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LotjaGi3g1v0393500.1

Overview

Field Value
Gene ID LotjaGi3g1v0393500
Transcript ID LotjaGi3g1v0393500.1
Lotus japonicus genome version Gifu v1.2
Description Transcription factor WRKY; TAIR: AT2G46400.1 WRKY DNA-binding protein 46; Swiss-Prot: sp|Q9SKD9|WRK46_ARATH Probable WRKY transcription factor 46; TrEMBL-Plants: tr|B3IX40|B3IX40_LOTJA Transcription factor WRKY; Found in the gene: LotjaGi3g1v0393500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:79260517..79263759) extracted from Lotus japonicus Gifu genome v1.2.

CTCTCTTTTTCTTTTGCTTATAAAAAAAAACTCTCTTTTTCTTTTTTCCTTTTTTCCAACAGGAGAATTTAATAGAATCT ACCTTTATATCTAAGGCCTCATAACAAGGGACCCCACATTTGTAGAAAACTACTCACATAGTTTTGTTTAGTCAAATCTA CCTCTTTTCCTTCCCTTTTCTTTCCTTTATATCTCCCTTTCCTCTCACCTTCTTTCAAAGCACACCCCTCTTGCCCATTT CACACACATATATATATCTCCAATATCTTCTTCCTTATAACTCACCATCTCCTCATCAATCCCACTCCAAGTGTCCACTC ATCTTCACTTGTAAATTTGAATGATCCATTTGCCACTTCATCATCACCTTACCACCTGGCCTAGTTCACTTGGACAATTT CATAAGAGTTTTCAAATTCCTTGTTCTTCATGCTTTTGCCAAAATAGCAACACTAAATCTTATCCTGCATATTCTCTTTC CAAATTAGTCCTATAATCTCTTGCAATCCTCAATTAATCAGCAAGACTTTGCCCAAGGTTTCAGCAGCAACTCAAAATTG CTATTAGTTATTTCATCTTCACAAAATGGAAGAGAACATGAAGTGTGAACAAGTTGGTTTGATTGGTGAGCTAATGCAAG GGAAGGAGCTAACAAAGCAGCTTTGTGACCATCTGATTTCATCATCATCATCATCCAATGTAACTAATGAAGTCTTAATT GAGAAAATACTTTTCTCCTATGAGAAAGCACTCACCATGCTGAACTGGAAGGCTAATGTGGAGGACAGTAAGATGAGCAA TGGTACCATGATGGATTCTCATTGTTCTTATGATGGGAGCCCCAGAAGTGAGGTCCTGGACCCAGAGGTTAAGCACAAAA ATGTTTTCAAGAAAAGGTAATGTCAATAAGTTACCAAATTAATGATTCCTTTTCAATTGGGATAAACTTTTAAGGTTCAT GATTCTTATTTCAATCTGGGATTCTTTGAATTTGTGGGATGCAGAAAGACCATGCCTAAGTGGACAAGCCAAGTGAGGGT TTGCTCAGGAACAGCTATTGAGGGGTCTCTGGATGATGGTTATAGCTGGAGAAAATATGGACAGAAGGATATTCTTGGAG CTAAGTTTCCAAGGTATAGGAATACTTTTTACCTTATACATTCTTTTATTGTGAATTTTGTAGTTAGAAGTTTTTCTTTT TATATATACAAGTTTCACCTTTGATATAGGATGGTGTTTTAAGTTATATTTGGATCCCGTGTTAGACATTAGTGTAAACA GACGTTAGCACTAACTTTAAAATAAAAGTAAACTTCAATCACTATAAATTGAGGAAAAAACGCATTTATTTTAGATCTAT TTGGTATCTAAGCATGTACTCACTCCGTTCCTAATTATAAGCTAAAGTTCAAACTTATGTTTTGTCACTAAATATAAGCT AAAGTTGTAAAAGCTAATATTTCTTTCCATACTTACCCTTGCATTTATTGGTTGTTCAATTCCAATATTTTGAAATTAAA ACTCACTTTATTCTCTTTCCTCTTCTCCTACTCACTTAAATATGGTTAAATATGAAAGATTGTACCATTTTTTAAAAAAT CAATGCATCAGTTAAGACTTTCTTAATAAGTGTGATTTTTACAACTTTAGCTTATAATTAGGGACGGAGGGAGTACTTAA TCAGTACTAGAGGTCACTTGGTCAAGTAGCTAATGGACCTGCAAAGAGGGAAATAATCAAATAATCAAATTTAAGGACAA GGTGTCTATTAAAGACTATTATTTAATTTCAACTTATCCAAAGGAAAGGACATAGATGGTTGGATTTAATTCACTGCAAT TCATGCTTTGTGATTAATGCACCATGTGGCATTTACTGAGTCCCCTTTCCACTTGCATAGTGGAAAGATAATAACATGAC CTTTATTATTACCCCTTTTGTCATTCTTTACTTTTGGACACACACTAAAAGTCTGAAAATGACTTTTATCAAAGCTACTA AGAAAATCACATTCGCTGTTCAATAATAGTCCTAATGTTCCCTAAATTAGCAAGAAAAAAGAAAGCATTATGTTTTTAAA TCTTATTATTGTTCTCATAGCTATATGTTTTTCTGACTAAATTTGGTTTTTCAATACAGAGGATATTACAGATGCACTCA CAGAAATGTGCAAGGGTGTCAGGCTACTAAGCAAGTGCAAAAGTCAGATAAAGACCCAACTATGTATGAGATAAACTACA GAGGAAAACACACTTGCACCCAAGCTAGTCATGCAAACAAGGCATCCCCATCAACAAAAGTAAAGGTGGGCTTGGGAGAA AATAAGCACCATATTCTAACCCATCAAAAGAACCAACCACAACAAGAGAAAACAGAACAAACCCAAGAGAGAGTTTTGTC TTTTGGATCAGAACTTGAACTCAAAATTGAGGACTTGGACTACAAGGAGGACACATTCCCATCATTTTGCTTTTCTTCTC CATCAATAGGATCTGAACAAGAGGACAACAACATATTCTCTGAAAACAATTTCATTGAAAGCTTTTCTCCTCCATACATA TCTCCTGCTACATCAGAACTAGTCTTGCATACCTCAGATTTTGATGTCACAGAGATTATTTCAACCCCAACCTCAGTTAC CAATTATGAAATGATAGATTTAGATCTCTTCCTTGACAACATGGATTTCGACACGGTTTTCCCAATCAACACCACAGAAC TTTGCTCTTGATATCAATTGTCCCACTTCCAAGTTAACCGTTATGCTAAGATATCTGTTGGCATCGCTGCAAACCACGTC ATTGCGCTCAAGTGGTATCCAAACACAATACATGGTTCAAGTGCGTGCGGATTGATTGGTGATTTTTGTAGATCCTGACT AGCAACATAAAAGAGGAAGGAAAACTATAGTAATCATATATACAAATACAGTGGAACTTCCCTCTCATGCTAGTTAAGAG AGTTTTCTGGTGCCTATCATGTAATTTGAAAATGATTTGTAAGTTGTATGTAGGTGTATAGTGTTTTGAGGTTTCTCAAT TTAGTTGTAACATAGTTACTTGTTTTCTGTCTTCTTCTGGCTCAAGCAATAGCAAGAGATTGTGAAATTAGTGAGTTTTT ACCACATTTTGCTGTCTAAGATTGTGATGAATGCATTACAGAAAAGACATTTGCAGATTTTGGACACATCCTAATTAAAT CATGCACTCTTTGCCAAATAAAAAGAAAAACTGTACAGTGCCC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0393500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGAGAACATGAAGTGTGAACAAGTTGGTTTGATTGGTGAGCTAATGCAAGGGAAGGAGCTAACAAAGCAGCTTTG TGACCATCTGATTTCATCATCATCATCATCCAATGTAACTAATGAAGTCTTAATTGAGAAAATACTTTTCTCCTATGAGA AAGCACTCACCATGCTGAACTGGAAGGCTAATGTGGAGGACAGTAAGATGAGCAATGGTACCATGATGGATTCTCATTGT TCTTATGATGGGAGCCCCAGAAGTGAGGTCCTGGACCCAGAGGTTAAGCACAAAAATGTTTTCAAGAAAAGAAAGACCAT GCCTAAGTGGACAAGCCAAGTGAGGGTTTGCTCAGGAACAGCTATTGAGGGGTCTCTGGATGATGGTTATAGCTGGAGAA AATATGGACAGAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACTCACAGAAATGTGCAAGGGTGT CAGGCTACTAAGCAAGTGCAAAAGTCAGATAAAGACCCAACTATGTATGAGATAAACTACAGAGGAAAACACACTTGCAC CCAAGCTAGTCATGCAAACAAGGCATCCCCATCAACAAAAGTAAAGGTGGGCTTGGGAGAAAATAAGCACCATATTCTAA CCCATCAAAAGAACCAACCACAACAAGAGAAAACAGAACAAACCCAAGAGAGAGTTTTGTCTTTTGGATCAGAACTTGAA CTCAAAATTGAGGACTTGGACTACAAGGAGGACACATTCCCATCATTTTGCTTTTCTTCTCCATCAATAGGATCTGAACA AGAGGACAACAACATATTCTCTGAAAACAATTTCATTGAAAGCTTTTCTCCTCCATACATATCTCCTGCTACATCAGAAC TAGTCTTGCATACCTCAGATTTTGATGTCACAGAGATTATTTCAACCCCAACCTCAGTTACCAATTATGAAATGATAGAT TTAGATCTCTTCCTTGACAACATGGATTTCGACACGGTTTTCCCAATCAACACCACAGAACTTTGCTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0393500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEENMKCEQVGLIGELMQGKELTKQLCDHLISSSSSSNVTNEVLIEKILFSYEKALTMLNWKANVEDSKMSNGTMMDSHC SYDGSPRSEVLDPEVKHKNVFKKRKTMPKWTSQVRVCSGTAIEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGC QATKQVQKSDKDPTMYEINYRGKHTCTQASHANKASPSTKVKVGLGENKHHILTHQKNQPQQEKTEQTQERVLSFGSELE LKIEDLDYKEDTFPSFCFSSPSIGSEQEDNNIFSENNFIESFSPPYISPATSELVLHTSDFDVTEIISTPTSVTNYEMID LDLFLDNMDFDTVFPINTTELCS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31282
11 341 331 5.9E-112 –
PANTHER
PTHR31282:SF26
11 341 331 5.9E-112 –
Gene3D
G3DSA:2.20.25.80
111 190 80 3.1E-27
IPR036576
ProSiteProfiles
PS50811
121 184 64 22.32
IPR003657
SUPERFAMILY
SSF118290
125 188 64 1.09E-24
IPR036576
SMART
SM00774
126 188 63 1.3E-38
IPR003657
Pfam
PF03106
127 186 60 3.6E-26
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0393500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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