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LotjaGi3g1v0380800.1

Overview

Field Value
Gene ID LotjaGi3g1v0380800
Transcript ID LotjaGi3g1v0380800.1
Lotus japonicus genome version Gifu v1.2
Description tRNA-specific adenosine deaminase 1; TAIR: AT1G01760.1 denosine deaminases acting on tRNA; Swiss-Prot: sp|Q9V3R6|ADAT1_DROME tRNA-specific adenosine deaminase 1; TrEMBL-Plants: tr|A0A151S3Q7|A0A151S3Q7_CAJCA tRNA-specific adenosine deaminase 1; Found in the gene: LotjaGi3g1v0380800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:77337834..77343116) extracted from Lotus japonicus Gifu genome v1.2.

GAAAATTGGTCAGGTTCAGAAAGCCCAAAAGTTGAAATGGGTTTCAAGCTAGCAACCTTTCATCTCTCACTCTTGAGTTC ACTGCCTTGGTCGAGCTCAACCTTCAACCCTGTCAATGGCGTCTTCTGAAGAAACGAGTTTTGGTGAAAGGGTCTCCGAA AAGGTTCTCTCTCTGTACACTTCTCTTCCCAAGAAAGGCAAACCTCAAGGCCGTGAAGTCACCGTTTTGGCTGCTTTCCT TCTCTCTTCTCCTTCCAATGGTTCTCTTCTTCTCTTTCAATTATATAAATCAATACCCACTAACCAAATTTCAATTTTTC AATCAAAGTTTCAGGAAAAAACTCATCTTTTCACTTTGTTTGTTGTGTTGAAGAGTTGAAGGTTGTTGCACTAGGAACAG GAACTAAGTGTATTGGACGTTCTCTCTTACGCCCTTATGGTGATGTTGTTCATGATTCTCATGCTGAAGTTATAGCTAGA AGAGCATTGATGAGGTTTCCTTTCCCTCTCTTTTTCACTTCCATTGTTTTTTATATAGTTTTGCTTATCTTGCATGTAGG CTGAATTTTACAGAAGTTTGTGTGCATCAGATATGTCAATTTTGAATATTGATGTTGTATGTATATGTAGGGTGAATTTT GCAAAAGTTTTTATGAAAGTGTAATGTAGGGTGATAGTCTTTGTTATCAATTGATATAATGTGTTGCTATGTGAGGAGAT ATTATTTTGATTGGTTCTATTCACACCAGGTTCTTCTATACACAGATTCAACATCTTACTGAAACTAGTAGTAACCGTGA GTGTACCAATGGGGGAAAACGATTCAAAATTGATGATGGCAACTTAGTATTCGAGTTGGACTCAGGGTCAGGGTGCCTTA ATAAAGCAAAATATACCATGAGAAGGGGTTGGAAATTACATATGTACATATCACAATTACCATGTAAACTATCTTATACC TTCCCCCCCCCCCACCAATATCCTCCCTTTATTTGTTACAATACGGGTTAGGTTTAAGGGTAATTTTGCCTTGGTGCTGC ATTTTGTAGGTGGAGATGCATCGTTGAGCTCGCTTGTCCCTTCTCTGGAAACTGCGGCTTTAGGAGAAAGTGGTTCACCT TTGGGTAAGCTAAATCATTCCACTGGTAACTTTAACAACATTTAACATTTCATATATAAAATGGCTAAAGCAAAAAGAAA CCTTAGACACATGACATTCAAATAACTACAAACTTTCTTAATAGCAAATACTTGTGCTGAACTCTATTTCCTTCTATTCT TCAAAGAATGCTTTTCGAATATAATTTTTATCATATCTGACACCACAGTGATTTTGGAATAGTATATCTGTATATTTTAA ATTAAAAGGTTGGTTGGATGTTGTTTTTCTGCTCTGAGAAGAAATACTTTTGCCTATAATTCCAGTTAATGGTTTGAAAC AAAAGGGGATGGTCCAGAGGAAGCCAGGTCGTGGTGATACAACTCTTTCAGTTAGTTGCTCTGACAAGATAGCCCGTTGG AATGTTGTTGGTGTTCAAGGTTAGATATGCTTAATCTAAGTCTGTTTGAGCTCTGGAATTCTTGCATGGAAATCAGCTGT GATGTGATATTTTCAAATTCCTGTAATAAAATCACAGTTTTAATACATTGCATGAAACATCAATGACACTGAGAATACTG GTGTTGGTGTGTATGTACATTTTCTGTATTAACTACATTTAGTTATATGAATATGACACTTGTTGATGGATTTATTTATT TATTACAGATACATTTTTGTATTACGACGAGTGCATAAAATGTTCCTAGTTGAATGTAAGCTTAAATGTTAGGAGGTATA TCAGCTGACTCAATGGCTAACACAAACAAACAGTTACATTTGCAAACATTACTTAGAGATTTGTCTTGGTCTTGTAGTGT TATCTAATATATATTTGGATATGATCATGAGTTAGATTAGTGTGGTTGATTACTTGATTATTATTTTTTTCATTTAACTG TAGTGACTTTGTTTCTCTTATACCAGGAGCTTTGCTTTCCTACTTTCTTCAACCTGTATATCTTTCTTCAATTACTGTCG GTCTGCCTCATAACAGTCCTGAAAATTTTCAGTTTGAGGATAATTTGAAAAGAGCTTTGTATGATCATATCCGATCCATG TCTAATGAGCTAACATCTCCATTTCTAGTGAGCCAGGTCTGTAGAATATATAGTATCTTCATGAGAAAGAATTGAGTTGG AGGATGCTGACTTTTGTTTATTTTTTGATTTGGTAGCCGCTATTTCAAGCTGCCCCAGTTCCACCAAAGGACTTTCAGCA ATCTGAGAGTGCTGCCAACACTTTAACATGCGGGTGCGTGTATCAAATGTCAGCAAAGTCATGGAACTTTTGTAGTTTTA TGTAGCGTTGAGCTGAATGCTAACTGTGCAGATATTCCATATGTTGGAATGGGTGTGGGTTGCATGAAGTTATACTGGGA ACTACCGGAAGAAAGCAAGGTACCTCTGCAAAAGGAGCACTCTACCCATCATCAGAGTCATCTTTATGCAAGTAAGCTGA CATGTACTGTATTTGGAATCAATGTTGTTAAATAGCGGATATCGCGGTGCTGAGGGCTCGCTGATATCCGCTATTTTCCA CTATGAGGGCTTGAAATAGCGGATTTTTGGCTTTCCGCTATTTTCCGTGATTATCAACTCTGGTTGGAATTTTGATTGTC AAGCACTGGTCTAATTATAAATATTTTTCCCCAGAAAGAGGCTGTTAGAGGTCTTCTTGTCATTGAGGCAGGGGTGCTTG ACCACTTGTCTGGAAAAGGGGATTACATATCGAGAACTTAAGGTATTCTTAATCTTCTTCACATTTTCTTCTCACGGTGG TCTAATATATGTTGCCTCTCCAAATAGCTGGGAAGAATGTTTATGATCTGTCATCTCTTCACTTGTTTTGCATGATAAAT CCTTTGCAGGACGGGGCTGAAGAATACCATCTAGCTTCTAAATTTTTTAAAGGGAAGCCACCTTTTAGCAACTGGTTCTT GAAACCCTTGGACTGTGAGACATTTCCCATTTCAGAATAGTGCATTAGTGATTAGTGCATTTAGTTATCTGTCTATAATC CCATCTTTGGTTATGCCAATTGAATTGCATGCAAAAATCAATGAAGCTTCTAAACACTCAAATGAAGAAGAATAACAACT TAAAGAATGAAGCAGAATAAAGAGGGATAGAAGTTTGGAAAAAAATTTGGTTTTCCTCACTCTTTTAAAGAGACGGTGTG TACTGTGAAGAAAACCCAGCCAGCCTCCTCAACAAATCTTTCCAAAAAGCTTAGTCACAATATCTATTTTATCTTTCTTT TCACACTTCAATGACATTGATAGAACATAGGTGTTGGCTTCATGTGGAGAACCAATACCTGATTGGAGATGGTCCTAGCG TTTGGCCATGGAAGATAACTTGTCATCAATGGCTGCGAGCAATTCGGTGAGAATATCAGAGACGTTTTTGGGAGGCATGA TTGCAGTGAATGAAATCGTCAATTTGGTTGGAAGAAATTGTTCATAACCAAGAGAACCATTTAGAACTTAAGAATTTTAA AGAACAAAAACAAATAAGGAGATCAAAACTCAATTTTCTGCATATCATTTTCCATGGATTCCATACAATTTTGTTATGAT AATAATTCCTAAAGATATGAATTGTCTGACAAGTGGCAAGATCCTATCATGTCGAATATTCTTAAAAGGTAAACATAACA AAGGTAGGAAGTATACTAATTAAACTCAATCCATGTTTGCTTATATTATAGTATAAGTTCTTTTGCACGTGTTTGAAAGA GCTTATGTAAATAGATTATGGTCTACATCTAAGTTATTTGTAGCTTATTTCATAAGCTGTTCAGATTAGCTTATGAATAA ATTTATTTTTACTTAACATATTTTCAGCATATTTCAATAATATCAAATTAGCTGATGAACAAGTACTTATAGCCATATGC GTTTTTTTTTTGGTCAAAAGCCATATGCGTTTAAATAAGGTGTTTACCCAAATGCAGCCTACACAGTTTTGGAGCAATTT AGATTTATTTGTATTTCTTTTGGGCCTTCCAGTAATACTCTCTCAGCTATGTATGAGTTGGGCTTATGGACTCGCAACTA TCAGTTCCAATCTCTAATACTTGCTATATCAAGGCTGTTGCAATTGCTCCCCAGTTCACATTTCCTTAGCAGTTTACACC CTATATATGTTGCTCACACTGCTAGCTGTGACATTTTTTTTAATTTATAAAGCACCTGTTATCTGATCACAATTCAGATA CCAACTATTTCGGATTTAGGATTTAGTTTTAGTTAAGGCTCTTCACCCCTCCCCCTAGATGTATTGTGTGAGGCTCAAAC CTAGAGCCCTTCCTGCATGTTTAGTTTGCGTTGCCATCTGAGGTATCACTCGTGGGTACTATTAATGAAAAATCGCCCTT AAAAAAAGTTGACTAGAGGATTACACATTAAATGGTTCAGCTTGTTTCACCGAAATCTTCATAAATGAAATTGTAAGATT GAAGCAAGCTATTTTTCTATTATGACTCGTTGACATCCAAATGAAAAACAAAATGGCACGTGGATTGTGCATTTGCGTCC GTGTTCATAAAACAAAACGTGAAATGCTCTACAACTTTTTTCAATTTTTCAACTAGTCATCATCCCAAAATAGCTAAAAG TTCATAAATACTATGTTAGTACATTAATCTGTATATTTTGTTGATTACAGCAATATAATGCATTTTGGCCTAATAGTCAT CTAATTAGCCCTCTGATTCTATGTATATTTGTTGACTTTGTAAAATTAATGGTTTTGGCCAAATTGCAAAGCACGCAGAC TTAAAAGGAAAATCGCGTTGCTTGATTCTTGGATCCCTCTATTGCAAAAGTTCACATTGACATTTAAAAGAAGCAAGCAC CTGGTTAGCTTTATTGGTATTAATCAATGTATCTTCACAATCGATAGTCATGAGACTAACTCTTCATTCCACTGTCAACG CACTAAACGGCATGGGGCAGACTAATGAGTTTACTTACTTAAGAAACGTAGTGTTAAACCACTATATCAAATATCATGTG GCTAGCTGAGCGCAAGCACAATAGACTAATAGAGTAGCTAGGAAGAATAGGTGGATCTTAAACTGATAATGATTATATAT ACATGTCTAATATTTTTGGACCATCTGAAGTCATTGACTAGTCTGCACTGAAAATTTGTATCTTATGTGGTGCCCCTTCC TCC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0380800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCTTCTGAAGAAACGAGTTTTGGTGAAAGGGTCTCCGAAAAGGTTCTCTCTCTGTACACTTCTCTTCCCAAGAA AGGCAAACCTCAAGGCCGTGAAGTCACCGTTTTGGCTGCTTTCCTTCTCTCTTCTCCTTCCAATGAGTTGAAGGTTGTTG CACTAGGAACAGGAACTAAGTGTATTGGACGTTCTCTCTTACGCCCTTATGGTGATGTTGTTCATGATTCTCATGCTGAA GTTATAGCTAGAAGAGCATTGATGAGGTTCTTCTATACACAGATTCAACATCTTACTGAAACTAGTAGTAACCGTGAGTG TACCAATGGGGGAAAACGATTCAAAATTGATGATGGCAACTTAGTATTCGAGTTGGACTCAGGGTCAGGGTGCCTTAATA AAGCAAAATATACCATGAGAAGGGGTTGGAAATTACATATGTACATATCACAATTACCATGTGGAGATGCATCGTTGAGC TCGCTTGTCCCTTCTCTGGAAACTGCGGCTTTAGGAGAAAGTGGTTCACCTTTGGTTAATGGTTTGAAACAAAAGGGGAT GGTCCAGAGGAAGCCAGGTCGTGGTGATACAACTCTTTCAGTTAGTTGCTCTGACAAGATAGCCCGTTGGAATGTTGTTG GTGTTCAAGGAGCTTTGCTTTCCTACTTTCTTCAACCTGTATATCTTTCTTCAATTACTGTCGGTCTGCCTCATAACAGT CCTGAAAATTTTCAGTTTGAGGATAATTTGAAAAGAGCTTTGTATGATCATATCCGATCCATGTCTAATGAGCTAACATC TCCATTTCTAGTGAGCCAGCCGCTATTTCAAGCTGCCCCAGTTCCACCAAAGGACTTTCAGCAATCTGAGAGTGCTGCCA ACACTTTAACATGCGGATATTCCATATGTTGGAATGGGTGTGGGTTGCATGAAGTTATACTGGGAACTACCGGAAGAAAG CAAGGTACCTCTGCAAAAGGAGCACTCTACCCATCATCAGAGTCATCTTTATGCAAAAAGAGGCTGTTAGAGGTCTTCTT GTCATTGAGGCAGGGGTGCTTGACCACTTGTCTGGAAAAGGGGATTACATATCGAGAACTTAAGGACGGGGCTGAAGAAT ACCATCTAGCTTCTAAATTTTTTAAAGGGAAGCCACCTTTTAGCAACTGGTTCTTGAAACCCTTGGACTGTGAGACATTT CCCATTTCAGAATAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0380800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSEETSFGERVSEKVLSLYTSLPKKGKPQGREVTVLAAFLLSSPSNELKVVALGTGTKCIGRSLLRPYGDVVHDSHAE VIARRALMRFFYTQIQHLTETSSNRECTNGGKRFKIDDGNLVFELDSGSGCLNKAKYTMRRGWKLHMYISQLPCGDASLS SLVPSLETAALGESGSPLVNGLKQKGMVQRKPGRGDTTLSVSCSDKIARWNVVGVQGALLSYFLQPVYLSSITVGLPHNS PENFQFEDNLKRALYDHIRSMSNELTSPFLVSQPLFQAAPVPPKDFQQSESAANTLTCGYSICWNGCGLHEVILGTTGRK QGTSAKGALYPSSESSLCKKRLLEVFLSLRQGCLTTCLEKGITYRELKDGAEEYHLASKFFKGKPPFSNWFLKPLDCETF PISE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10910
2 400 399 2.3E-133 –
PANTHER
PTHR10910:SF62
2 400 399 2.3E-133 –
SMART
SM00552
8 401 394 1.9E-95
IPR002466
ProSiteProfiles
PS50141
54 400 347 52.488
IPR002466
Pfam
PF02137
54 394 341 3.0E-82
IPR002466

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0004000
Molecular function Adenosine deaminase activity Catalysis of the reaction: adenosine + H2O = inosine + NH3.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0380800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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