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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0388600 |
| Transcript ID | LotjaGi3g1v0388600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT4G01240.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15; TrEMBL-Plants: tr|A0A072TNK0|A0A072TNK0_MEDTR Methyltransferase domain protein, putative; Found in the gene: LotjaGi3g1v0388600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78540456..78542505) extracted from Lotus japonicus Gifu genome v1.2.
CAGCTAGGGAAGTGCCAAACTCTATTTATTAGCGTACTTAGGATATGGAATCAAATCTCATTATCCTCTATTCTCAGTTG TTCATTCTGATTTACCTTTTATAACTTATTTCACTGACAAATCATCAGCTTCAAAGTACTGTCCCATGATCAATTTTTCT GTCCTTGTTTTATCAATTCTGATGATGTGGCTGCATGAGCATCTTCTCTTTGAGATACATATGGTCAGTTATTTCTTAGT CTGAAACTACATATCTCAATTTCAAGGTATGTGTCTGTTTGAAAATTTTGTCTATTTTTTATAATGAATGTATGAAACCT TTGGATATTCTCATTCCTCAAGATACAGCAATGAAAAATCAGAAAGTTACTAAGAAGTTAAAAAGATGGAGAGGTGTTTA CCTTTTTATCTTAATAGTGGGTGTTCTTGCTCTTCTCCTTTATGGTGCTGCCTTCTCCAGATTCTTCTCCTTCAAATCAT TTCTCGGCACTGAATCCTTTTACTCCCATTTGAGTCCTGATAGCACAAATGGGAATCAACATAAAGGGATAATAACAGTG CAAATTGTGATTCAGAGAATTCAAAAGGAACTTGACAAACTGAGGGAAACAGAACAGGATCAATCATCATCATCATCACA ATCTGCACTGGAGCAAGGTGCTTTTCTTGCTGACATATTAGGGCTTCTTGAGTCAGTAGTGGAATCTCACCCACTAAGTG AAGGGAATGATCAGAAAAATGGAAGCTACAACACCTTTCTTCACCCTCCGATGAAAGAAGAGAAACAATCTGATGAACCT GGTAATTACTTTCTGCGCGAAGAAATTCGCAAGTATGTGAGGATCAAGCCTAACAGATTGGGAAAACAGAACTTCATGGG GGCAAATGCAACTTTCACCAGCATAGGACACGCGTGCTTTGCGATGAAGGAAGAGCTAGAAGAGTACATGGAGTATGATG TTGGAGAATTCTGCAATGATGATTGGAAGCTAGCTCAAAAGCTCATGGTTCATGGTTGTGATCCTCTACCAAGGAGAAGG TGTTTTTCAAGAGGCCCCAAATTCTACAGCCAACCATTCCCTATTGAAGATTCCATGTGGAAACTCCCTGATGATAGAAA TGTTAGATGGGGTAATTACAGGTGCAAGAGCTTTGCTTGTCTTGCAAGCAACAACAACACAAATAAGGGATTTTTCAAGT GTTCAGATTGCTTCAATCTCACTCATCATGAGATGCCAAGATGGGTTAGATTAGAAGGTGAATATTCAAATGAGAGTGCT GACTTTCTTATTAATGATGTTATTGGAATTAAGCAAGGAGAGATCAGAATTGGATTGGATTTCAGTGTTGGAACTGGGAC TTTTGCTGCTAGGATGAGGGATTTCAATGTGACTATAGTTTCAGCAACTATCAATTTTGGAGCACCCTTCAGTGAAATGA TAGCACTTAGAGGACTAGTTCCTCTCTACTTGACTATAAACCAAAGGCTTCCATTTTTCGATAGCACCTTGGATTTGATT CACACAACAAGGTTTCTTGATGGGTGGATTGATTTAGTGCTCCTGGATTTTGTGTTGTATGATTGGGATAGAGTTTTAAG GCCAGGGGGGTTGTTGTGGATTGATAGCTTTTTCTGCTTGAAAGAGGATTTGTATGATTACTTGCAGGCCTTCGAAATGC TGAGATATAAGAAACACAAATGGGTTGTTGCTCCAAAGCTTGATAAGGATGATAAGGAGGTGTTCTTTTCTGCTGTTTTA GAGAAACCTCCTAGGCCATTCCGGTGATCTTGTATCATGATCTTAGATCAACATTCTTTATATACTCTCACTTAATTTCT GATACATGTTAAGTTTTCAGTATTGTAGAGTTGTTTTCTGTGTTGTGTTAATAAAGTTTTGGAAGTGCTACTGACTATTG TAATATGTGTCAATAAGAAGCTTCATAGTTGAATATATAGTTCAGTGCCCATTCATTGAGGTACTTTCAGAAAAGGATTG ATAATGTATACTGTAGTTAAGTCTCCCTGATTTCAGCCAGGGCTTTATTT
CDS sequence (LotjaGi3g1v0388600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCTTTGGATATTCTCATTCCTCAAGATACAGCAATGAAAAATCAGAAAGTTACTAAGAAGTTAAAAAGATGGAG AGGTGTTTACCTTTTTATCTTAATAGTGGGTGTTCTTGCTCTTCTCCTTTATGGTGCTGCCTTCTCCAGATTCTTCTCCT TCAAATCATTTCTCGGCACTGAATCCTTTTACTCCCATTTGAGTCCTGATAGCACAAATGGGAATCAACATAAAGGGATA ATAACAGTGCAAATTGTGATTCAGAGAATTCAAAAGGAACTTGACAAACTGAGGGAAACAGAACAGGATCAATCATCATC ATCATCACAATCTGCACTGGAGCAAGGTGCTTTTCTTGCTGACATATTAGGGCTTCTTGAGTCAGTAGTGGAATCTCACC CACTAAGTGAAGGGAATGATCAGAAAAATGGAAGCTACAACACCTTTCTTCACCCTCCGATGAAAGAAGAGAAACAATCT GATGAACCTGGTAATTACTTTCTGCGCGAAGAAATTCGCAAGTATGTGAGGATCAAGCCTAACAGATTGGGAAAACAGAA CTTCATGGGGGCAAATGCAACTTTCACCAGCATAGGACACGCGTGCTTTGCGATGAAGGAAGAGCTAGAAGAGTACATGG AGTATGATGTTGGAGAATTCTGCAATGATGATTGGAAGCTAGCTCAAAAGCTCATGGTTCATGGTTGTGATCCTCTACCA AGGAGAAGGTGTTTTTCAAGAGGCCCCAAATTCTACAGCCAACCATTCCCTATTGAAGATTCCATGTGGAAACTCCCTGA TGATAGAAATGTTAGATGGGGTAATTACAGGTGCAAGAGCTTTGCTTGTCTTGCAAGCAACAACAACACAAATAAGGGAT TTTTCAAGTGTTCAGATTGCTTCAATCTCACTCATCATGAGATGCCAAGATGGGTTAGATTAGAAGGTGAATATTCAAAT GAGAGTGCTGACTTTCTTATTAATGATGTTATTGGAATTAAGCAAGGAGAGATCAGAATTGGATTGGATTTCAGTGTTGG AACTGGGACTTTTGCTGCTAGGATGAGGGATTTCAATGTGACTATAGTTTCAGCAACTATCAATTTTGGAGCACCCTTCA GTGAAATGATAGCACTTAGAGGACTAGTTCCTCTCTACTTGACTATAAACCAAAGGCTTCCATTTTTCGATAGCACCTTG GATTTGATTCACACAACAAGGTTTCTTGATGGGTGGATTGATTTAGTGCTCCTGGATTTTGTGTTGTATGATTGGGATAG AGTTTTAAGGCCAGGGGGGTTGTTGTGGATTGATAGCTTTTTCTGCTTGAAAGAGGATTTGTATGATTACTTGCAGGCCT TCGAAATGCTGAGATATAAGAAACACAAATGGGTTGTTGCTCCAAAGCTTGATAAGGATGATAAGGAGGTGTTCTTTTCT GCTGTTTTAGAGAAACCTCCTAGGCCATTCCGGTGA
Protein sequence (LotjaGi3g1v0388600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPLDILIPQDTAMKNQKVTKKLKRWRGVYLFILIVGVLALLLYGAAFSRFFSFKSFLGTESFYSHLSPDSTNGNQHKGI ITVQIVIQRIQKELDKLRETEQDQSSSSSQSALEQGAFLADILGLLESVVESHPLSEGNDQKNGSYNTFLHPPMKEEKQS DEPGNYFLREEIRKYVRIKPNRLGKQNFMGANATFTSIGHACFAMKEELEEYMEYDVGEFCNDDWKLAQKLMVHGCDPLP RRRCFSRGPKFYSQPFPIEDSMWKLPDDRNVRWGNYRCKSFACLASNNNTNKGFFKCSDCFNLTHHEMPRWVRLEGEYSN ESADFLINDVIGIKQGEIRIGLDFSVGTGTFAARMRDFNVTIVSATINFGAPFSEMIALRGLVPLYLTINQRLPFFDSTL DLIHTTRFLDGWIDLVLLDFVLYDWDRVLRPGGLLWIDSFFCLKEDLYDYLQAFEMLRYKKHKWVVAPKLDKDDKEVFFS AVLEKPPRPFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 15 | 490 | 476 | 2.1E-245 | – | |
| PANTHER | 15 | 490 | 476 | 2.1E-245 | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| Phobius | 28 | 47 | 20 | - | – | |
| Phobius | 48 | 491 | 444 | - | – | |
| Coils | 80 | 107 | 28 | - | – | |
| MobiDBLite | 134 | 162 | 29 | - | – | |
| MobiDBLite | 134 | 148 | 15 | - | – | |
| SUPERFAMILY | 313 | 469 | 157 | 2.75E-9 | ||
| Gene3D | 315 | 475 | 161 | 2.4E-5 | – | |
| Pfam | 332 | 439 | 108 | 1.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi3g1v0388600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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