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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0380400 |
| Transcript ID | LotjaGi3g1v0380400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIM domain-containing family protein; TAIR: AT3G61230.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q500W4|PLI2C_ARATH LIM domain-containing protein PLIM2c; TrEMBL-Plants: tr|I3RZ79|I3RZ79_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0380400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77305690..77307982) extracted from Lotus japonicus Gifu genome v1.2.
CACAAATCACAACACAAACTTTCCATTTTTGCATCACAAAATTGTTGGGTCTCCAATCACTTGTGAACCCTTTAATATCC GCGATATAAGTTACTTGTGCTTAGACATATCCAAGACTTTGTTCAATCCCCATTTGTCTGAGGGGCGCATTATTCTTTGT TGAACCTGCTCCATGTTCCTCAGACCTTAAAGGGAAAAGACATAAGACATAAACACAAAGCATTTGAAAGGTCTTGAGGA AGGGTAGAAAACATGTCTTTCACTGGAACTCTTGACAAATGTGCGGCTTGTGATAAGACTGTATATGTTGTTGACTTGTT AACTCTTGAAGGCATTCCTTACCATAAAAGCTGCTTCAAATGCAGTCACTGCAAGGGAAATCTTACGGTATACTTCTTCA AATTTGTCCCCTTCATAAGTTCTTTTCAATTATTCAAGTAGTGCCTCAATTCCCTGTTACAAATTAAAACTCAGCATTTA CAAACTCACATTGTGGTCTTTAAGTAACATGTCAAAATTTTATTAGTGAGACAGGAGTTGAGCCACATTTAAGAGAGAAT ATTTCAATGCACCCCCCCCCCCCCTCTCTCCCCATATATGACTCTCACATGTATCATAAATGAAGCAAAACTAAAGATTT TGTTTTTCTCCTTGACGGATATCCCTATCAGTTCGGGAAAATGTAGTTGTCTCAATAAATGACCTTTTCAGGGTTTAAAC TTGTGTTCTCACCCTTACGATGCCTAGTTTGCTTACCACTAGACTAACAACTTGTAGGTAAACCGGAGATATCAATTAGA TATTTGATGTTTCCAAAAGTTTAAAGATGTTTAGATTCTTGCACCTCATTGAGTCAGAGCCTAACATGGATAGATAGTTT TGAAACATCTTAGATACAGGCTTATTCATTTGATATATTTTTATAAACAATTATTTCCTAGATTTTTAAAATAACTGTCT TGACAAAAAAATTGTCATTTTAGAAGTTTTGTTTTGTTTATTTTTTTTTTTTGAAAAAAGTAGTTCAAACTAGTTCCTTA ATGAGGTCCCTATCATACTATTTAATGTTGGTCCAGATGAGCACATACTCCTCAATGGATGGAGTTCTCTACTGCAGGAC ACATTTTGAACAGCTTTTCAAGGAATCAGGCAATTTCAGCAAGAACTTTCAGAATGGTAACATGAAATCCATCTTTTGTC CAATCTCTTCATTCCTTTTTTTCCCTTCTCTCATTCAACCTCACAAGGCACAAATAGATAACCAAATGTCACTTTCTGTT AATTTGGCTAATAATCTATGTTGTTTGATTGTCTGTAAATATGGCAGCAAAGTCTTCTGAGAAGCAAGGCGAGCTGGTAT GTTCACTATCCTTCATTATGTATGTTTTTATTATCATTATCTAAATTATTATTATGTTTTGTTTCTAATATGAAATTTAT ATTGATCATTAACAGAACAGGACCCCTAGCAGACTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTTTGCAC AAAAACAGTTTATCCACTGGAAAAGGTTTGTAATCTTAACCAGCAAGTGAACTTTAATTATCATGAAAGCACAAACAAAC ATTAAAAATTTGATTGTAAATTGATTTCATATCACCTTGATTAAGAATTTGATTTAGAAAAACTAATCATACAGTTTTGG TTTTAGGTGACCCTGGAAGGGGAATGCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTGACACATTC AAACTATGCTGCCCTTGATGGGAACCTCTACTGCAGGGTTCATTTTGCACAGCTTTTCATGGAGAAAGGGAGCTACAGCC ATGTGCTGAAAGCTGCACACAGGAGGACTGGTTCTTCTACACCTCCTGAACCAGTACTTGAGGAGCCAGCAGCACCAGCT GCAGCTCCTGATGAAGAGAAAGAAGAAGAAACTTCTTGAATGAAACAACCTGGAAACATGATGATTTGCTTCCTGCCCGT CTTTCAGGGGAAGGTCTATGGTTGAAGTTCTGTGTCCAAGATTTGATATTTAACAAACTATTTTTGAGTTCAATTGTAAG CTACTTGAGAAGTTTGTTTATGTATTCAAAGTTTCAAACAAAAAGATTTGAGCCATACGATATATCCTTTTATTCAAATC TATTATATTATATTAAAACTAAGGTGTGGGCCATTAATTAGCCACCTCAGATTTTTTTTTTTTTTAATTTGACATGTACT CATAAGTTTTCCAACTTAATATGAGGTGTCACTTCTACCATTGCAACATTTTA
CDS sequence (LotjaGi3g1v0380400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTCACTGGAACTCTTGACAAATGTGCGGCTTGTGATAAGACTGTATATGTTGTTGACTTGTTAACTCTTGAAGG CATTCCTTACCATAAAAGCTGCTTCAAATGCAGTCACTGCAAGGGAAATCTTACGATGAGCACATACTCCTCAATGGATG GAGTTCTCTACTGCAGGACACATTTTGAACAGCTTTTCAAGGAATCAGGCAATTTCAGCAAGAACTTTCAGAATGCAAAG TCTTCTGAGAAGCAAGGCGAGCTGAACAGGACCCCTAGCAGACTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGC AGTTTGCACAAAAACAGTTTATCCACTGGAAAAGGTGACCCTGGAAGGGGAATGCTACCACAAGACATGCTTTAGGTGTG CTCATGCAGGGTGCCCTCTGACACATTCAAACTATGCTGCCCTTGATGGGAACCTCTACTGCAGGGTTCATTTTGCACAG CTTTTCATGGAGAAAGGGAGCTACAGCCATGTGCTGAAAGCTGCACACAGGAGGACTGGTTCTTCTACACCTCCTGAACC AGTACTTGAGGAGCCAGCAGCACCAGCTGCAGCTCCTGATGAAGAGAAAGAAGAAGAAACTTCTTGA
Protein sequence (LotjaGi3g1v0380400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFTGTLDKCAACDKTVYVVDLLTLEGIPYHKSCFKCSHCKGNLTMSTYSSMDGVLYCRTHFEQLFKESGNFSKNFQNAK SSEKQGELNRTPSRLSSMFSGTLDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSNYAALDGNLYCRVHFAQ LFMEKGSYSHVLKAAHRRTGSSTPPEPVLEEPAAPAAAPDEEKEEETS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 206 | 206 | 5.1E-126 | – | |
| PANTHER | 1 | 206 | 206 | 5.1E-126 | – | |
| SUPERFAMILY | 3 | 35 | 33 | 2.14E-8 | – | |
| Gene3D | 6 | 99 | 94 | 1.5E-18 | – | |
| ProSiteProfiles | 8 | 68 | 61 | 13.514 | ||
| SMART | 9 | 61 | 53 | 6.8E-13 | ||
| ProSitePatterns | 10 | 44 | 35 | - | ||
| Pfam | 10 | 65 | 56 | 1.2E-12 | ||
| SUPERFAMILY | 36 | 76 | 41 | 2.79E-14 | – | |
| SUPERFAMILY | 98 | 131 | 34 | 8.99E-9 | – | |
| Gene3D | 102 | 170 | 69 | 4.1E-19 | – | |
| ProSiteProfiles | 104 | 164 | 61 | 12.514 | ||
| SMART | 105 | 157 | 53 | 3.1E-12 | ||
| Pfam | 106 | 161 | 56 | 2.5E-10 | ||
| SUPERFAMILY | 132 | 171 | 40 | 2.48E-13 | – | |
| MobiDBLite | 175 | 208 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0380400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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