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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0380700 |
| Transcript ID | LotjaGi3g1v0380700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Remorin family protein; TAIR: AT3G61260.1 Remorin family protein; Swiss-Prot: sp|P93788|REMO_SOLTU Remorin; TrEMBL-Plants: tr|I1KID4|I1KID4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0380700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77330647..77334586) extracted from Lotus japonicus Gifu genome v1.2.
TTTATCTCCTGAAATCCCTCTGATTCTGATCTGAAACATGGTCCCACATCAATGGCAGATACATGGGGGACCCCCAACCG AAGAAGAAGAAGACGATGGGCACCACACCACCTCTCCTTCTCTCACAATCCACATGCCCATGCACCTTGCATTGCTGGCA CAACCCATTTCATTCTCATTCAACTACACGTGGCACCAATTTACCTATATTACCTGTCGGCACTTCACCTCTACCGCACG ATCAAACCATGCCTACCTCAAATCAACGGCTCCAAATTCCCACCACTCGCGTCCTTGTGTGTCGCTTTAAATTCAAAACC TCGTTTGTTTATCTGAACGTTGCTACAATACGTTGTTAATTTCAGATAAACACACACATAACTTTGTCTCTGTCTTTCTC TGTTTTTCCGACAAAAACCAGTGTCAGAAGCTATGGCGGAGCTCCAAACTCAGGCGGTGGAAACCGTTCCCGTTCCGGCT CCGGCTCCGGCTCCGGTTCCGGTGGTGGAACCCGAGCCGCCGCTGGCTGAGGCGCCGGTGCTTGATGAAAAGAAACCGGT GCTGGCTCCACCGCCGCCACCTGCAGCAGATGAAACCAAGGCTCTTGCTGTTGTTGATAATGAGAGTGAGTTTTCAATCC TTAGCCTTTTACAAATCATGGGTTGTCGTCAAAATTCAATTTTTTTTACAGTTGCTTGGTAGCTCTGTCTGTTTTTGGGA AATAGTGTAGGCTAGGTTTTTGTGTTGTGAGTTTTGGCAGATTGGTACAGGGGAATTGGAAAAGTTGAAAAAATGAAGGA GCAGAAATCATGTCTCTTGTATTCTGGTGCCTGGTTTAATTAGCTAGTATTGTTACTTGATTTTCTCTTTCTTCATATGT TTTCTCAAAGGCTATTGGAGCTTGATTTGTGTTGTTAGCTGAGTTTACTGTTAATTCCTTTTCAAGCTTTTTAAGTAACT GTGGATTGTTTATCAGGAAATGGATTATGGGTTGTTATCAAAATTCCAGCTTTGATTGATTGCTTTGTCTGATTTTGGTT GTAACTGTGAAGTGTGATGTTATGACTGTTATAATTTCTGTTTGGTTGATGAGAAAGCCTTGGCCAATGGAAAATGAAAG ATGAGCTAACTTTGGGGCTTGGTGTTTAACAATTCTTAAAACAATACCTACTGCCTATTTAAGTCTACTACTTGCGTTAG TGTTTTTTTCTTTTCTTTTCTGTTTTATACTCTTTACCCTGTTCCCTCTTGCTTGAGTTTCATGAAAATTTTTTATAAGG GAGTCTTATGATTTTCCATTTTCATTGTTCCTTTGAGAGAGTGTAAGGATATGGAATAGAAGAATTTTAAGTAATAGTTG TAGTTTTGTAGCTTCTTCTAATAATTTTAATTATTAGATATGCATGCTCTAAGTCATTTGTCTTCTTAATGGGGTGACCC CACTTTCTTTGGCTTGCAAAAGTTGGTTTGACTCTTTATGCTTATCATGGCAGCATAAATGTTCATCTAGCTAACTGTAT TTATCACAATTGAAACGAATTTTCTTTATTCATATCTAACATATTTGGGGCAATACTTATTCATATGTAACTAGGCCTAT ACAATGACAATTTTCTCTCAAGAAAGCATGTTACATAATTTCTTGTTCTATATGTCACTAAGTGCAACTTTGAAAACTTG TTCGAAAACCACATTGAAGCAAAAATCACAGTGGACATAAAGAAAAGCTCAGGGAACTAGCTTTTGTCAACCGAATTTTG GCTTCACTGTAGTTTTCGAATGAATTTCCAAACATGCACTAAATACTTTTTCCCCTGCCCCAACAAAGTGATTTTTCAGT AGGGTCTCCCATTGGTCATATAATACTGCCCTCCATGCTGCAAGGAAATATCATTTTCCACTGTGGCAAATGATGCTTTG ATTTATAGAAAAAGTTATTCTGAACATTTTTCAGGTCTGAAAACTGATATCCTAAATTTATTGTATATAATAAGAAATTT TGCATCCTAATTACAATCCAGTAAAGAAAAGCATGCATTAGCCAATAACTTTTTTTTTATAAGCATTAGCCAATAACTAT TAATGTAATTATCTCTGAGATAATCACTTTTTCTTTACCAATTTTCTTTTGCTCTACAGAGATACCAGATCCAGTACCAA AGAAAACCTTAGGAGGATCCCTTGATAGAGGTTTGTATTGACTTTTCTCATATTTCAATTTGCATTATTTTTAGCTGATT CGTTTTACGAAATCCCTCTTCAAATATCCTTTCTAGATATGATGGTTTTCATCATCAGTTTTTCCAGACAGCTTATATCC TCTTAAACCATTTACTTAGTACTTCTATGGTCTACAGATATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAA TGTGAAGGCATGGGAAGAAAGTGAGAAATCCAAAGCAGAGAATAAGTAAGATTCATATTTTTCAGCTAATTATTTTCTAG GCATAAGGTACAGTTAAATTGTAAAAGAACCCTAGCTAGAAAATAGACAATATATGAAATAAGTAAAGCATGATTGGTAA CACATTCATCGTAACCTTCTTCATCATATGCTCATGTGCTAGCGTATGTTTATACTGGTGTCAAGGAATATCCAACTTTA GAGTGTCATATAAAAGCACTTTATTGTTTGTGTAATTATGTTCAGTATTTCCTAACATTTTTTTTTTCTGTTAACAGAGC CCAAAAGCAGCTCTCTGCTGTTGCTGCTTGGGAAAACAGCAAAAAGGCAGCTCTTGAAGCTAAGCTTAGAAAAATGGAGG TAATACTTACAGATATTTGTTTACATGATGATGACACTGCTTTTTCTATCATACATAATGTCATGAATCATGATGCTTGT TGTCACAACTCACACAGAAGCAAATTTTTCTAAAGGTCTAAATAATATAATCTAGATATGAAAGATTTAAAATAAAGGTA AGGTTTATGTTGGATAGAATAAGATATATGATAATATGCTTATGTTGACAAAAAGAAAATGTAGACTTTTGAGCCCACAA ATTCTCTCTATCTCTTTTTCTTTTACTCTTGTTGGATTCTTACCCGACATTTGGAACTTTTAAGTAGATAGTTCTTTAGC TTTTTCTCAAATGGTATCAAATACCTTTAGAGTAAAGAAATTGAATCCTTCTACATAAAGAATTATGCTTTTAGTATTGA CACGAATGACTCTTATGATTTAGCGCATGTTTGGATACAAGGTGAAAAATTTGGGCATCATAGTAGTTTTTTACCGTGTC TCTAAACATGCACTTAGAAATATTAAATTCAACTTCTAACAAACTCTTCCTGAGCAGGAACAACTAGAGAAAAAAAAGGC TGAATATGGTGAAAAGATGAAAAACAAGATAGCCATGATTCACAAGCAAGCAGAGGAGAAGAGAGCTATGGTTGAAGCCA AGCGTGGTGAAGAAGTTCTCAAGGCAGAGGAAATAGCTGCAAGACATCGTGCAACTGGAAGCACTCCAAAGAAGCCCTTT GGATGTTTTTAATGTGTTTTCAATGCTTTTGGGTTTGAATTCTCATACCAATGGTGAAATTTTGTGTATTTATATGTCTT TCTTTTCTCATGGTGTTTATGTGTGTTAGAAAGTAATGGAAAGGGAAAACATACAAAGTTTGTAACATACAGGACAGCTC TTAGATCTGTTGCTTATATGAAATGTTCAATGGTATTTATTAATGTATTGATTTTCTTATAACCACTCTATGCGTGATCA AAGTTTAAACAAAAGGTTTTTTTTTTCTTTCTCTTCATTGTTAAGAAAATATTTGTAATACTAATGAGGCTAAATTAAAT GATTTTGAATACCAGTTGAGTGTAGAATCAACAGACTTTCAATCTAATTTATGAAAGAAGTTCTGATCATTTTTTACTTG AATTGAGTGATAATGTCCGC
CDS sequence (LotjaGi3g1v0380700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGCTCCAAACTCAGGCGGTGGAAACCGTTCCCGTTCCGGCTCCGGCTCCGGCTCCGGTTCCGGTGGTGGAACC CGAGCCGCCGCTGGCTGAGGCGCCGGTGCTTGATGAAAAGAAACCGGTGCTGGCTCCACCGCCGCCACCTGCAGCAGATG AAACCAAGGCTCTTGCTGTTGTTGATAATGAGAAGATACCAGATCCAGTACCAAAGAAAACCTTAGGAGGATCCCTTGAT AGAGATATTGCTCTTGCAGAAATAGAGAAAGAGAAAAGGTTGTCTAATGTGAAGGCATGGGAAGAAAGTGAGAAATCCAA AGCAGAGAATAAAGCCCAAAAGCAGCTCTCTGCTGTTGCTGCTTGGGAAAACAGCAAAAAGGCAGCTCTTGAAGCTAAGC TTAGAAAAATGGAGGAACAACTAGAGAAAAAAAAGGCTGAATATGGTGAAAAGATGAAAAACAAGATAGCCATGATTCAC AAGCAAGCAGAGGAGAAGAGAGCTATGGTTGAAGCCAAGCGTGGTGAAGAAGTTCTCAAGGCAGAGGAAATAGCTGCAAG ACATCGTGCAACTGGAAGCACTCCAAAGAAGCCCTTTGGATGTTTTTAA
Protein sequence (LotjaGi3g1v0380700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAELQTQAVETVPVPAPAPAPVPVVEPEPPLAEAPVLDEKKPVLAPPPPPAADETKALAVVDNEKIPDPVPKKTLGGSLD RDIALAEIEKEKRLSNVKAWEESEKSKAENKAQKQLSAVAAWENSKKAALEAKLRKMEEQLEKKKAEYGEKMKNKIAMIH KQAEEKRAMVEAKRGEEVLKAEEIAARHRATGSTPKKPFGCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 202 | 202 | 3.0E-100 | – | |
| MobiDBLite | 1 | 54 | 54 | - | – | |
| PANTHER | 1 | 202 | 202 | 3.0E-100 | – | |
| MobiDBLite | 14 | 30 | 17 | - | – | |
| Pfam | 39 | 88 | 50 | 1.0E-8 | ||
| Pfam | 92 | 197 | 106 | 2.4E-32 | ||
| Coils | 120 | 154 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0380700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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