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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0388000 |
| Transcript ID | LotjaGi3g1v0388000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 39S ribosomal protein L46, mitochondrial; TAIR: AT1G14620.1 decoy; Swiss-Prot: sp|Q5RBU2|RM46_PONAB 39S ribosomal protein L46, mitochondrial; TrEMBL-Plants: tr|A0A072TZ19|A0A072TZ19_MEDTR 39S ribosomal protein L46; Found in the gene: LotjaGi3g1v0388000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78499029..78503418) extracted from Lotus japonicus Gifu genome v1.2.
CGATGACCCACCCACCTCTCTCACTTCCTCACCCATCACACACACACACACACGCGTTTGGCCTGAAGCCCTGAACCCAC TTTCTCCTCCTTCCTTCGTCCGTTCGCCGGCCGCCGCCGCCAGCCATTACGTCACGAGTCACGCCGCCGTTGTGCCCCTG GTTCGATCGCAGCGCAGCCTCTCTCTCAGGTACGAGTTCTTCCAATAGTTATTTTCCATTGTCCTTGTTTAAATTAACTA TCCAATTCAATGATTCATTACAACGTTAAATGCTTGTGGATTGTGGAAGAAAGCAAATTAAGCTAGGGTGAAGATGTGAG TACTTAGCATTGTTATCATGTTTGATTGGTTCAGGATGAAGATGTCATTGCTTCGGCCTCTCGTGACGAGGCGAGGATTC AGCACAAGCTCTGAGAAATTGGTCGCTTCTGTGCTCTTTGAGAGATTGCCCGTCGTCATTCCCAAAATTGACCCTGTTGT TTATGCATTTCAAGAATTCTCGTAAGTCTAAGATGAGGGCAGGGGAATAAGTCTAAGATTTCACTCACTGGTTATTCTGT GGTTTGCTCAGTTAACTTTTAGAACCTGGTTTAGCAAAGATTTTTGTTATTTTCATCTGCTCTGTTTACTGTTCCATTCT CTTACTGATTTTGTGGTTCTTGTTATTACACTAACTATGTTTTTCCCGGGTTTTGGATGGTTAGGTTTCGATGGCGACAG CAATATCAACGTAGATATCCTGATGAGTTTCTCGACAAGTCTGATGCAAGGTATAGGGGCTAAATAGCAGGTCTATACTC TATAGTTAAAAACTTTGGTTGCTTAAAATTAATTAATTGATTTAAAGAGAGAGATCATGAGAGGCTTATGTAATAGTTTA TAGAAAGAGTATATTTATAAGCTTCAAGAGAGTTGAAAAGATGAAAAATTAAAATTAGAAATGAAAATAAAGGAAAAGAA AGGATAGTGATTAGTGAAAAGAGTTTTTTAATGGTTTTTAACAAAACAATTCATAATGGTATCTATGAACTTTTACTCTT TCTATCCTCAAAAATTGATTCTAAGGCTTAGCAATATAAACCACTGTGTACAATCACTGAGTTGGAATGATGACAAATTT ATAAGTATGAAGAAAAAATTATTTGCTTTTGAGAAAACCCAATTTCTGTGTGGCATGAGATTCGATCGTCAGACTTTCAT AAAAGGGTTGCAGACCATTAAGTGACAATGTAAGAAAGCACAGCATTTGATGTCAAATGTTCAAAGACACTTGATAATAA CTAATAAGAACTGTTTGATGAGTGACATATACACATATTATAATAGTATTGAAATTGCAGTTTGTCATTTCTGATCGGGT AGCCATAGTCATACCATAAACCATTAGTTACATGAAAACAGATATAGTTACTACAATACAGTCCTAGATATAGAATACAA GAGGGAGGGTTCACTCTGGCTGGCGTTTAATCCAAAGCTGATTAGAATGGAACCTAACCTCTAAAATCAGGCAGTTCGGG CTTGTTTGGGGCCATAAATAGCCTTGTTTGATTTGCATACCAGGTTTTATCATCAGTCTCAAATGGATTTTTTGTTTCCT TTGGTAAAAAATGGTCTGAGTGTGTTTTGGGAAGCGCAAAACTTCAGTTGCCGCTGATAACATTCTTATTCGAGTATCCT ACAAAAAATTAACCCTTAAAATAAATGATACCATTTAAAAGTACGCGTCTCTACATTGACTTTTTTTGCTAGATTCTATT CATTGGCAGTGATTATGATACAAATATATATGTCTTTATCATTTCCTTTACCAATATCTGTACATCCATCTGTTTAATGG GTGTCACTACTGTCAAAGTACAGATGGATCCTTCTTTTCATTTACTGACGTGAACATTATGTTACGTCCAGGGGAAAAGG AGATTATCAGATTGACTATGTGCCTGCACCTCGAGTCACTGAAGCTGACAAAACCAATGATCGAAAGTACGTAGACTGTT ACCTTATATAATTTACAGTAATAAAATGCTTCATTTGAATGTATGAAGGAAAATGAATGCTATATAAGAGATTCCATCAT GTCATATACTTATGATTTCTCCAATGAAATATTTACTTGGGTCTTCACCTGTTGCTTTAACTTTTGGGATAGTTAGTTCA TACATGGTATTAGAGTCTCTATAATCAATGGGTCTATCATCCTTGCTTCCCCCCATTCTTCTAGTAAAAAAATGAATTTT GTACTAAGTAGGTGGACTTTTGTAATGTCCACACTTCATTCATGTGTCTTTACCTAACCTCACAACTCAAGCTTCTGTGA TAGTTAGTTAATGGCAACTGAAATCTCTTGTCCCCGTCCTCCTTGGGAGTTGTCAACCGTCCATTTTCCTTGGTGGGATG TTTAGTAAAGGTAGTCATAATCAAGGGTTATTGAGTTTGTTTTTTATTTCCTTACCTGCTTTATTTGTGACTGAATGAGT TTAGTTTAGACAAATCGGCGATATTATAATGTTGATGCACGCTTGCCTATGGATATTTAAGTTGGATTCTGAATGCACCT TCAGTCTTTAAGAAAGCCTTCTTAGTAATGTTATATAGCCGCTGATAGTTCTAACTGAGAAATACACTTGTTTGAGGGCA GGGTAGGTCAATCTTCATCCTATATCTTAGGTAACAGATTCGAAACTACTATATTTTGAATGCTCTTTGGAGACAAGCTT ATTTTGGGATTTGTGTTATCCCTTTTAATTTGTTAAGAACAGAATTTGTCTTCAAATATAATTTCTGGGCGTTATTCACT TACTGCTTGCCACTTTAGGTCATTAAATAGAGCTCTTGACAGAAGACTCTACCTTCTTCTCTTTGGTAATGGATATGGGG CTCCAAGCGGAAAGCCTGTATGGCATTTTCCAGAGAAAGTTTATGAATCTGAGGACACTATGCGTAAGGTGAAAATACTT ATGCGACTTTCTCCTCTTATTTCCTTATGTTCTTTTGCCTCTGAATTTTTTTGGAAATTTTGCAGTGTGCAGAGTCTGCG TTAAAATCAGTCTTAGGAGATCTTTCTAACACATATTTTGTTGGAAATGCTCCAATGGCCCATATGGTTGTTCAGCCTAA AGAAGACCTTTCAGGCTCCACATCTTTTAAGGTATATTTATAGGAAATTTGTGGTACTTCTGATCTACTATTGAAAGGTT AATATCTTTCAATATGTTCATTTGTATGAGTATGTGTTGGCAATTGCTGAAGTGACTTCCTAGGCCTTTGCCCCTTTTTC TTTGTTGTACCTCTTGATTCCAGAACTAGCATTTTCAATACTTCTGCCTTACTTCTTGACGTGGAAATTGATTATATTTG CTCATTCTTTGCTGAATCTTCTGGCAGAATTTCTTCTTCAAGTCACAAGTAATTGCTAAAAACCAGTTTGACATCGGAAA ATGTGAGGATTTTGTTTGGGTGACTAAGGATGAGTTGTTGGAGTATTTTCCTGAGCAAGCTGAGTTTTTTAACAAGATGA TCATTAGCTGATAGCAGTGGAGGACAGTTGTTTGATTCAAGTTATTGCAACTTAGTTCTTTTAGTATCTGTGGAGATGAC CTTGAAAGAAGATCAACAACATGACAGTTTTTTTGGCTCAACAAAAAGGTTTGGATTCAAAGTTAAATAGGGCATCTCAA ATTTTGGAGACTTGTGTAATGATTCAATGGATGCTTGAAGCATGTTGTTCAAAATCTTATTATTTCTACTTGTCATCCCT ATTTTCGCGTTAGTTGTACTGTAATAAAATTAATTGCCAACTTGCCATTGTGACCTTGAGACTTGAGAACAGGCCAATAT TGTAGTTGTAGATAGTCTCAGGATATCTTTGTTCACCAACTAGTCTTGTTTTGGAGTCCAAAATAACACTTTTCTTATGT CGATCAAATATATAAAAAATCATGTCCATCAATCGTTTACTATTGGTCAAAGCTATTGGTTGGTGAGCTGAATATTATTT CAACATGTGAAGAACTCAACAGAATGAATGTGTTCCAAAACAGAGGATGTTTTGTTGTGGACACTGATAACAGGGAGATT ATTGAAGATTAGTAGCATAGAGATCGAGTACTCTATTTATACCCACAAAAACAAAACTCTCTATAATTTGTGTTCACTTA CTGATCAGTTCCCTATCTTGTACGCGATGCAAATCCCAACTAAATTTCACCAACTTCTGTTCAACTGCATGCTCTCTTTA AGTACATGTGTGTTTAGATCAGCGTTAGCATAATTGAGACTGAGTAGAATTGAGTTCGGTAAACTTGAATTAAAACAACA TGATGTTTGGATCCATGTACTTAAAATGTGATTTCTTCAATAAAATTTTGTTTGGACAGTTTTAATTAGA
CDS sequence (LotjaGi3g1v0388000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGTCATTGCTTCGGCCTCTCGTGACGAGGCGAGGATTCAGCACAAGCTCTGAGAAATTGGTCGCTTCTGTGCT CTTTGAGAGATTGCCCGTCGTCATTCCCAAAATTGACCCTGTTGTTTATGCATTTCAAGAATTCTCGTTTCGATGGCGAC AGCAATATCAACGTAGATATCCTGATGAGTTTCTCGACAAGTCTGATGCAAGGGGAAAAGGAGATTATCAGATTGACTAT GTGCCTGCACCTCGAGTCACTGAAGCTGACAAAACCAATGATCGAAAGTCATTAAATAGAGCTCTTGACAGAAGACTCTA CCTTCTTCTCTTTGGTAATGGATATGGGGCTCCAAGCGGAAAGCCTGTATGGCATTTTCCAGAGAAAGTTTATGAATCTG AGGACACTATGCGTAAGTGTGCAGAGTCTGCGTTAAAATCAGTCTTAGGAGATCTTTCTAACACATATTTTGTTGGAAAT GCTCCAATGGCCCATATGGTTGTTCAGCCTAAAGAAGACCTTTCAGGCTCCACATCTTTTAAGAATTTCTTCTTCAAGTC ACAAGTAATTGCTAAAAACCAGTTTGACATCGGAAAATGTGAGGATTTTGTTTGGGTGACTAAGGATGAGTTGTTGGAGT ATTTTCCTGAGCAAGCTGAGTTTTTTAACAAGATGATCATTAGCTGA
Protein sequence (LotjaGi3g1v0388000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMSLLRPLVTRRGFSTSSEKLVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQYQRRYPDEFLDKSDARGKGDYQIDY VPAPRVTEADKTNDRKSLNRALDRRLYLLLFGNGYGAPSGKPVWHFPEKVYESEDTMRKCAESALKSVLGDLSNTYFVGN APMAHMVVQPKEDLSGSTSFKNFFFKSQVIAKNQFDIGKCEDFVWVTKDELLEYFPEQAEFFNKMIIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 227 | 217 | 2.9E-104 | ||
| Gene3D | 94 | 227 | 134 | 2.5E-31 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
Expression pattern of LotjaGi3g1v0388000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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