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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0387900 |
| Transcript ID | LotjaGi3g1v0387900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT4G01250.1 WRKY family transcription factor; Swiss-Prot: sp|O04609|WRK22_ARATH WRKY transcription factor 22; TrEMBL-Plants: tr|I1MKR8|I1MKR8_SOYBN WRKY transcription factor; Found in the gene: LotjaGi3g1v0387900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78494292..78496501) extracted from Lotus japonicus Gifu genome v1.2.
CTACCTCTTGCACCTTATCACCTCTCTCTCTCTCTATCTCTTCGAAAAAAGTCAGCGCCATCTTTTGTCCCTTTCTCTCT CACAAGAGCCAGAGCCAGAACAGGGTACACAACACAGACATTTTCAGACCCTGTCTCTTCGCTTATGGACGACGATTGGG ATCTCCACGCCGTCGTCAGAGGCTGCACCACCGTCACCTCTTCCTCCTCCTCCTTCTCCGCCGCCGCCACCGCCTCCTCT GTTTCTTCCCCTGCTATTGGGAGTTCTTACCAATCTTCACCTCCCTCCACCTTCTTCCCAGCAAGCCAAGTTTTGTCCCT TTCAAACCCCTTTGAATCAAAGGGTTCCATTGGTGGACTTCATGAGCTATGCAAGCCTTTCTTCATCAAATCACAGGCTC CTCCTTTCTCTTATTCACCCAAATCGCCTCCTCAGATGAAGCAAAAACAACAGCAACCGCAGCAGCATCACCTTGCTGGT TCTGGTTCTGGTTCTGCCACCACCCCACGATCTAAAAGAAGGTAAATTGATTTTTGTTGTTTTGTTTTTGTTTTTCATTC CACTGTTGAAGGGGGATCAGAATCAGATACCCCAAATCAAAATGATCTTGAATTTAGGCTAGTTAACTCTTTCTTTTGAT TCACTAGGCTAGTTAACTCTGAAAAGCTAAAACCCATGTCATTGATTCATGATGTGAGTATGAAAAATGCTTGGTTTCTC TGTTTCAGGAAGAATCAGTTTAAGAAGGTTTGTCAAGTTTCAGCTGAGAATCTCTCTTCAGACATATGGGCATGGAGGAA ATATGGTCAGAAACCTATCAAAGGGTCACCATATCCAAGGTTAGCCCTTTCAATATTTCAATTTTCTTATCAAAGGGGGG AAAATGGGGTGAAGTTAGTTTTGATTGTGAAATATGGGCTTAATCAATCTCTGTTTGCTTGTGATTAACAGGGGATATTA CAGATGTAGCAGCTCAAAAGGGTGTTTAGCTAGGAAACAAGTGGAGAGGAACAAATCAGAACCAGCAATGTTCATTGTCA CCTACACAGGGGAACACAACCACCCTGCCCCCACTCATCGGAATTCCCTTGCTGGCTCCACCCGCCAGAAGCCATTGACA CCTGAAACCGCCACTGCAGGGGACTCTGGCGGCAAAGCACTGACAAATCCCGTTTCTCCAGAGACCCCAGGGGCGGAAGA AGATGGGGTTGCACCCCTATCAGAGAGCAAAGAGGATTTGGAGGATTTGATGAATGATGATGATGGAGAAGAACATGAAT TTGGGGTGTCAGATATGTTGGTAACAGATGATTTCTTTGAGGGTTTAGATGAACTGACAGGGTCTGCAGTTGTAGGTACT ACTGAAGACTGTTCTGGTGACCCATTTGTAGGTGGTGGTGGTGGTATTACTCTTCCTTCTTGGGTGGCCAGTAATGCTGC CACTGCTGCTGGTGGTAGCTGACTCATTGGTTTCATGCTTTTTTTGTTACAGAGAACAGGAGCTTTTTGTTTTTTGTCTC TTTTTGTAGAGGAGCTGGTATATTTTGGAGGAATCTTAACCAACAGTGCTTTGTGATTGTGAAGGGGAAGAAAAGTTCTT CCCAAAGTATAGTGTGATGATGTAGAGACTAGAGATTAGGCATTTATATCTTTGTTACTCCTAGTGATTGTTAGCTCTAG CTCTGCTAATGTAGAAACAATTCATTTCTAGAGTGTTAAAGCATGTTTGGATTAATTTGTCTTTCCTCTCAATCAATTTT ACAATCCAGAAGATAATCGCACACACGTTTCTTCCATGAATTGATTATAACTCTTGTTCACGGAGTGAATTCTGAGGAAG TTTGAATCAAGATTCAAACCATAGTCCCCGAAAATACAAAAGTAAACATGTCTAAACTTGCCTTTCAGCCTTTTATACAT TCGAAATCCAATCAATGTGTATCATAAATTGAGATATTAGGCTTTCCTTAACTCTTTCCTTGTATCATCAATAATGTTTT ATTCATCAATCAATTCCACTCCATCTTGGGAGCTAGTGAAGAAATGAGAAAGAAATAAGTGATATGATATGTGATGTAAC AGTGTAGTGTCTGACATAAAATGCAAAAAGATAGAAAGAAAAAGGCTAAAAAGCACTTTTGGCCCCTGATGTTTCACGTT TGTGCAAATTCTGCCCCTACTATATTTTTGTCGATGTTTCTACCCCTCAT
CDS sequence (LotjaGi3g1v0387900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGACGATTGGGATCTCCACGCCGTCGTCAGAGGCTGCACCACCGTCACCTCTTCCTCCTCCTCCTTCTCCGCCGC CGCCACCGCCTCCTCTGTTTCTTCCCCTGCTATTGGGAGTTCTTACCAATCTTCACCTCCCTCCACCTTCTTCCCAGCAA GCCAAGTTTTGTCCCTTTCAAACCCCTTTGAATCAAAGGGTTCCATTGGTGGACTTCATGAGCTATGCAAGCCTTTCTTC ATCAAATCACAGGCTCCTCCTTTCTCTTATTCACCCAAATCGCCTCCTCAGATGAAGCAAAAACAACAGCAACCGCAGCA GCATCACCTTGCTGGTTCTGGTTCTGGTTCTGCCACCACCCCACGATCTAAAAGAAGGAAGAATCAGTTTAAGAAGGTTT GTCAAGTTTCAGCTGAGAATCTCTCTTCAGACATATGGGCATGGAGGAAATATGGTCAGAAACCTATCAAAGGGTCACCA TATCCAAGGGGATATTACAGATGTAGCAGCTCAAAAGGGTGTTTAGCTAGGAAACAAGTGGAGAGGAACAAATCAGAACC AGCAATGTTCATTGTCACCTACACAGGGGAACACAACCACCCTGCCCCCACTCATCGGAATTCCCTTGCTGGCTCCACCC GCCAGAAGCCATTGACACCTGAAACCGCCACTGCAGGGGACTCTGGCGGCAAAGCACTGACAAATCCCGTTTCTCCAGAG ACCCCAGGGGCGGAAGAAGATGGGGTTGCACCCCTATCAGAGAGCAAAGAGGATTTGGAGGATTTGATGAATGATGATGA TGGAGAAGAACATGAATTTGGGGTGTCAGATATGTTGGTAACAGATGATTTCTTTGAGGGTTTAGATGAACTGACAGGGT CTGCAGTTGTAGGTACTACTGAAGACTGTTCTGGTGACCCATTTGTAGGTGGTGGTGGTGGTATTACTCTTCCTTCTTGG GTGGCCAGTAATGCTGCCACTGCTGCTGGTGGTAGCTGA
Protein sequence (LotjaGi3g1v0387900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDDWDLHAVVRGCTTVTSSSSSFSAAATASSVSSPAIGSSYQSSPPSTFFPASQVLSLSNPFESKGSIGGLHELCKPFF IKSQAPPFSYSPKSPPQMKQKQQQPQQHHLAGSGSGSATTPRSKRRKNQFKKVCQVSAENLSSDIWAWRKYGQKPIKGSP YPRGYYRCSSSKGCLARKQVERNKSEPAMFIVTYTGEHNHPAPTHRNSLAGSTRQKPLTPETATAGDSGGKALTNPVSPE TPGAEEDGVAPLSESKEDLEDLMNDDDGEEHEFGVSDMLVTDDFFEGLDELTGSAVVGTTEDCSGDPFVGGGGGITLPSW VASNAATAAGGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 304 | 304 | 1.8E-105 | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 304 | 304 | 1.8E-105 | – | |
| MobiDBLite | 89 | 130 | 42 | - | – | |
| MobiDBLite | 94 | 123 | 30 | - | – | |
| Gene3D | 126 | 204 | 79 | 5.6E-29 | ||
| SUPERFAMILY | 137 | 203 | 67 | 2.22E-26 | ||
| ProSiteProfiles | 137 | 203 | 67 | 34.899 | ||
| SMART | 142 | 202 | 61 | 3.2E-37 | ||
| Pfam | 144 | 201 | 58 | 5.5E-26 | ||
| MobiDBLite | 197 | 270 | 74 | - | – | |
| MobiDBLite | 200 | 235 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0387900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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