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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0386400 |
| Transcript ID | LotjaGi3g1v0386400.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A1J7HNM0|A0A1J7HNM0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0386400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78219010..78222535) extracted from Lotus japonicus Gifu genome v1.2.
TTACATTTTTCAGGTGATTAGATTGGTTTATGCTCTCCTTTTGGTGATTCTGCTGAGTTCAGATGTAGCTGAGAGCAGAA AATCCAAAACAGTCACCACATCATTTGTGTACAGTGCTATAAACTGCAGAGCACATAGTGCTTCATTGACAGATTTTGGT GGTATTGGGGATGGAAAGACATCTAATACAAAGGCCTTTCAATCTGCAATCAGTCACCTGAGTCAGTATGCTTCTAAAGG AGGGGCTCAGTTGTATGTTCCTGCTGGGAAATGGCTTACTGGGAGCTTCAGTCTTACCAGCCACTTCACACTTTACCTCA ACAAAGATGCTGTTCTCCTTGCTTCTCAGGTATCTCATTTTTGTTCCATGTTTGATGAATAAGTAATATCAGAATAAGAT TCAATACCTGGTTAAAATCCATTATATTTGTTTTGTTAATTCAGAATTGAGATTGATGATTAAACCTTGTCTGAAAATCC TTACAATCGATTCTAAAGCCAAAATTTATTCTGTGGAGAAATCTTTTTTGAGTTGTTTCTAGCTGCTAGAACTGATTGAG TAAAGAGAAGTTGATCCAAACATGCTATAAGCAACCACAAATGTCAGCTCACTTGTTTTATGTCCTCACGCAGAATCTAT TTTTTTCCTTACATATCTTCCCATCCTTACATAGTTACATGTTTTGCATTTTATGAACTATAAACTTAAAATCTTCCACA ATTTTCTTCACTCCTTGTATAACTATCTACCCTTTAATTTCAAAAGTTACGTTATTGCTCATCCATAGCCTTTGAAGAAA GTGGAAAAAAGTTATCTTAATGATTGTAGTGTTTGAACTAATGTTGTTCCACCTAGTTGGCCTTATCTGGCTTTTCTGGC ATCTTTCCTCTTGGCAGCATTTGGCTAGATCTACAAACAAAACAAGCAATAAATTAAGTTAGGAAGTGATGTTCCAAGCT TTCATTAGTTGCATGGTAGAAAACATAAAATGGGTATTTTGGACTTTCTTGACGAAAAATTGATGACATTTTCTTTGTTA AGTACTCTATCCACAATTGCTTAAGAATGCCATTACAAGCTGAAATAGAAGCTAAGTACTATCGCTACCACAGACTCATG GCTCATTTATGAAAGTGGAAATATAAGTTTTTAAAGAGATTAACTTGAGTCACAAATGAGGTAACTTGTCCAATAAATGC AATACAAATTTGTCACAAGGTTCATCACTTCTTACTGCTACTAGTAAACTAGGTTATCAAAGCAATTTTGTTAAGTAACT CATGAAAGGAACTTAACATCTTCTGAACCTTTGAACCCCTAAAAACTGTTTATAGACACAGTAGATGACAAATTGGGTTC CATAGGAAAATGAACCTAGTTTTTTTTTTCTGCCAGTGCCATGGTGAGGTCCAATGCACTGTTTTCTTTTGCTTACAGTT TCAAGTTTGACACAATTTTCGCACTTTCATGTGTAACCTTACTAAGTACATGTTTCAAAACGTGTTTGAATAATAACACT GTGAAGTTAAAATCACAGTGGACACTGTACATAAGTAACTTCTCTTAAACTTTGCTTGTCTATAATGATTTTGACTTCAT TGTGATCTTTAAACGAATTTCCAAACTAATTAGAGTTTCTCTTTGAATTGGTTTAGAATATTAGTGAGTGGCCTGTGATT GAACCACTCCCATCCTACGGTAGAGGAAGAGACGCAGCAGCAGGAAGATATACTAGCCTCATATTTGGAACAAACCTCAC TGATGTTATTGTCACAGGTATGGAAAAGGAAAAAGTTGCACTTGTATGAAACAATTATCAAACAAGTAGTTAAGGGTTGG TGAAACAGTTTCACCTTTTCAGCAAACATGTGATACACATAGACAGTTTGAATTCCAATTCCCAAAATTTACTAACCTCA TTGAATATATTTTGTATCTAATCTTATGTTTGACTTAATTTTAATTTAATTTAACTTTATGATTAAATTCACATTGAATT CAAAAAAAAAATCACATTTTATGAAATTATGACCATGGTGATAACAGGGGATAATGGCACCATAGATGGTCAGGGAGCAT TTTGGTGGCAGAAATTTCACAAGAAAAAGTTGAAGTACACTCGCCCGTACCTGATTGAGTTGATGTTCTCAGACAGCATT CAGATCTCCAATCTAACGCTTCTGAATTCCCCATCATGGAATGTCCATCCTGTTTATAGCAGGTAAATCCTACCCTTTCA TGTTGTGATCAAGTTTTAATTTAAAAGCCTTCAAAATCACATTTGACCTTTGTGACACTATATTTTTAACGCTATGAAAT TCACCTCCAATGTCAAGGTTATAACAAATCTTCTAACGTTATGCAGCAATATTATAATTAAAGGCATAACCATTATCGCT CCTGTCACATCCCCTAACACTGATGGCATCAACCCAGGTCAGTATGTTAGAGAGAGTAAACTAAGTTATCACAGTTGTTA ATTAAATTATACTTATATACTTGCAAGTGTTTAATAAACTATTAGTATGTTTGGATCAATTTTTTCTTCATCGGAATGAA TTCTAAGACTCATAACATATTCACATAACTCTAGAATTGATTCCGACTTCAGAATCAATTGTAGAAAGATTTCTAAACAT GCATTATGTTGTGTCTTTTAAATTTCAACATTTTGTCTCTCAATTTACTACTATGATGATTTACTTTATCATGTAAAATG ACTCTTTTAGTCCTGAAGAGCTAAATCCATTACTTGTGTATATCTTGGTATTGAGTGGAGTACCATTTTTGTCTGTTTTT TCTCTGGCATTAGATTCTTGTACAAATACCAGAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTGGCAGTGAA GAGTGGGTGGGATGAATATGGCATAAAATTTGGATGGCCCACAAAACAACTAGTAATCAGAAGGCTGACATGCATTTCCC CATACAGTGCAACCATTGCCTTGGGAAGTGAGATGTCAGGTGGGATCCAAGATGTCAGAGCAGAGGACATCACAGCCATC CACACAGAATCAGGCATCAGAATCAAGACAGCAGTAGGAAGAGGAGGGTATGTGAAGGACATATATGTCCAGAGAATGAC CATGCACACAATGAAATGGGCATTTTGGATGACTGGGAACTATGGCTCCCATGCTGATAAGAACTATGATCCTAATGCCT TGCCTGAGATCAAAGGCATCAACTACAGAGACATGGTAGCAGATGAAGTGACCATGGCTGGAAACTTGGAAGGAATTTCT AATGACCAGTTTACTGGAATCTGCATTGCCAATGTGACAATTAGTATGGCAGCCAAGTCCAAGAAACAGCCTTGGACTTG CAGTGATGTTGAAGGGATCACAAGTGGGGTGACTCCTAAGCCATGCAATTTGTTGCCTGATCAGGGGCCTGAGAAAATCA CGACAACATGTGAATTTCCCACTGAGACTCTTCCCATTGATATGTTGGAACTTAAGAAATGTACTTCTAGCATTAAACTT CCATGA
CDS sequence (LotjaGi3g1v0386400.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCAGACAGCATTCAGATCTCCAATCTAACGCTTCTGAATTCCCCATCATGGAATGTCCATCCTGTTTATAGCAG CAATATTATAATTAAAGGCATAACCATTATCGCTCCTGTCACATCCCCTAACACTGATGGCATCAACCCAGATTCTTGTA CAAATACCAGAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTGGCAGTGAAGAGTGGGTGGGATGAATATGGC ATAAAATTTGGATGGCCCACAAAACAACTAGTAATCAGAAGGCTGACATGCATTTCCCCATACAGTGCAACCATTGCCTT GGGAAGTGAGATGTCAGGTGGGATCCAAGATGTCAGAGCAGAGGACATCACAGCCATCCACACAGAATCAGGCATCAGAA TCAAGACAGCAGTAGGAAGAGGAGGGTATGTGAAGGACATATATGTCCAGAGAATGACCATGCACACAATGAAATGGGCA TTTTGGATGACTGGGAACTATGGCTCCCATGCTGATAAGAACTATGATCCTAATGCCTTGCCTGAGATCAAAGGCATCAA CTACAGAGACATGGTAGCAGATGAAGTGACCATGGCTGGAAACTTGGAAGGAATTTCTAATGACCAGTTTACTGGAATCT GCATTGCCAATGTGACAATTAGTATGGCAGCCAAGTCCAAGAAACAGCCTTGGACTTGCAGTGATGTTGAAGGGATCACA AGTGGGGTGACTCCTAAGCCATGCAATTTGTTGCCTGATCAGGGGCCTGAGAAAATCACGACAACATGTGAATTTCCCAC TGAGACTCTTCCCATTGATATGTTGGAACTTAAGAAATGTACTTCTAGCATTAAACTTCCATGA
Protein sequence (LotjaGi3g1v0386400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSDSIQISNLTLLNSPSWNVHPVYSSNIIIKGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYG IKFGWPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDITAIHTESGIRIKTAVGRGGYVKDIYVQRMTMHTMKWA FWMTGNYGSHADKNYDPNALPEIKGINYRDMVADEVTMAGNLEGISNDQFTGICIANVTISMAAKSKKQPWTCSDVEGIT SGVTPKPCNLLPDQGPEKITTTCEFPTETLPIDMLELKKCTSSIKLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 3.3E-187 | – | |
| PANTHER | 1 | 282 | 282 | 3.3E-187 | – | |
| Gene3D | 1 | 244 | 244 | 2.1E-66 | ||
| Pfam | 3 | 237 | 235 | 3.1E-27 | ||
| SUPERFAMILY | 3 | 284 | 282 | 2.14E-64 | ||
| SMART | 26 | 52 | 27 | 450.0 | ||
| SMART | 53 | 74 | 22 | 27.0 | ||
| SMART | 115 | 136 | 22 | 3400.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0386400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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