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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0383100 |
| Transcript ID | LotjaGi3g1v0383100.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT5G41315.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3; TrEMBL-Plants: tr|D7UPI5|D7UPI5_LOTJA BHLH transcription factor LjTAN1; Found in the gene: LotjaGi3g1v0383100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77705361..77711575) extracted from Lotus japonicus Gifu genome v1.2.
AGATACATGCACTTCTGACGATACCAGCAGTTTGTGGTGGTTAGACAAATTTTATGAAAGAAAAATAATAATTCTACATT TTGTGGCGGTTTACAGGTTCATGTAAATATCACTCTCAATGATTCAGCTGGGATTTCAATTTCTTCGCTGCTATTGTTTT TGTAGTAACATAATAAATACACTTGACTTGGGTACACATGATTACTCTATACACTGAAAGTAACTAAAGTGAATTTGAGC AGTGTTGTAATGCCGTTTACTGTTGAGTGTCTGAAAGTAAACAAGCAAAGGTATCTTCATCTTTTTCTTATCCCTCTTCT TTTATAACAAAAAAGGTAAGTAAATATTGAATGAAAGTGACTGTGGCAGCAGCTAGCAGGAGAACAATGGCCATTGGGAG CCCAAAGCATGAGAAGAAGATGCAGGAAAAGAACCTGAGTGCACAACTAGCTGTTGCAGTCAGAAGTATTCAATGGAGCT ATGGAATTTTCTGGGCACCTTCAACCACTCAACAAAGGTAGGTATATACATGTACATATTTATAAAAAATAAAAAAAAAC ATCTTGGAGTTTTGTTAATTTGCTTCATTCACTTAACCAGCCTCTGGATCTCTAGTTGTGTGAAGAAGTGCCACATGTTG ATGTGGGAGGGAACTCTTGAGAGTTTCTGCTTTTTTATGCAACAAAAATAGAATGTTATCTGCAGAGTCAACGGTTATGA TTTCAGATGAAATTAAAGATCTTTTTCCCTTCACAAATACATAGAGGGAGCTCAGTCCCAGAATTCCTGGAGGAGTTTTC ATGACATTAGATTGGAGTCAAAATGAAAAAATATGTAAATTATTTCAGATTTTTTCTCATTTTAGACACAAGTAATAAAG GGCAAATCTGATGCTACTAAGGAAGGGTCATACTCACTTCGTGGATCTAATGTAGACAACCTAACCTTATATTTTTGTAA GAGGTTGATTCCGTGTCTCGATCCTGTGACTGCAAAATCAACAGTGTGCTGAGGCTCGCCCTCTGAAAAAGTAAATGGAG CTGAACATTTATAAATTTAGACACTCAAAGAGGGGAGGAGACTCCTGAGACATCATTTTTCACTATATCTCTCTCTTTTT ATTTACTCAATGAGTGTCTGTTGCATGTCTGCACTGTGCAGATGTGTACGGATTATTTTTCTTTGTGATGAAATTGGAAA CTTGATGCATTTCCATTGAAGAAACAAATAACTGGGAAAAAAACAGATAAATGCAAATGAGATACAGGTTAATGTTATGT AATTAATAATTATGTGCATGAGAAATAGGTCACTTTGATCAGCTTGGTACTCAACCAATGTTATGTGAATGGTGTGATAA ATAAGCAGAGAACTGGAATGGAGGGATGGGTACTACAATGGAGACATTAAGACAATGAAGACAGTGCAAACCATGGAAAC TAAGGCTGATAAAATAGGCCTGCAGAGGAGTGAACAACTGAGAGAACTATACAAGTTTCTTCTTGTAGGTGAAGCTGACC CACTAGCTAAAAGACCTTCTGCTTCATTATCTCCAGAGGATCTCTCAGATTCAGAGTGGTATTACTTGGTTTGCATGTCC TTTGTGTTCTACCCCAACCAAAGGTACCATATATGCTCTAATTTCATTTAATTCATATAAGGGATTAATTAATGTTTTGT TTCTTTATCAATTTTTCTAGTTTTTTATATTTAACTAAGTTGGGTTTTTCTTTTCTTCTCACAGTTTGCCTGGAAAAGCA CTAGAAACTGGTGAAACAGTGTGGCTATGCAATGCTCAGCAGGCAGATAGTAAATTTTTCTCTCGTTCTTTGCTAGCAAA GGTTGGATTTTATTCATAAATTTGATATTTTGGTTTTCATATTATATGATGTACGGACAATGTAAGGTTGATGATATAAT ATGTGGTCCAACCTTGGATTTGGCTCAGTGGGGTAAACATCAATGGGTTTTATGATGCTCAATTTCGTCCTGTAAGCATT GAGCAAGTTGGTCTCTAGAAGAAATAAATATCTTTCGCAGTCTTTGATTGTATCAAATGTTGGTCAAAAAGTTCTTACGA CTAGATAAAATGTAAGCTAACTTGACCAACATTTAGCACAATTAGGTACCATGAGGATTTGTCTATCTTTTAGAGACTAA CTTGCCCAACGTTTACACAACGTTTACACTTTCAGGAATGAAATTGACCATTAACTCAATTTTTAAAATTTACTAGATTT TAATTTTTCATATAGTAATTTACTATCCATAATTTTTGGTTTTTAATTCATTCACACTTCACTTTATCTTCTATTTCATT TGCGTATACTTTTTGTTTCTGTCTCTCATATTTTCTTATCGCACCACTTATCATATCATTATTTTTTTTTTTCATACGGT ATGACTGACTTCAATCCTTTTCAACAATTTTCTTTTCTTTTTCATGTGGACATGGGTTTCAATTGCTGTATCCAGAGTGC CTCTATTCAGGTATGACATTCTCTCTACAACCTTTTCTATCTAAGGTTAAAAATGGTATTTTGTTAGTCGGCATTTGGTT AAAATAACTTAATTAAGTGCTTATGAGCTTAAAATATAATTGAAGTGCTTATGATGACGAGCGATTATGACAACAAGTTA CATATATTTTGACAAACCTATGGAAATATGCTAAAATTATTTGAAAAACTTATTGAAATATGCTCAAAATGTATTGCAAG TAAACCCTTATTCATAAGCTAATTTAAATTTCTTATGAAAATAAGTTTAAAATAACTTGTAGATAGGCCAAAAGCTATTT AAATATTTTCTTTCAACTACTTGTATAAGTGTTTGTGCTATTCCACAGAAACTAACTTGAAGTTGGTGGTAAATATTGGG GTTATTTGGGATTGTGATTATGTCTTAACTAAAAAGGTGAAACAAAAGTAAAATGCAAAAGTGAGCTATCTTCAAGGCAA GGGCTGAGTATAGATATTGTGATTTGTACCCTATCCCATATTCTAACTTTACCTTATGACAGAAGCATAGATATTAACAT TCATACTGTGTGGTGTGTGCTAAAACCTGTTTTTCAGACAGTGGTGTGTTTTCCCTATCTTGGAGGTGTCATTGAGATAG GAACAACTGAACTGGTAATTTCTGTGTTCTTCTTCCATAAGCTAGTTCCTATATGTTTTCAATATTAGTTAATACTTCTT AATTTGCTTATCTTGTTTGTAGGTATCTGAGGATCCTAATCTCATTCAACATGTGAAGGCATGCTTCTTAGAAATCTCAA AGCCTACATGTTCTGATAAATCATCCTCTGCCCATGACAAACCACATGATGACAACAAATATCCAACATGCACCAAGGGT GACCATGAGGTTTTAGACAAAATTCCCATGGAGAACTCATGTTCCTTTGCAGAAGAACTCAAATTTGATGAATATCCTGG CAGGGAGTTACAAGATGATGATAACAATGAAGATTGTGACATGGATGGATTCTCTGATGGTGGTTGTGATCATTATGAAT CCATGATAGAGGGCATCAACGAGGGTGGTTCTTCTCAAGTTCATTTTGTGAATGAAGGTGGTGACATCAATGGTGCCCCA GATTCCTCTAGTTCTTGTGATTGTAGGTCTGAGGCTTCTGAGAACCATGGTAAGAAGGATTCTAAAAATGTAATCCAAAT TCAACAAAAGGAGCTTCAAGACTGTGATGATAACTCAAAAAGTAGCTCTTTGGATATTGGAGCTGATGAAGTTTTGTACT ACACAAGAACTCTCTGTGCTGTTCTGGGAAATTCATCAAGTTTTGCACAAAATCTATGTGCAAGTAAATCTAGTTTTGTG AAATGGAATAAAGGAGGAGTTTCTGAAAGGAAGTGGCCGCGGTTGCAACAAATGATGTTAAAGAAGACTTTGTTTGATGT CCCTTTTATGCACCTAAGTTGCTCCTCTCTCAAATTACAAAAAGAAAATGGAAGAAAAGAATGGACTTCTAAATTGGAAA ATGCTGATAATTTCATGGGGAATGTCTTCTCTGATAAGAAAAGAGAATCTAGAAACATTCAGGTACTCAAATCTGTGGCT CCTTCTGCATGTGAGGTATTGACTTATCATCTGCTGAAATTAATGTTATCACTCGATGAGTGATGTGGCTGGAAATTGCA TGCTACAATGCTAATGGCCTAATTAATCTTAAATCTTTAGTTATTTCGTATAGGTCCAAGTATAAATTTTTTACACTCAT CACATGAAGTTATTTAGCAATAGTGTCCTGTTCTGTTCTGAAATTTTATTTATTTAGGAATATCAAAGTTCAATCTCAAA AAGCAGTGAAACATGTTAAGGAACCAGTTGTTATGTTTGTAAATTTGACAGATTTAGACTCTTTTTAGCAATTTCTAAAT GATGTCATATGTAGTAAGAAGTTAACAAAACCCTTGAAGTTACTTTGTAAATATTGAAATATATTCATGTTAATTGCTAA CTATGTGAAGGTGGAGAAGATTTCAGTTCTTGGTGACACAATTCAATACTTGAAAAAGCTTGAGGCAAGAGTGGAAGAAC TAGAATCTTACATGGACACTACAGCTACTGGAGCAAGAACCAGAAGAAAATGCCCAGATGTGCAAGAGCAGATATCAGAT AACTATGGCCCCAGTAATATTTACATGGGAATGAAAAAATCTAGGATAAACAAGAGGAAGGCTTGTGATATTGATGACAT AGACACAGGGCTAGACATGATTGTTTCTGAAGAAGATAAGCCATTGGATGTGAAAGTCAACATGAAGGAGGAAGAGGTTC TGATTGAGATGAAATGTCCTTACAGGGAATACATATTGTATGATATCATGGATGCCATAAGCAATCTGCATATAGATGCA CACACAGTTGATTCATCAACAGCTGATGGTGTTCTCACATTTAAACTTAAATCCAAGGTTTGTCCTTCTAACTTTTTACT AATTTTAGGGTAAGTGTAAGCTACATTTCTATGATACAAAAAACAAAAGCCTTATCCCAGAAAGTGAGGTCTGCTATCTG AATCACCCGACACCACTGCGCCTGAGAAAAAACCAAATTTTATGGAATATTATTGACATGTGATCACTTTTAATAATGTA TTCCAACGTTGTTTTTGGCTTCCCTCTACCCCATTTCCCAGGACTTGAAGAAACCATGTAATCAACCCTTGTCTCGATGC CTCCAAAAGTCTTCTTTGTAAGCTACATGCCTATAACTGCTAAAAGAATTCTTCCAAAAAGTAGCATGTTTAAGACCTTG TTCCAAGTTATCTCAGTCAACCTGTTTTGAGGGGGCATTCTAACCATTTGTTACTTAACCCTAGCTTGAAGGGAAGAGAA GAGCATGTTACTCATGGACTAAGACATTATCAAAAAAGATTTTGACCATTGAAAGTCATTTATTTAATGAGTAATTTGAA AAATTATACTTGGAAGTTAGTTTTCTTTTCTTTAATACTTGAAAAGAAATTTGAATTCTTAAAACTTCATTTCAGTTTCG AGGAGCAGCAACTGCGCCAGTGCGGATGATCAAAGAAGCACTCTGGAAAGTATCTGGAAAGATTTGAAATGCCTGATTGA GTGTCTCATGGAAGTAGTAGATTCTTCTAATTCAACAATTTCATCTTTGTAACTCTAGAACAGTGATTACCTTCCTAACA AGCATGTCTTATTGTGTGAATCTTGATTTTGGCTATTTTGCTTAACTTCCTAACTGGGATTCTGCAGTTTAATTACTATC AGGTTTGAATTACTTCAGTCCATCTTTTATCATGAATTTGTGTGATTTCTGTTTGCTGTTGCTGCCAGCATCATATAACT GACTGTTTCCTTGTTTAGAAAGTGGAATTTGAATGTATGGTTCCAATGTGGTGGTGCCTGAAAACCTTTTCAGGTGATGT TCCAAGGAGCAAACATAAAGTTTATATTTCTAGTTTGAAACCTGTGAAATGTATCTATCAGAGAAACATCTATCTGAAGA GATTTTATCCATAGTTTGTTGGATCTATTTAGTGTGGATTTGCTATTGCTGTGAATTGTTTTAGTGTATGCTTGGAAATT CTTCTACAATCAATTCTAATGCTCATATCAATTTTAGTCAGAAGTTTTTATGAGTAGCTTCTAAATGCCAGAGTTGATTC TGAGGAAAACTAAACTAATCCAATGCTATTGTAATTCTTTACAATGGCACCAATT
CDS sequence (LotjaGi3g1v0383100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATTGGGAGCCCAAAGCATGAGAAGAAGATGCAGGAAAAGAACCTGAGTGCACAACTAGCTGTTGCAGTCAGAAG TATTCAATGGAGCTATGGAATTTTCTGGGCACCTTCAACCACTCAACAAAGAGAACTGGAATGGAGGGATGGGTACTACA ATGGAGACATTAAGACAATGAAGACAGTGCAAACCATGGAAACTAAGGCTGATAAAATAGGCCTGCAGAGGAGTGAACAA CTGAGAGAACTATACAAGTTTCTTCTTGTAGGTGAAGCTGACCCACTAGCTAAAAGACCTTCTGCTTCATTATCTCCAGA GGATCTCTCAGATTCAGAGTGGTATTACTTGGTTTGCATGTCCTTTGTGTTCTACCCCAACCAAAGTTTGCCTGGAAAAG CACTAGAAACTGGTGAAACAGTGTGGCTATGCAATGCTCAGCAGGCAGATAGTAAATTTTTCTCTCGTTCTTTGCTAGCA AAGAGTGCCTCTATTCAGACAGTGGTGTGTTTTCCCTATCTTGGAGGTGTCATTGAGATAGGAACAACTGAACTGGTATC TGAGGATCCTAATCTCATTCAACATGTGAAGGCATGCTTCTTAGAAATCTCAAAGCCTACATGTTCTGATAAATCATCCT CTGCCCATGACAAACCACATGATGACAACAAATATCCAACATGCACCAAGGGTGACCATGAGGTTTTAGACAAAATTCCC ATGGAGAACTCATGTTCCTTTGCAGAAGAACTCAAATTTGATGAATATCCTGGCAGGGAGTTACAAGATGATGATAACAA TGAAGATTGTGACATGGATGGATTCTCTGATGGTGGTTGTGATCATTATGAATCCATGATAGAGGGCATCAACGAGGGTG GTTCTTCTCAAGTTCATTTTGTGAATGAAGGTGGTGACATCAATGGTGCCCCAGATTCCTCTAGTTCTTGTGATTGTAGG TCTGAGGCTTCTGAGAACCATGGTAAGAAGGATTCTAAAAATGTAATCCAAATTCAACAAAAGGAGCTTCAAGACTGTGA TGATAACTCAAAAAGTAGCTCTTTGGATATTGGAGCTGATGAAGTTTTGTACTACACAAGAACTCTCTGTGCTGTTCTGG GAAATTCATCAAGTTTTGCACAAAATCTATGTGCAAGTAAATCTAGTTTTGTGAAATGGAATAAAGGAGGAGTTTCTGAA AGGAAGTGGCCGCGGTTGCAACAAATGATGTTAAAGAAGACTTTGTTTGATGTCCCTTTTATGCACCTAAGTTGCTCCTC TCTCAAATTACAAAAAGAAAATGGAAGAAAAGAATGGACTTCTAAATTGGAAAATGCTGATAATTTCATGGGGAATGTCT TCTCTGATAAGAAAAGAGAATCTAGAAACATTCAGGTGGAGAAGATTTCAGTTCTTGGTGACACAATTCAATACTTGAAA AAGCTTGAGGCAAGAGTGGAAGAACTAGAATCTTACATGGACACTACAGCTACTGGAGCAAGAACCAGAAGAAAATGCCC AGATGTGCAAGAGCAGATATCAGATAACTATGGCCCCAGTAATATTTACATGGGAATGAAAAAATCTAGGATAAACAAGA GGAAGGCTTGTGATATTGATGACATAGACACAGGGCTAGACATGATTGTTTCTGAAGAAGATAAGCCATTGGATGTGAAA GTCAACATGAAGGAGGAAGAGGTTCTGATTGAGATGAAATGTCCTTACAGGGAATACATATTGTATGATATCATGGATGC CATAAGCAATCTGCATATAGATGCACACACAGTTGATTCATCAACAGCTGATGGTGTTCTCACATTTAAACTTAAATCCA AGTTTCGAGGAGCAGCAACTGCGCCAGTGCGGATGATCAAAGAAGCACTCTGGAAAGTATCTGGAAAGATTTGA
Protein sequence (LotjaGi3g1v0383100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIGSPKHEKKMQEKNLSAQLAVAVRSIQWSYGIFWAPSTTQQRELEWRDGYYNGDIKTMKTVQTMETKADKIGLQRSEQ LRELYKFLLVGEADPLAKRPSASLSPEDLSDSEWYYLVCMSFVFYPNQSLPGKALETGETVWLCNAQQADSKFFSRSLLA KSASIQTVVCFPYLGGVIEIGTTELVSEDPNLIQHVKACFLEISKPTCSDKSSSAHDKPHDDNKYPTCTKGDHEVLDKIP MENSCSFAEELKFDEYPGRELQDDDNNEDCDMDGFSDGGCDHYESMIEGINEGGSSQVHFVNEGGDINGAPDSSSSCDCR SEASENHGKKDSKNVIQIQQKELQDCDDNSKSSSLDIGADEVLYYTRTLCAVLGNSSSFAQNLCASKSSFVKWNKGGVSE RKWPRLQQMMLKKTLFDVPFMHLSCSSLKLQKENGRKEWTSKLENADNFMGNVFSDKKRESRNIQVEKISVLGDTIQYLK KLEARVEELESYMDTTATGARTRRKCPDVQEQISDNYGPSNIYMGMKKSRINKRKACDIDDIDTGLDMIVSEEDKPLDVK VNMKEEEVLIEMKCPYREYILYDIMDAISNLHIDAHTVDSSTADGVLTFKLKSKFRGAATAPVRMIKEALWKVSGKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 636 | 629 | 1.5E-253 | – | |
| PANTHER | 8 | 636 | 629 | 1.5E-253 | – | |
| Pfam | 17 | 200 | 184 | 8.9E-51 | ||
| MobiDBLite | 295 | 321 | 27 | - | – | |
| MobiDBLite | 295 | 334 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0383100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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