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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0390100 |
| Transcript ID | LotjaGi3g1v0390100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Intracellular protein transporter USO1-like protein, putative; TAIR: AT5G41620.1 intracellular protein transporter USO1-like protein; Swiss-Prot: sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620; TrEMBL-Plants: tr|I1KI11|I1KI11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0390100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78808036..78812286) extracted from Lotus japonicus Gifu genome v1.2.
CTTGGGAACACAAAACTGAGGTAACTTGTTCATAGAACTTGTCACAGAGACATTGTCCCTTGTCATGTCTCAAAAAAGAA AGAAATAAAAGAACCATTTCAATCAACTCAATTTCTTAAAAATAAATCAAAATTGAAAAATTGAAACATTGAATTGTAAG ATAGATAGAGAGGTGAAAGAGGAGACAACAGAAAGAGAGAACAAATGGCAGAAAACTGGAAGCAGCAATGGGCGATGGTG GTGGGGAAAAGGGAAGAAGGACCTTCTACTCCACCACCAACATGGAGACTTGAGCAGAATGGTAGTGGTGACAGCAAAAA CCCGGTTCAAGAGTTCCTCAATGTTCCCATTTCTACAGTTTCTGCAAGGAAGCTCTGTGCTAACCTCTGGGAAATTCAGC CCCACCACCAACAAACCCCACTTGCCAAAATGAACAAAACCGGCACCACACTCCGCCGCCGGCGCCGCCGTAGGGACAGA GTGGCTGAGCCTTCTTCCAACACCCCTTCTGACAAGGTGTTGTCTGCTTTCCTCACATGAACTGTTTGTTTTGCACTGTT AAGCTCTACCTGCTTTTTTTTCCTTTTTTGGAAACTCATTGTTTTTGGTTCTCTGCTAGTTCAGTAGAAGTGCCTGTACT CTAGGAATTTCTCCCCTTGTCTTCTGTTTCTTGTTGGCTTTTCTTTCACCATTTCTTTCAGTCTAACAGGATTTTGCTCC TTTGGGATCTGATTTGGTGGGTAGGGTACCCATTTGTTCCACTTAGTTCAACCATACACATATAACCTTAAACTCTATCT GTGACTCATGTTAAATTTCTCCCCATCTTTTTGCTTTATTCCTTTATTATGCCATACAAGTGAAAATTTCAGTTTCAGTT TAGAAGTTTGCAATTGATTTGGTTTGTGTATATTACTTAAGCAAGTGGTTTAGATGTGTGGAAAAATATTATGGGTTAAC ATATGCTTTATTTCAATTCTTAAACCTGGAAGCTACTCACAGAAATTTCTCCCCACAATTGATTATAGCTCCAGAATCAA ATGCAGAAGGGTTTTCAAATATGCATTTCATTTTCCCCTTAGCTGGTTTTCATTTTTCATCCTTGTTGCTTGTTTTCTTC ACTTTGCCTTGCATTTTTATTGCCTGATGAAACTAATGTAAGTCTGCTTTGATGTTTTAGTTCCTTTCAAGTTTCTGGTA GATGATTGATTCTGTATAGCTCCCCATTCTTAAACAGCTTACTTCTCATTAGAGGCATCCAAGCATATTTTTTCCTACAA TTTTTCTGTTGGTAAACCTTTCTTCCCATAGTTTGTTAACCCACATTGTCTTTTGTATGCAACTTCTAAGTGAGGCAAGA AGCCAAGCATAGGTACCTAACTGGCTAGGAGTCTCTTATGTGGAGAGGTGATTTATTGTTCATTTATTGCATTTGTGTGT TGTTTTTATTTAGCTAGATTATGATGAGTTGAATTGCTTTCACTGACATAGTGAGATCCTTTCAACTCCTTCAACTGCTT CTCTTTACTTTGGTCTTTGGCTTGCATCAATGCAGCTGAATAAGTTAGAAGATAGAGATTTTTGAATGCTCAATTCCTGA AGTTGAAATTTTGTTGTCAGCATTTTGGGTACTATTGTTGCATGTAGAAATATCTGTATAGTGTCTTCTTTTTTAATTAG ATTTTAATATATATTTTCTATTGAAATGCTGACTGTTGCCCGGTTCCTTATTGCAGCCAGCATCTGCTAGTAGTGTGAGA AGACATGTTGCTGCATCACTTGTTCAGCACCATAGATCAGTTGAGAGCAATGGCAGTGCTCAACAGCCTGTATCACCCAC TTGTTCCAGCAGTTCAGTGGAAGTAAGCATAAATTTGTCCATTTGAATCTTGTCTATATGAGTCTTATGCAGTTTTATGT TTCATTCACTGATTTTATGGGTTTAGAGTTTAGGTGATGGACTTCTATTTAGATAATCAGTTTTTTTCGAAAACGAAATA GACACACACACACACACACACACACACACACACATAATATATATTTAAGTTGAGAAACAACCCCTCTCAACATGGGTACA GTAACAAGCCAACAAAAAGCTGGCAAAAGCTTAGTCGCTACAGCCAAACCCTCCCAAAGGCCTCTAAAGAAAACCCCCCC ACAAGATGCTTTAAAGCCAAACCAGAACCCCTGCGTCTGCATAACTGGGAAAGACCCCCATTTGTAGTAAAAAAAACAGA GACAAGAATAAATCCTACCAAACTGCACGACACAGAAAACCAGCAAACAGGTAGATAGTTGAATGACTATCTTAGTCTTA ACTATAATCCCTGTTTTGTTTGCAATGAGACATAGAGCCTGTTTGGGTACGGACTTATTGGACCTTATCTACTAGAAAAT GGACTAAATAAGCTTCAATAAGTGTTTTTTGCTTTGCATCCAAACAGGCAAATAGTTGAATGACCGACTGTTTCTTAATT TAGATTGAGACATTGAAAAACTGACTGTCATGAATCTTGAATCTTGATGCATTGATTCTCTTCAATGATCCTTCTGTAAT AATTTTAATACATCTCCTACAAACTTATTGTAGACCAGAGAATTTTCTAAATGTATTTTTGAAGTCCTTTGAAGCTGTCA GAGTCATGCATATGCTATTTGCTGCAAACAGGTGGCACCATATAAATCTGCAGTAACTCCCACAAGTTCCTTAGACTTCA AAGGCATGGTTGGCGAGTCTAGTTACGGTCTTACAACATCCACAGAGTTACTTAAGACACTCAACCGTATCTGGAGTCTT GAAGAACAGCACGCATCAAATATATCACTAGTGAAAGCCTTAAAAACTGAACTATATCACTCTCAGACTCAGATTAAGGA GTTACTAAGTGAGAAGCAAATGAATAGGAAGGAAATAGAGAACTTGATGAAGCACATGACAGTGGACAGACTTGTTAGGA AGAGCAAAGAACATGACAGAATTAAAGCTGCAGTTCAACCAATCAAGGAAGAGCTAGAAGATGAAAGGATGTTACGAGAG CATTCTGAAAGTTTGCATCGGAAGCTGGCCAGGGAGCTTTCTGAAGTAAAGTCTTCGTTCTCCGGCTGTCGGAGAAATCT AGTAAGAGAGAGGAAAGCACGAATCCTTTTGGAAAATTTGTGCGATGAGTTCGCCAAAGGAATCAGAGATTACGAGCAAG AGGTACACTCTCTTAGGCGGAATTCGGAGAAGGGTCAGGTTAAAGGCAACAATAGCCTTGATAGGCTGATACTTCATATT TCAGAAGCTTGGCTTGATGAGCGCATGCAAATGAAGCTAGCCGAATCCGGCAGCGATCTCGTAGATAGAACGTCAATTGT TGACAAGTTAGGCTTCGATATTGAAACATTTCTTCATGCGAGAAAATCTGTTGATTTGAAAAAATATGGTTACTCCTCCC CGAAGGAGCTCAAGGAAATTTACCCTTGTCAGCATTCACTGGAATCCTTTCCACTACATGAGGTTGGAAGTGCACCCCAG AATTTGGCTCAGGAAGATTCCATTGACAGCAGGACTTTGTTAAAGGAAGAGGCCAAACAAGATCCAAAGGAAAGTGATAG TGCCAGACCAAACCAGATTGGAAACAGTTCCTTGTTGTCATCAGAAGGTGATAAGATTTATCCTGAGAGTATTTGCAGGG AAGATTCTTGTGTCCAGTCTGCAGTTACAGCTAATGGTGGTCATGTGAAAGTGTGGAAATTGAAGTTGAGTGCTTCAGAT TTTGACAACTCTGAGTCTCCTACCAAATTGCCTAAGGGAGTAAAGGAAAACACATTGATGGCAAAACTGCTAGAAGCAAG ATTAGAGGGACAGAGAAATCGCTCTAGAGCTGGCAAAAGCACTTCCTAATATGAGTAGAGAAGTATCACATGGAAAAATT GGAATGTGAAATAGTTGCTATGGGTAATTGGGTATGACCGAGGGATCTCTCATCAAATTCCTGTAACCATGTTGTATCAT ATATGCAAGAATCATTAAGTTATTCAAAGTTGAGAAATGCTAGCAACACACTTTCACACTTCATGTGGTTGGTTTTTTTT TAAAGAGAAAAATGATGATGCACCTGGACTGGGCGAGCCCCTAGAGGGGCAACGCCCAGCATGTATCCCGCCCTGAGGCG GGGCCCTGGCCTTCAGATGGGCCTTGACCTCGGAGGCCCAATTGGCCCAATAGGTAGTACCCAAGCTCTATAAATAGGAG GTAGTTATCAA
CDS sequence (LotjaGi3g1v0390100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAAACTGGAAGCAGCAATGGGCGATGGTGGTGGGGAAAAGGGAAGAAGGACCTTCTACTCCACCACCAACATG GAGACTTGAGCAGAATGGTAGTGGTGACAGCAAAAACCCGGTTCAAGAGTTCCTCAATGTTCCCATTTCTACAGTTTCTG CAAGGAAGCTCTGTGCTAACCTCTGGGAAATTCAGCCCCACCACCAACAAACCCCACTTGCCAAAATGAACAAAACCGGC ACCACACTCCGCCGCCGGCGCCGCCGTAGGGACAGAGTGGCTGAGCCTTCTTCCAACACCCCTTCTGACAAGCCAGCATC TGCTAGTAGTGTGAGAAGACATGTTGCTGCATCACTTGTTCAGCACCATAGATCAGTTGAGAGCAATGGCAGTGCTCAAC AGCCTGTATCACCCACTTGTTCCAGCAGTTCAGTGGAAGTGGCACCATATAAATCTGCAGTAACTCCCACAAGTTCCTTA GACTTCAAAGGCATGGTTGGCGAGTCTAGTTACGGTCTTACAACATCCACAGAGTTACTTAAGACACTCAACCGTATCTG GAGTCTTGAAGAACAGCACGCATCAAATATATCACTAGTGAAAGCCTTAAAAACTGAACTATATCACTCTCAGACTCAGA TTAAGGAGTTACTAAGTGAGAAGCAAATGAATAGGAAGGAAATAGAGAACTTGATGAAGCACATGACAGTGGACAGACTT GTTAGGAAGAGCAAAGAACATGACAGAATTAAAGCTGCAGTTCAACCAATCAAGGAAGAGCTAGAAGATGAAAGGATGTT ACGAGAGCATTCTGAAAGTTTGCATCGGAAGCTGGCCAGGGAGCTTTCTGAAGTAAAGTCTTCGTTCTCCGGCTGTCGGA GAAATCTAGTAAGAGAGAGGAAAGCACGAATCCTTTTGGAAAATTTGTGCGATGAGTTCGCCAAAGGAATCAGAGATTAC GAGCAAGAGGTACACTCTCTTAGGCGGAATTCGGAGAAGGGTCAGGTTAAAGGCAACAATAGCCTTGATAGGCTGATACT TCATATTTCAGAAGCTTGGCTTGATGAGCGCATGCAAATGAAGCTAGCCGAATCCGGCAGCGATCTCGTAGATAGAACGT CAATTGTTGACAAGTTAGGCTTCGATATTGAAACATTTCTTCATGCGAGAAAATCTGTTGATTTGAAAAAATATGGTTAC TCCTCCCCGAAGGAGCTCAAGGAAATTTACCCTTGTCAGCATTCACTGGAATCCTTTCCACTACATGAGGTTGGAAGTGC ACCCCAGAATTTGGCTCAGGAAGATTCCATTGACAGCAGGACTTTGTTAAAGGAAGAGGCCAAACAAGATCCAAAGGAAA GTGATAGTGCCAGACCAAACCAGATTGGAAACAGTTCCTTGTTGTCATCAGAAGGTGATAAGATTTATCCTGAGAGTATT TGCAGGGAAGATTCTTGTGTCCAGTCTGCAGTTACAGCTAATGGTGGTCATGTGAAAGTGTGGAAATTGAAGTTGAGTGC TTCAGATTTTGACAACTCTGAGTCTCCTACCAAATTGCCTAAGGGAGTAAAGGAAAACACATTGATGGCAAAACTGCTAG AAGCAAGATTAGAGGGACAGAGAAATCGCTCTAGAGCTGGCAAAAGCACTTCCTAA
Protein sequence (LotjaGi3g1v0390100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAENWKQQWAMVVGKREEGPSTPPPTWRLEQNGSGDSKNPVQEFLNVPISTVSARKLCANLWEIQPHHQQTPLAKMNKTG TTLRRRRRRRDRVAEPSSNTPSDKPASASSVRRHVAASLVQHHRSVESNGSAQQPVSPTCSSSSVEVAPYKSAVTPTSSL DFKGMVGESSYGLTTSTELLKTLNRIWSLEEQHASNISLVKALKTELYHSQTQIKELLSEKQMNRKEIENLMKHMTVDRL VRKSKEHDRIKAAVQPIKEELEDERMLREHSESLHRKLARELSEVKSSFSGCRRNLVRERKARILLENLCDEFAKGIRDY EQEVHSLRRNSEKGQVKGNNSLDRLILHISEAWLDERMQMKLAESGSDLVDRTSIVDKLGFDIETFLHARKSVDLKKYGY SSPKELKEIYPCQHSLESFPLHEVGSAPQNLAQEDSIDSRTLLKEEAKQDPKESDSARPNQIGNSSLLSSEGDKIYPESI CREDSCVQSAVTANGGHVKVWKLKLSASDFDNSESPTKLPKGVKENTLMAKLLEARLEGQRNRSRAGKSTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 448 | 446 | 5.7E-212 | – | |
| PANTHER | 3 | 448 | 446 | 5.7E-212 | ||
| MobiDBLite | 12 | 40 | 29 | - | – | |
| MobiDBLite | 25 | 40 | 16 | - | – | |
| MobiDBLite | 69 | 148 | 80 | - | – | |
| MobiDBLite | 122 | 148 | 27 | - | – | |
| Coils | 214 | 234 | 21 | - | – | |
| Coils | 310 | 337 | 28 | - | – | |
| MobiDBLite | 445 | 471 | 27 | - | – | |
| PANTHER | 447 | 549 | 103 | 5.7E-212 | – | |
| PANTHER | 447 | 549 | 103 | 5.7E-212 | ||
| MobiDBLite | 456 | 471 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0390100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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