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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0392200 |
| Transcript ID | LotjaGi3g1v0392200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | mediator of RNA polymerase II transcription subunit; TAIR: AT5G12230.1 mediator of RNA polymerase II transcription subunit 19a-like protein; Swiss-Prot: sp|Q9FMP0|MD19A_ARATH Mediator of RNA polymerase II transcription subunit 19a; TrEMBL-Plants: tr|V7ANR4|V7ANR4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0392200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79103015..79111295) extracted from Lotus japonicus Gifu genome v1.2.
CAATTCTTGGTTTCATGTCATGATGAGCGAAATATCGTCTTGATTCATTTCACTTCTCATCCGCTTGTGCATATAAAGCG CATCCTCCGTCTTCGATTTGTTCTACCCACTTTCGCATAAGTTATTGAAAGTAAAAATTTTGGTACAATTCTTGGTTTCA TTTTTGTTTCATGTCATGATGAGCGAAATATCGTCTTGGTTCATTTCACTTCTCATCCATCTCTGCTTGATTTGTTCCTA TCCGATCTATATTGTACATACCCATGGTCCATCTCATCAAATGATAACAATGAGATTTCAAGCAACGAGAAATGGCGACG ACAAGACTATGACTCTCAACAATGTCATCAAGGTATTACGAGATCCATTTCATATAAATTATTGTTGATTTTTTGCAAAC ATAAACTGTGATTTCAAAACCTAGTTTTGCAGATTGTTGATTTCATGATTTTTTTTTACAGAAATTGTGGATCTAATGAC TCAAACAGAACTGATCCGATCCGATTTTTTCTTTTGTGATTGAACCAAACAATTTGGGTTTAAACTACATGGTAACATTT TCCGAGACAATCTTGTTCAAATCGGATAGAAAAATTGTGGGCGGCGACACTCTTCCTACCTTATTGTATTGATTTGATTC AAATTTACAATTTGTTTGCAAAATTGAAACAATTAATTTTGATTTCTCTTTTTTCCCCCAACATGCAATCAACTTCACAA ATCCAGAATCCAATTCATAATTACTTCAAGCCTGTTGCTTTAAAACAAATCTTTTTTTCCACAAAATTTAGGGTTTCAAA GCAAAATCCACTCCCAATTTTTCTAGAAGAACACTAAAAAGTAGAAAGTGCCTTTCTAGTATACTTGCCAACTTATTCTC TAGATTCTATCTTGTTTGGTTATGTACCTTGTCTCAAATGTGGTCTCTTTGTTGTACTTCATTCAATCAAACTTGAGCAA AAGAAAGCCCCAATTTTCAATTGCCTACTCCAAAAAAAATTCAAAACAAAAAGTAGAATTTTTCTTGCAATTCCACTTTT GTCCAAACTAGTCCACCATTTGCCATTGGTGAAATTGACACTTGATCCAATAGCAATTGCACTAGCAAAGGGTAAAACAG AAAATTTGGTGGAAGATTAGAGCTAAATATAAATGAGAGGTGGCAGCAATCATGGGCAAAAACTTGGGAACATAAGGGAA TTTTGGGTTTTTGCTCTCTGTTGTTGAGACTGAAACAAGAGAAAGCACAGAACTTTACCCCAAAGATCTTCCCTTTTTAT TCTCCTCTGAGAAACCCCTCAATCTTGTTCTTGTTCCAGTGTTTGGATCTGCACTTTTTGCAGGTTTCATTCTCGGGAAC GAAGGTCAATACCAATTTTTCTCTCGCTGCTTCCTCTGGTTTTTCCCGCACAAATATACCAAAAGCTTCGTTTTTTCTCA GATTCTCGAGTACCCTTTTGCGGATTTTGGCTGTTTTCGCTGGAAGGATATCTATTGAGCAGAACTTTTGCAGAATTGTT GGGTGGTTGAAGGTTTGGAAGTTTCTCGATTGGGGTAGCTTTTGGGTTCGTGATAGTTTGAAGGGGATTTGTCAGCTTGC TTGGAAACTCAGAATTTAGCATTCCCCAGGTGGGTTTTCTTTTCTTCACTGTTTTGTTGATTCCTGTAGAAGTTGATAGT TTTTAGGGTGTTTCATTCATGGAGCTATTCTGGTGAATTAAGGTTTTTTTGTTGTTTTGTTTTTGTGGGTGTGTGACTCT GTGTTGTGCAGACTTTGAGTAATTTGCTCCTAGAATCTTTTTTGAAAAGCTGTTAATTTTTTCTTGAACGTTACGTTTGA ATTCTTGATAATCTGAAAGGTGAAAAGTGAAAAATCATGTAACAATTGTTAGCTGAAACCATGCAAGTAATTGGAAACGG TTTGAAATTAGAGTATTTGCAAACTTATGGGTGTTTGGTAGTTGCACTGTTTTTTCACTTAGTTTCCCCCCTTTTCTGTT GAAAGCTGAAAATTCAATCTTTTTGAAGCTGAATCAATCTTGTTCTTGTCATCCCTTCTGAAAATAAAAGGGGAAAACTT TTGTTTTTGTTCCTTTTGGAATTGAATTATATGAAATTATGAATTCAATTATATGACCCATAGTATCCATGTGAGTGTTT CTCAACTCTGATAATGTAAATTTTGTGTTTTGAGTTTATATCTGCTTACACAAGCTATATCTTTTGTAGTTTTGCACTTA TGCTTGTGTCTTTGCGTTTCCTAGTTGTTTAAATTTATTAATCAACTGCATTATTTGAATGGCATTTCGTAAGTGATTTT ATGGCCTCTGGTATTTAATAATGTTATGACCTTTGGTATTTTACCGCCTGCAATGATGTCGTGTGACCCAGATAGCCAAC CTCATTTAGTGGGATAAGCTTTTGTTGTTGTTGGTTGTATTTAGAGTTTGATAATTGAAAATTCAAAAATATGGAAGAGA ACAGATTTTATGGGTGCATTTTCTCCTTGCATATTATTGGCTGTGGGCATAAAGTAATCTGTTCTGTTGGCCTTATGCTG GGAACATATTCTGTTAATTGGTCTTGTACTCTTATTTTAGTGTTTGTAACTATTGATGTTTTGTTGGAATTCTTTGGGAA TTCTTTGGCTTCTTAATATCTTGCTAGCCTCCTTCAAAGTTTTAGCTGTACACAAATGATTGTGGGATAGAATAACCTTT CCTGTTAGACAAACTGAGAACAATTTTTGACAGCTAGTGTTTTTAAGTTATTAGGGTTGTGACACAAGTAAAATGATGTT TTGTCGGAATGCTATAGTTTTCGTAAGTGTCTTGGAAGCTTCCTTCACAGTAATTTAAGAGGATAACTAGAGGAAAAGAG TGATTTATTTAACTTTGGGCGGTTTTTGTATGATAAATAATGACTTGTGGTGAGATATGTGGGCATCATACTATCATCCG CTACATTGTGAGCCCCTAATGAGTTTTTGAGGCTTCTTCTGTTACTGTATGGTAAGTGGCAGCACTTATTATACCAATAT CTGTTCTAGAGTGCTGTGGTGCTTCGCGGTAACTAGCAGGATTGATGGTTTTTTTCACCTGTACAGTTGATACATAATTT TTTTTTCTGTCAAAACATGAAAAATAGGTTCTATCAGAGGTTGAATTGTTCTGGGACTGCATGGAGTGATAATTGAACAG TGTAATAGGTTTGTTTTTTGCCATGAAGAGTAACTTTGGATATACCAAAGAATAGTGTGTCTGATAACTGGCCACTTTAA CAGGTTCTGTGGACCTTATTTGTTATTTCAAATTATAGCCTCACCAAGTTTTTCTGCAAGAGGCCTCTTCCTGTTACAAA TTCAAGATTACACAGAGTACTCCTTGTTAGTTTAGAGATGAAGCAGCTTTGTTGCATTGTTATTTTCTAAGTGTTGCATT GTTATTTTTAAGTGTTTTTTTTGTGGATAACTTTTCCTAACTCACATTGTATTTTCCTTATATTTTCTTTACATAACTTT TAAGTAGCAAAAATCTCTACCCCTGTATGCTAAACTGACTACTGATCTCAGATGAACACAGAATCATGAATTTCTACCAT TGGATGCAGAACCTACATTAGTAATATCTTGCATTTGAAACCTCATTTGACATTGATGGATGAGATTCATTATTTTTCAT ATTCTAAAATGCAGTTGATAATGGTTCAAGAACTCATGAAAGCTTAGCTCATGGATCCTGAAGTCAAAAAGTTTGGAGGA GGTAAAAGTTTTATGCTAGTGCCCTTCGTTGTCTATGCTATTGTACAAATATTTGTTTGTTGTCTAACTATTCTAGTATT TGACATGGCAGTCCTGATTTTCTATCTGCATGGCATTGACTGTACCTGTTATCCAATTCACATTTCTTAGTTAAATTTCC AATCAGTTGGTATTCTTGACCTGAATACAATCTCCATTTGCCTTTTTGGCAGCAGATTTTAAACTTGCTCAATTAGAGCC TGTTGAAATTTTTGGAATAGATAGAAGAGAAAATATATTTAAGTAATGAGACTTCTAATGATTGTCATTTTATGATATAA ATGGCTATCCTTATACTCCAATTGTAGTAATTATTGGCTAGCAAGATGAAGTGTTTTCAGATTCAATTTTTGTAACATTG GTGTTTCATTTTCTTTATTGGTGTTTACTATTTGAAAATTGAAATAGACATAGATATGCCATTAATCTGCAATAGTGGGC TGATAATGAAAAGGTTATAGGCATCTCTTGGTATATCACCCCAGCTAACTAATTGTAATAGTTACAACTTTAGATGTTAG CATTTTCCGTTATTAGAGTAGAGGGAGGGTGGGAAGATAGGATAGGGAAAATTTGGATTGGAGTTGGAAGCGTTCAGGGT CTCTTGAAAACCCTGAGGAGTAATTGCTGATCAGTGGAGGATTTGCTGAATAATGCAGTCTCTTGCTTTCTTTCTGGTTA TCATCATGTTTTTCTTTTTGGTTACAAGTTTTTACCTTCAGGTCATATTCTTGAATGGGCTTAAAGTTATGGTGAGAGCA GAGTAGAACTAAAGTTACATTCAGCCGAGTCTTTATCGCAAATAATGGATGTGGAAAAATTAAGAAGAATTTGATCATTC GCAAAGGGAGGTGATGTTAGTAATGTTGGGAGGTACAGAAAAAACAACTACAGGGTTAACAGAGTGTGGAGAAAGTCAGT TAATGGGATCGGTAAGAGCATGAATGGCGACCCTGGTTGTTGGGCCATGATATGGACCCAGTTGCTAGTAATAGGCACAA TACTAGAGCCTATGAAAGCAGGAGGAAGAGGTGCGATGCATCGGATCAGTCCCTGTGAGAGGAATAACCGCCTGCTGAGG TGGTAGGGGCGTGGGATCCATGTGGGTTAGATCTGGAAAATGTGTGTGAAGGGTATAACAAGTGAAACACGGGAAGGGGA GAGGTAGGCTGTTATTTTCTTTGGGCTTAGACTGGGAGAGACAAAGGCACTCTCTAATTTGCCTCTGTTATTGTTTATCA TCTTCTTTCTTTAAACACTGTTATACAGGATTCCGGTGCATTTCTTAAGTCCTTAATATACTCTACAAATACAAGTGCAT TTCCTTCTAGATTGTTTTCTTGCATTTCTGGTACCTAACAGGTCTAACACTAGATCTAGTCAGAGAGTGATCTGGTGGAG GATCTTTTAACAAACATACGACGGTGATGGAGGAAAGTAGCAGAGGAAAACAGCTATCAGATTCTGAGTACCAAGAATAG AGGAGGAAAGGATTATGTTTCAAGTGTAACAAAACAATTTCACTTGGAACATATCGGCAATAATAAACACACCTTAGGGT CATGTTTTATAGGATTCTAAGGAGAAGGAAATCATAGAATGGGAGGGAACTTGATCATATATTTGTTTATGAGGAAGATC TTACACTGTATTTTGCTTTTCAAATATGGTATGAAACAACTTTATGTGTCAACCTAATGGCAAAAATAATAGGGTTTTTT CAGGATCTCATAATTTACTAATGTTTTTTTGTGTTTAATCATGATTCTTACTTGGTAGTTGATTGAATTTATTGGATGAA AAGAAATGGGAAAATATAGATCTATAATGCTCTAAGCATCTTTATAGATTTTGAGTCATGTAAAAAATTATCCTGCAATC ATCCCTTTTAAAACATTTTTACTACAAGTTTTCGTGTGGTTATTTTATTTCTAAGAGAGTACTTTCTCATTGAAGACATC TGTGTTCTTTGAATCCCCAGGACCAAGGGAGTTGACAGGTGCTGTGGATCTTATAAGTCATTTCAAATTACTACCCCACT ATGAGTTTTTCTGCAAGAGGCCGCTTCCTGTGTCAGTTGCAGACACACACTATCTTCATAATGTAGTTGGGGACACAGAA GTACGAAAAGGAGATGGGATGCAACTAGATCAACTTATTCAGAACGCATCTTCCTCCAGAGATACAAATGCCCGTATACA GCCTTTTGACTTGGATGTTCTCAAGGAGGCTTTCCAACTAAGGGAAACAGCTCCTGTTGATTTGCCTGCTGTAAGATATT CTGTGATTATGGTTGCCCTTAATTTGCTGTTCTTGCGGAAATCAATTGACATGCTATTTTGATTTTTTAAACTAAACACT ATAGTTTAATAATGTGTTCTTTTTGGACTGATATATGTGCTTACTCCTTGTTTTGCACCTAATAGGCGGACAAAGGGATT CCAACTATTGCAGGAAAATCAAAAAGTGAAAATAAAGACAAGGAGAAGAAGCATAAGAAGCACAAAGACAGGGGGGACAA GGACAAGGACAAGGATAAGGAGCATAAGAAGCACAAACATCGTCATAAAGATCGAAGCAAAGACAAAGATAAGGACAAGG ACAAAAAGAAAGATAAAAGTGGGCATCGTGATTCCAGTGCTGATCACTCCAAGAAACACCATGATAAGGTTTATAAATTT TAATTTTCTGCATCTGTATTGTTCACACCGAGAAAAATGTTCTAAAGTCATTTCATGCCATAACATACAAATTAATTTAA TATATTGGCTTCATGAAATTTTACTGTGTTGTGCTGATGGTGCGGGTGACCCTCAATTACTTGTGATTTAGGATCCCATG ACCCCGATATCACCACTTTAGAGGGGCTTTGCTTCACATACTATCAGGACATGTTGCAGATATTTATTTCTGTTTATTGA TCTATTTTAAAATATTTTTATTTCAGAAAAGGAAGCATGATGGAGACGATGATGTTAATGATATGCACAAACACAAAAGG AGTAAGGTAATAAAGAATCTCGGGATGAGTTTTCAACCATTTTTTCTATCTCTTTCTTTTCTACATTTCTGCTATCTATT TCTTTGTGGTTGTTGTTGACCGTGTCTAATGAACTTCTGTTCAATTTCTTAATTTCCTTGTAGCATAAGAGTTCAAAAAT TGATGAATTGGGGGCAATAAAGATTGCAGTCTAATACAGTTACATACTTTAGTTCACTTCTTTTCCTCAATTGGTTATTG TCATTTGTTTGGAGGAGTCTTTGACTTGGATCATCAGATTTCTTGAGGTACTTCATTATATTTGCCACAAATTTTAATAT TCCTCTGCTGTTTATGTGCTTCATTCTTTCTTGAAATTTTATTTTATTTTATTTTATAAATGGTTGATGGTGCACCTTTA ATTCTAGCTAAATTGTGTCAGTCATCTTTTTGAGTCCAAGTTATGAGACTCAGATCGCTATCGTGCACTATAGATCTGAC AAAATTACTAAATTGAGCGAGAAATCTCTTGTCTCGTTCAAATGTAGTTGTTGGGGAGTAGAGGGAGAGTGAAGATAGTT GTTTTTTTAATCTGTTATGAAGAATGTATTTGTTTTTTAATCTCTTTTAAGTTTTAGAAACGAAAAACCTTAGATATTGG TTTTATACATAATCTGGTTTAAAACCAGAACCAAACTAAACTGATTTTGATACAAAATTAACTAGTCCAGTTTTAAAATC CAAACCATATTATTAGTTTATATTTGGTTTGGTTTTTTATTTAAATCCAAACTCTTCCGACCCCTGTTTTTGATAGCTCG AAAGCTTATCTCATGGCTTAGTATATATGATGTGTTCCATTTTATTTTTTGCAGAGTAGCTAGTGTTCTGACTAAAGTGT ATCATGAAGGTGAATTCACCTGATGAAGGGAAAGGATGAAAGGTAAAATTTGCAGAAGGAAACTGTTATTTGTACAATAA CAATTATCTTTTTTATGACTGCTAGTAATTTGCAAAACTTTGGTGGTTTTCCTTTTCCCCAGTTTTTTGGCGCACCGGAT ATCTCAACTTGTATGATTATTTGGATTTCTTTTAAAAACATTCCGTAGTCTGTTTATAAACTAATCAAGTTTAAACTAGA GCTAGCATTCTTGTTTAGAGTAACCGAATTAACTATGGGGGTTATGTATATCGATAACGTCCCCCCATATCGTCATGTAT CTAACACCGCGTATTGAATGTATGGCTATGTATATCAGTATGGTATAACCCTTAACAACAAATGTACAGGAGTATCTATC TCCTTTTGATGAGATAGATGGAAGGGCCTCTCCAAGGAATGACCTTTGTTTCCCCCCCCTTTCTGTGCATCGTTTCTGAA TGTGTTTGTATGATCTAGTTAGAGCCGGTTTGGATATTAATTTGGAAGTATGAAAACGGAAAAATGAGATGTGTTAGCCT GTTTGATTACAATTTTTAAAAACTATTTTTTGTTTTTAAAA
CDS sequence (LotjaGi3g1v0392200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTGAAGTCAAAAAGTTTGGAGGAGGACCAAGGGAGTTGACAGGTGCTGTGGATCTTATAAGTCATTTCAAATT ACTACCCCACTATGAGTTTTTCTGCAAGAGGCCGCTTCCTGTGTCAGTTGCAGACACACACTATCTTCATAATGTAGTTG GGGACACAGAAGTACGAAAAGGAGATGGGATGCAACTAGATCAACTTATTCAGAACGCATCTTCCTCCAGAGATACAAAT GCCCGTATACAGCCTTTTGACTTGGATGTTCTCAAGGAGGCTTTCCAACTAAGGGAAACAGCTCCTGTTGATTTGCCTGC TGCGGACAAAGGGATTCCAACTATTGCAGGAAAATCAAAAAGTGAAAATAAAGACAAGGAGAAGAAGCATAAGAAGCACA AAGACAGGGGGGACAAGGACAAGGACAAGGATAAGGAGCATAAGAAGCACAAACATCGTCATAAAGATCGAAGCAAAGAC AAAGATAAGGACAAGGACAAAAAGAAAGATAAAAGTGGGCATCGTGATTCCAGTGCTGATCACTCCAAGAAACACCATGA TAAGAAAAGGAAGCATGATGGAGACGATGATGTTAATGATATGCACAAACACAAAAGGAGTAAGCATAAGAGTTCAAAAA TTGATGAATTGGGGGCAATAAAGATTGCAGTCTAA
Protein sequence (LotjaGi3g1v0392200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPEVKKFGGGPRELTGAVDLISHFKLLPHYEFFCKRPLPVSVADTHYLHNVVGDTEVRKGDGMQLDQLIQNASSSRDTN ARIQPFDLDVLKEAFQLRETAPVDLPAADKGIPTIAGKSKSENKDKEKKHKKHKDRGDKDKDKDKEHKKHKHRHKDRSKD KDKDKDKKKDKSGHRDSSADHSKKHHDKKRKHDGDDDVNDMHKHKRSKHKSSKIDELGAIKIAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 222 | 222 | 5.4E-105 | – | |
| PANTHER | 1 | 222 | 222 | 5.4E-105 | ||
| MobiDBLite | 106 | 224 | 119 | - | – | |
| MobiDBLite | 159 | 203 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Cellular component | Mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
Expression pattern of LotjaGi3g1v0392200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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