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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0382500 |
| Transcript ID | LotjaGi3g1v0382500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bestrophin/UPF0187; TAIR: AT3G61320.1 Bestrophin-like protein; Swiss-Prot: sp|Q9M2D2|YU88_ARATH UPF0187 protein At3g61320, chloroplastic; TrEMBL-Plants: tr|K7KC35|K7KC35_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0382500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77663815..77667653) extracted from Lotus japonicus Gifu genome v1.2.
CAACTCTACTTGGCATAGGAGTGGAGATGATTCTTGAAATGATCATTAATGCAGTTCTACATGGAACCTCCTTCAATGCG TCCTTGATAAGGACGCCACCAATCAACTTGACTGAATTCCAAGCTTAAGCGAAGGAATATGAAGACACAATTAATCACAT CAACTAGGAAAAAGAAAGATCAATATCTAATCGGGAGTTGTAATAAAGGTGAAAACCCTGTATATCAAGCAAACGAGAAA ACCCATGAGTTTTTCCCGATGTTTCCTAGAAGAAGATGGAGGCATCAGTCACAAAAGAAACAATACCAAACAAATCCCCC TCCCCTCCAACCATAGATCCATAGTATGTCATTGGCTCCTTGTTCGCAGGTCTAGTGGTGCTTTTCGGAGCCCTATCAAT CAATTTTTCTATAAGAAAAAAGAATAGTAATTTATGAGTTATGCAACTCAAATTTTGTTTCTTCCAAGTTCCAAGTAAGT TGTCATGTATATGGACTTTATGACACATAAGGCATTTTCATTTCAATTTTTGTTTTATTGCTGATACTCTACTTGAAACG TGTAAAACCATGCTTCACACACATTTACCAGCTCTTTACAAAGTAACCTACCCATTCATCTCCACCAACCAATTTTAACC ACCTCCCTTTCTCCTCCACCACCACCTTCCCACTCTCAAACAACATCATGCTCCCTTTCAAACTCAAACCCACTCACTCC TCCAACTCCTTCACCACCAACACCCCTCCAAATCCAACTCAATGAACCACCCACTCCCACCCAGAACCCAACTCAAACCC ACCACAACCTCTACCCTATCTTCCCAATTCACCCCAAAATGCCACCACCTCAACCTCCACCTCATCCTCCCTTCCTCCTC CAAACCCAAACCCCTCACCACCACCTGCTCCTCCTCCTCCCCAATCCGACACCTCATCTCCATCCTCCGCTTCATCCCCG ACTGGGCCGACACCGTCCAGGAACGCGGCATGTACAAAAACCGCGCCCTCTACGCCCACTCCGACTGGCGCACCCACCGT AGCTCCCTCCGCCACTTCCGCCACCTCCTCTCCAGCTTCTCCTCCCGCGTCATCCTCTCCCTTGCCCCCCCCGTCACATT CTTCACCGCCTTCGCCGCCGTCATCTCCGCCTACAACTCCGCCGTACTCCTCCACTTTCTCCCTGAATTCTTCCCCCTCC TCAGAGCCTCCACGCTACCTTACCAGCTCACCGCCCCCGCCCTCGCCCTCCTCCTTGTCTTCCGAACCGAAGCCTCCTAC TCCAGATACGTCGAGGGCAAGAAGGCTTGGACGATGGTCCTTGCCGGTGCCCATGATTTTGCCAGGCAGGTCATGGCTTT CGCTGATGCTCCCTCTGATTTTTCCCTCAAGAAGGCGCTCTTGCGTTATATCATCGCCTTCCCTCTCGCCCTCAAGGTTA TTTTGGTTCTCTCTTTCTTGAGTTTTCATCCATTTTTTTACTTGTTGTGTGTTCTGTTCAAGTTGTTTTGGGTTGGATTC TTAGTTACATAAGGTCAAAATAGTTATGTGCTTGTTGGGTTTCCGTCAATTTTGGTTTTTTTCAATTATAATGTGAAGGG TATTTGTAAGGTTTTGTTCAAGATTTGTGAGCTCAATGGCTAAGGTCATTCTAGTTCCTAAGGTTGATATGTAGGTTATT AGTCATATGAAGAGGGTAGAGGGAAGCCAAAAAGAACATTGGAAGATATTATTAAAAATGATCTCATTGTCAATAATATC GTACAAAATTTGATTTTGGATCGAGCTTAATGGTGTAGAGTGAGCTCAATGGCTATGATGTCACTTAGTGGGATAAGACT TTTTTTTTTTTTGAAATAGACTTGTTGTTGTTGTTATTGTTGGATTGGTAGTTACTCGAGGTCAGAATAGTTCTTTGGTT GTTGGGTTCCCATCAAATTTGGATTTTTTTTTCAATGTCAGTGTGAAGGGTGTTGTGGTTGTTAGGTTTTTTTCAAGTTG TATTGTGTGGGGTTTTTAGGTTGGTAGTTGTAGTCTCACCGTTTGAACAATTTGAATGCAGTGTCATGTGCTGTATGGAT CAGATATTAGGAGAGATCTTCAACATCTGTTAGATGTAGATGATCTAGCGGTGATCATGAATTCAAAACATCCACCACGC TGCATTATTGAGTTTATATCACAGAGTATTCGGCTGCTAAAATTGGAGGATTCTAGAAGAAATGTCCTGGTAAGAACTTT TTTGAATTGTTCGCATTTCAGCAGATATTGAGTTCTGGGAACATTGTTTGTGTCACAAGTGTGAATTTATGACTCTCTAT TTAGGTGGCAAAGTTGTAGATATGGATCTGTTAATATAACACTTCACTCTATTGTGTAACATATCCTTCATTGTGTTACA GCAATCAAAGATCACCTGTTTTCTTGAAGGAATTGGCATATGCGAACAACTCATGGGTATTCCCATTCCATTGTCATATA CTCGCTTGACGTCACGGTTTCTTGTCCTATGGCATCTGACACTCCCTATCATACTTTGGGATGATTGTCAATGGATTGTG GTTCCTGCTACCTTTATTAGTGCTGCTTCTTTGTTCTGCATTGAAGAAGTATGTCTCTCCCTTAGCTTGATTCATTTACT ATTTAATATATCAAATTATGCTATTCTATAATTTGTTGTACATGTAGTTAACAGAATTAACACTTTTAGGCTATTAAACA TTTACTGGTTTTTCTTTCTTCTGTGTAATCATTAGGTAAACAAATCGAGTTTGACAGTCGAATGTTGAAATATAGGTGAG AATAATTGTGACTTATAAAATATGTAAAGAAACTATGGGTGTATTTGCATACATATAAAATATTTGGTACATATTAACAG AGTGCATATTTTTTATTTTGTGCCCAGTAGCTAGAGACTAGCTTTTTATTTCTACCACGCATAACTGGCTTTGCATAGAG TTGCCAAAAAAACAGACTTTAGGACTTTTGCGTAGTTGGAACTTGGAATAGATTAGGGAATGCTCAAATCTAAACTGAAC ACAGGTAGAAGTGATTGATGGATGGATTCTTGAAATGCAACTTCAGATTTTCCAGTTAGAAGAAAGCTAATCCAAAAATG TGAATATTGATTGCTGTAGGTTGGAGTACTTATAGAGGAGCCATTTCCAATGCTTGCACTTGATGATCTCTGCAAGAAGG CCCAAAACGACATCCAAGAAGCCATTGCAGCGGAGAACTCAATTCATGTGCACCTGGTTGCAAAGCAAAACCGCCACGCC ATAAAGCCTTCACCAAATGGCAGGCCTAACTCTTAGATGAAAGGTTCACTATGACCTTCGTCTTCAACTTTTGAGGCTGA TCTCCATGCAGTACTTGTTTAGCCCAATTGATTATGGATAGGAATTATATGATGAAATCACTCATGATAATCATGCTACA CTTGTACCAGCCCACCAATTTCTTTAGGAAATTGCCTCAAATTCGCCTGGGCTTTAGGAATGTATTCTACTTATGAAGGG GATCTGTATATATCATAAAATCATAATCGTGTAAATATAAAGTCTTAGGCCTTTATTTGAATAGATCATCATCTATGTAA TTTTAGTGCGTACTTTTGCTATCCTTACTGCATGTTCATGTGAATTTGTTTTGGACGCCAACAGCTTATTAGGCAAGAGG TGAGAGATCCTTTTTCCCCGTGGTGTGGTTAAACTTTGAAGTGCTGTTTTCATTTTTTTAAAGCTCTTCAAACTCTCTGG AAATTCCCCTCATGTCTAACGAAACATTGCACAAACCATAAGGATTACATTAATACAATCAAGATTTATTTGATCAAGA
CDS sequence (LotjaGi3g1v0382500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCACCCACTCCCACCCAGAACCCAACTCAAACCCACCACAACCTCTACCCTATCTTCCCAATTCACCCCAAAATG CCACCACCTCAACCTCCACCTCATCCTCCCTTCCTCCTCCAAACCCAAACCCCTCACCACCACCTGCTCCTCCTCCTCCC CAATCCGACACCTCATCTCCATCCTCCGCTTCATCCCCGACTGGGCCGACACCGTCCAGGAACGCGGCATGTACAAAAAC CGCGCCCTCTACGCCCACTCCGACTGGCGCACCCACCGTAGCTCCCTCCGCCACTTCCGCCACCTCCTCTCCAGCTTCTC CTCCCGCGTCATCCTCTCCCTTGCCCCCCCCGTCACATTCTTCACCGCCTTCGCCGCCGTCATCTCCGCCTACAACTCCG CCGTACTCCTCCACTTTCTCCCTGAATTCTTCCCCCTCCTCAGAGCCTCCACGCTACCTTACCAGCTCACCGCCCCCGCC CTCGCCCTCCTCCTTGTCTTCCGAACCGAAGCCTCCTACTCCAGATACGTCGAGGGCAAGAAGGCTTGGACGATGGTCCT TGCCGGTGCCCATGATTTTGCCAGGCAGGTCATGGCTTTCGCTGATGCTCCCTCTGATTTTTCCCTCAAGAAGGCGCTCT TGCGTTATATCATCGCCTTCCCTCTCGCCCTCAAGTGTCATGTGCTGTATGGATCAGATATTAGGAGAGATCTTCAACAT CTGTTAGATGTAGATGATCTAGCGGTGATCATGAATTCAAAACATCCACCACGCTGCATTATTGAGTTTATATCACAGAG TATTCGGCTGCTAAAATTGGAGGATTCTAGAAGAAATGTCCTGCAATCAAAGATCACCTGTTTTCTTGAAGGAATTGGCA TATGCGAACAACTCATGGGTATTCCCATTCCATTGTCATATACTCGCTTGACGTCACGGTTTCTTGTCCTATGGCATCTG ACACTCCCTATCATACTTTGGGATGATTGTCAATGGATTGTGGTTCCTGCTACCTTTATTAGTGCTGCTTCTTTGTTCTG CATTGAAGAAGTTGGAGTACTTATAGAGGAGCCATTTCCAATGCTTGCACTTGATGATCTCTGCAAGAAGGCCCAAAACG ACATCCAAGAAGCCATTGCAGCGGAGAACTCAATTCATGTGCACCTGGTTGCAAAGCAAAACCGCCACGCCATAAAGCCT TCACCAAATGGCAGGCCTAACTCTTAG
Protein sequence (LotjaGi3g1v0382500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHPLPPRTQLKPTTTSTLSSQFTPKCHHLNLHLILPSSSKPKPLTTTCSSSSPIRHLISILRFIPDWADTVQERGMYKN RALYAHSDWRTHRSSLRHFRHLLSSFSSRVILSLAPPVTFFTAFAAVISAYNSAVLLHFLPEFFPLLRASTLPYQLTAPA LALLLVFRTEASYSRYVEGKKAWTMVLAGAHDFARQVMAFADAPSDFSLKKALLRYIIAFPLALKCHVLYGSDIRRDLQH LLDVDDLAVIMNSKHPPRCIIEFISQSIRLLKLEDSRRNVLQSKITCFLEGIGICEQLMGIPIPLSYTRLTSRFLVLWHL TLPIILWDDCQWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDDLCKKAQNDIQEAIAAENSIHVHLVAKQNRHAIKP SPNGRPNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 109 | 109 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PIRSF | 4 | 408 | 405 | 2.0E-188 | ||
| PANTHER | 31 | 405 | 375 | 3.7E-155 | – | |
| PANTHER | 31 | 405 | 375 | 3.7E-155 | – | |
| Pfam | 92 | 368 | 277 | 1.8E-40 | ||
| Phobius | 110 | 131 | 22 | - | – | |
| Phobius | 132 | 150 | 19 | - | – | |
| Phobius | 151 | 167 | 17 | - | – | |
| Phobius | 168 | 408 | 241 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0382500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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