGATAATGAGTC ATGTGTTAACTTGTTACACTCTAGGTATGCAGTTGTGACAGGAGCAAACAAGGGAATTGGATTTGCAATATGCAAGCAAT TGTCTTCTAATGGTATCACTGTGGTGCTGACAGCAAGAGATGAGAAAAGGGGCCTTGAAGCTGTTGAGAAACTCAAAGGG CTTGGTCATGTGGTTTTTCATCAACTTGATGTCACTGATCCTGCAAGTATAGGATCATTTGCAAATTTCATCCAGACCCA CTTTGGAAAACTTGATATCTTGGTAGCAAAATTCTCTCTTGCCTTTTGCTTCTTTTGTGTTTAAGATCTTATCATTAACC ATAACCTTTTGTTGCTTCTTTTCAATGATTCATACTATATATGCTGATCAATCTGGTTACATTTTAAGTATTCATGGCAT GTTTGGACCAGTTTCTCTTTTTCCAGAATCAATTCTAAAATCCAGAAGCTACTCATATAAGCTTCTCCTTATAATTGATT TTGGCTTTAGAATCAATTGTAGAAGAATTCCAAAACATGCATTGAATTTATTAAAAAGTGATAACTGCTTCTCACATGTT ATACAATCAAACATAGACTAGTTTTGATTTCTGAATATGATGATGCATCCTTGATTCTGCTAGTAGCCTTCATTTTTCAT AAAACAGGACATATATCTGCTATTTGTTTAAGGGATTTCTTTCATACTTTTTTCCACTTGCGAATATAGCTTCTAGTTCA ACTTGAATTTGAATGACCATAAAATATTTGAAACTGGGAATTTTTTCTAGGTTAACAACGCTGGGGCCTCAGGAGCACAT GTGGATGGTGAGGCTTTGGCTGCTGCAAATATTGTGGTATGATTTTTTTACCTCAAAAGCTGAGGCCATGATACAACATA ATTATGGTGAAAGTGATTATAATTATAGTATTTCTCATCTATAAAGAAAGTGATTGTCAGATACTACATAACTTTAATCA AAAATTAACAATTTCAGGTCATGCCTTGCACCGGTATGTTCCCTCATCAACTCATTCAAAAAGAAATGAAAAGTTTCTTA TTTTTTATTGCAGGAAAACGGTGGCCAAATTGATTGGAGAAAAATAGTTACTGAAAACTATGAATTAACTGAAGCATGTC TTAAAACAAACTACTATGGAGTCAAGGAATTGACCAAAGCACTAATTCCCCTTCTCCAGATTTCAGGCTCACCCAAAATT GTCAATGTTTCTTCATCCATGGGAAGGCTTGAGGTATGCGATACTAATAACTTTGAATCAGATCCTCTAACATCACTTGA CAATGTCAAACAAAATTTCAATATGATAATGTCACGTGAAATTTCTGATGAGCGAATCATGATTCTATCATTTTGTTAGG GTAGCTAAGTTGGAGACACAAATTCTGGAAATTTTAAAGCTTTTAATTTGCATAAAGTTCCCTTTATGCACGAGGTCTAG GGAGGGCCCGGACCCACTTTTTAGATCTAATGTAGCTAGTCTTACCTTGCATTTTTGCAAGAGGCTGATTCCACGACTCG AAATTGTGACCTCAAAGTCACATGGCAAGAACCTGACTATTGCGCCGATGCATAACTGGATATCATGTCTAAAATTAAGT AGTTCATTAATTGATTCAATATATATGTTATGTCACTTGGTTTATTAGTCCAATTGAAGGTGATGCTTATTCTCATTAGC TGTTTTGCAGAATATACCAGATGGAAGGCCTAAACAAGTGATAGTTGATGTTGAAAACCTCACAGAAGAAAAGATTGATG AGTTTTTGAATGAATATCTAAAGGATTTTAAAGAGGGTTCCCTAGAAGCCAAAGGGTGGCCTCATATTATGTCTGCATAT ACAATCTCAAAAGTTGCTCTGAATGCCTACACAAGGATTCTAGCCAAGAAATACCCTTCATTCTGCATCAATGCTGTTTG CCCTGGTTATGTCAAAACGGATATCAACTACAATACAGGTCTCCTAACACCTGATGAAGGTGCTGAAGCTGCTGTCAGGT TGGCACTGCTACCTGATGGTAGTAGTCCTTCTGGCCTTTTCTTCTATCGAAGTGAAGAGAAACCATTTTAATTTGATCAA GGATTAATTGAGTCTAGGAAACATAGTCTTTGTTAAAGGAATAATGCATAGTTATGTTATACACAGGTTTAGACACTCTT GTGAGTCATGTTTTAAACCTTTTTCTTATGTAGTAACGGATTGTGTGAGCAATGTTGTTGTTTATTGTTAAACTTGTTTT GAATTCAGCTAAATAAATGAGTTACACTAGAATTGATGTGTTAAGTGTGTTTGACTTTTGCAAAATATGAAGATCAAAGG TAAGAATTCGTTGAAAATAAGTACTACATCTTTTCCACATCTTCATTGTCAAAATCTTCAAATGAGGGAAGCATTGAATT CCTTGATCAAGTAGGCATCTTACACACTTTGGCCTAACACTTGATTACCTTCATTAGCACATTCCCTTCCATAACCATGT GTGTGCCTTTCATTTGGTCCTGGACATACAGGCT
CDS sequence (LotjaGi3g1v0379900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAGCAACAGCAAGGTATGCAGTTGTGACAGGAGCAAACAAGGGAATTGGATTTGCAATATGCAAGCAATTGTC TTCTAATGGTATCACTGTGGTGCTGACAGCAAGAGATGAGAAAAGGGGCCTTGAAGCTGTTGAGAAACTCAAAGGGCTTG GTCATGTGGTTTTTCATCAACTTGATGTCACTGATCCTGCAAGTATAGGATCATTTGCAAATTTCATCCAGACCCACTTT GGAAAACTTGATATCTTGGTTAACAACGCTGGGGCCTCAGGAGCACATGTGGATGGTGAGGCTTTGGCTGCTGCAAATAT TGTGGAAAACGGTGGCCAAATTGATTGGAGAAAAATAGTTACTGAAAACTATGAATTAACTGAAGCATGTCTTAAAACAA ACTACTATGGAGTCAAGGAATTGACCAAAGCACTAATTCCCCTTCTCCAGATTTCAGGCTCACCCAAAATTGTCAATGTT TCTTCATCCATGGGAAGGCTTGAGAATATACCAGATGGAAGGCCTAAACAAGTGATAGTTGATGTTGAAAACCTCACAGA AGAAAAGATTGATGAGTTTTTGAATGAATATCTAAAGGATTTTAAAGAGGGTTCCCTAGAAGCCAAAGGGTGGCCTCATA TTATGTCTGCATATACAATCTCAAAAGTTGCTCTGAATGCCTACACAAGGATTCTAGCCAAGAAATACCCTTCATTCTGC ATCAATGCTGTTTGCCCTGGTTATGTCAAAACGGATATCAACTACAATACAGGTCTCCTAACACCTGATGAAGGTGCTGA AGCTGCTGTCAGGTTGGCACTGCTACCTGATGGTAGTAGTCCTTCTGGCCTTTTCTTCTATCGAAGTGAAGAGAAACCAT TTTAA
Protein sequence (LotjaGi3g1v0379900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEATARYAVVTGANKGIGFAICKQLSSNGITVVLTARDEKRGLEAVEKLKGLGHVVFHQLDVTDPASIGSFANFIQTHF GKLDILVNNAGASGAHVDGEALAAANIVENGGQIDWRKIVTENYELTEACLKTNYYGVKELTKALIPLLQISGSPKIVNV SSSMGRLENIPDGRPKQVIVDVENLTEEKIDEFLNEYLKDFKEGSLEAKGWPHIMSAYTISKVALNAYTRILAKKYPSFC INAVCPGYVKTDINYNTGLLTPDEGAEAAVRLALLPDGSSPSGLFFYRSEEKPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 294 | 294 | 3.8E-151 | – | |
| PANTHER | 1 | 294 | 294 | 3.8E-151 | – | |
| Gene3D | 2 | 294 | 293 | 6.8E-92 | – | |
| CDD | 7 | 294 | 288 | 6.79504E-94 | – | |
| SUPERFAMILY | 7 | 280 | 274 | 4.39E-52 | ||
| PRINTS | 8 | 25 | 18 | 1.1E-24 | ||
| Pfam | 8 | 167 | 160 | 1.1E-27 | ||
| PRINTS | 81 | 92 | 12 | 7.7E-9 | ||
| PRINTS | 81 | 92 | 12 | 1.1E-24 | ||
| PRINTS | 149 | 165 | 17 | 1.1E-24 | ||
| PRINTS | 155 | 163 | 9 | 7.7E-9 | ||
| ProSitePatterns | 205 | 233 | 29 | - | ||
| PRINTS | 218 | 237 | 20 | 1.1E-24 | ||
| PRINTS | 218 | 237 | 20 | 7.7E-9 | ||
| PRINTS | 237 | 254 | 18 | 1.1E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi3g1v0379900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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