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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0394400 |
Transcript ID | LotjaGi3g1v0394400.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | helicase with zinc finger protein; TAIR: AT2G46420.1 helicase with zinc finger protein; Swiss-Prot: sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain; TrEMBL-Plants: tr|A0A0L9T4H0|A0A0L9T4H0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0394400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79422607..79426363) extracted from Lotus japonicus Gifu genome v1.2.
TTAAATTCTCATGTTATTTCTAGTTGTCTAATACTCAGTAATGCTTTAACGAGCAAACTATTTTTATTGAATACTCTAAC AAATAAATGATTTTGAACCTGCTGTATCCATCCTTGCTTTCTACTTTGATGGTGATGCGAACTCAGCCTGATCATCCAGA TTTGTTTTATTACACTTTTTTGCTTCTTGCATATATTGTAATTATATTAGATTTACTTTTCTGGATTCATAGAGCACGGA AGAATTACAATCGTCAACTCAAGCTTCTCATGAGCCCAAGATTGAACAACCAAACAATCATACGACTGATGCTCCTGTCA CAGACTCAGGTTCAGCTTCTGCTTCAAGCAATGATAGCAAAAAGGTTTCACGACAGGATATTGAGCTGGTAAGGATATAT AGTGTTTCCTAAACATCTGACTAGTTTCCTACAATTCTCTACTTTTCCACTTTCTCCCTACATCGTGTGGAATGAATATT TACAGGTCCAGAAATTTTAAAGAAACTAGTCTGAACTAATCTGTTTCTTTTATTATTCAAAAACCTTTTGCAGGTCCAGA ATCTAATAGAAAGGTGTCTGCAATTATATATGAATAAAGATGAGGTGGTTAAAACGCTACTGACTCGGGCAAAGATAGAT CCTGGATTTACCACTCTTGGTAGGCATCTTGAAGTCTGTGTCAGCCCATTTATGTGTTGCATTCTAATGATTAATGACCT GTTGTATATGCTTTTCATTTAAAATCTTTACATCCTTATCATTTTCAATGTTCTATTAAATAAAGTTGTTATTTGGTCTA CATGTTGATTACATGGAAATCAGCAAAACCTGATAGTTGAGACCCATTGGTTTTAAAAACCACGACATTGCTTGCATTAT TATATAACTTCCTTTAAAAGTGGAAATAAACTCATTTCACATTTTTGTAATCGATGTTTTTTTTATTCAGTGTGGCAGAA GTTGGAAGAAGAGAATGCTGATTTCTTCAGGGCCTACTATATTAGGCTAAAATTGAAAAAGCAAATACTTCTATTCAATC ATTTACTGGAGCATCAGTATCATCTGATGAAGTCTCCCATGCCTGCAAAGGTTCCATTGGCTCCAATGCAGAATGGAATC CATCCAATGCCTAGTATATTCTTAACCTCTCATCTATGATCTATTTGTGTGTGTGTAAAATTTGAACCCAAATTATCTTC ACTTCACCTCTTTGTATGGACAAAAAATGAACTTATAGTTAAGACTTAAGGAATGACACTTATATTTCACATCTTATGTT ATGCAATAATTCTCACTGCATTCTTAACTTCATGGCCAACAATAAGGCAAGGAACAAACCATGTCTCATGGAAGAGGTCT TGATTGGTACTTGCTTGCTTCCCTTTTATGAAAAGGAAAATAGTGAGAAGACTCTCAGGGTTCTTAGAAGTTCTTAAAAA CCTTTTAGAGGCTTCATAACTTGTAGTATCTATACGTATAATGAGCAGCCCAATGAGTATTTAAGCTAAATGCAGGGTAT CTGCTAATCTTTTATGATTTATGAGCTTACTATTCTCAACTCATGAAGATTTATTTTGGATACTTGAGAAATGGCCAATA TGGGTGCTAGTACAAGATTTTCGTATGACTATGTTACTGGAAACTTTCCTTTTCCAGACTGGCTGCAAAAGCTGGGAGCG TCAGTAGTTGTTAATTGTTATGTCTTAGTGTAGTGTATCTTTTTGCTGGAGATTGTTGTTAGTTAGTCAATTCATCGCGG GCTTTGTGCTGCCCAAAATTAAGGAAACTTTTTGCATATTTCTTGGTTGAGTGTTGATTTTTATGGTTTCCTAGGGTTTA ATCTGCTATATTAACTCTTGTAAATACTGTTTAGCCTGAGAATATTTGAGCCTTTTTCATGGTCTTTTTGTGTGGATTGC TGAATACCTTTCAATTTGAAAAGCTGATGGCATAAATTATATGCATAAACTTGTGCTTTATATTTTTCTTGTTTTCCTGC GCTATTCTTTAACACCATCTGTTTGCAGTGCAGTCAACAACCTGCCTATCGGATACCCAGTTCTACAGCAACATCCCATT GCAGCTGCAGGTCAACCTCATATTGACCCCATGGGTTGTGGCATGTCAAGTTGTCATGTGGTTAACGGAGTCCCTGCACC GAGCAATTTTCATCCCATTCGGATGAATTCTGGGAATGAGTGAGAACTTCTCCAACTACATATAATTCTATTATGTGCAT TCATACATTGAACGATATTGCGTAAAGATCATTTCTGGATGATTTTGCATAGCCAGCTTTTGTATTTTAGCTTTCTGAAA TGTCTAAATGGGTGTTTTGTGGTTAAGAAGCTGCAGTTGATTTCTCCAACAGTTTAGTAGTGTGACTGATAAAATGTGTT TCTGACTCTATCAAAATGGTCCATGGTCATGTTTGTATATATTTAATTTTCTTGCTAGGGTTTGCCATGCAACATCCAGT AAAAGGATTTTTTCATGAAACTATGTCCCCGAATTGTGTTTATACACTCTTATGCACATTATATACCCAGATTGTTGTGG TGGTCATGCTTTGGTTGAATCTGGAATACCTTTTCGTTTCTTTCTTTTAAAAGTACTTTGTCTACTTTTGTTCTTGTTGA AGCATGGTGATGGACCACAGCGCTCCTGATGCGGCTCCAACGATTCCACCAAATGGTGTAATGTCATCCGAAATGCCAGT GAGTCCGACTTCAGCATCCAGTGGTCATTTCCCCTTCACTGCATCAGAAATATCAGGAATGGGCACAGATGCATCAGCTC TTGATACCGCATTTACATCTGATGTGGCAAGTTCAGGAGGACTACAACTTGCACCAGATGGCAGCAACGGAATTTCTAGA TCGCTCGATCAAATTCAGTGGAATTTTAGCCTATCTGATCTGACAGCAGATTTGCCAAACTTGGGAGGTAATTTCTTAGT TGACTCTCTTATCTTATCCACCTTTTAATATGCAGTTTAGTTACATGTCTTATAGAAGTGAAGTTATTTGAGATGTACAA CTTATTCTATCCCTTATATGCCCAAAGTAATCTTGTATATTAAGAAAGGTGAACCTGTTGGAGTCTAAACTAAAGTTTCA ACTAGTGCAGTGAAAAGTCCTTCCCAAAAGATGGAAAAAGCATTTAATGTATTGGATTATGAGTAAAATTAGACTTTGAA CTGTTCTGTTTCCTTATCTATGGAGAACTGTTAGTGTGCAAATATTCTTTTAGTTATCATAAACATATCTACTATTTTTG CAGCACCTTTAAACAATTTGCTATTGATGACTTAAGTGCTATCAAATCGCAGTAAATGATGCATAAACATTTTAGTTATT GCTAAATGCAGTCAAGGATTATAGTTAATATTTTACGTGTCCATCATCTCTTCATATTTTATATGCTCATCATTGTGGGC ATTTTCATGCATTTTTAATGAATTATGTTGAATTTTATGCAGACCTAGGAGCTCTTGGAAACTATCCTGGCTCACCATTT TTGCCATCTGATTCTGACATGTTGCTCGAGTCACCAGATCAACAGGATATAGGTAATGTTAAATACTATCCTGGCTCACC ATTTTTGTCATCTAATTTTGTTATTGCTTGTAGTTTTGAGGTTCAGTTTATGTTTGATTTAACAAAACCTTTTTTTTTTT TTTTTTTAATTTCAGTGGATGATTTCTTTGCTAACTCTGAGCCACAATGTTCTCAATCAGATGAGGAGAAAACTTAA
CDS sequence (LotjaGi3g1v0394400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAAAGATGAGGTGGTTAAAACGCTACTGACTCGGGCAAAGATAGATCCTGGATTTACCACTCTTGTGTGGCAGAA GTTGGAAGAAGAGAATGCTGATTTCTTCAGGGCCTACTATATTAGGCTAAAATTGAAAAAGCAAATACTTCTATTCAATC ATTTACTGGAGCATCAGTATCATCTGATGAAGTCTCCCATGCCTGCAAAGGTTCCATTGGCTCCAATGCAGAATGGAATC CATCCAATGCCTATCAACAACCTGCCTATCGGATACCCAGTTCTACAGCAACATCCCATTGCAGCTGCAGGTCAACCTCA TATTGACCCCATGGGTTGTGGCATGTCAAGTTGTCATGTGGTTAACGGAGTCCCTGCACCGAGCAATTTTCATCCCATTC GGATGAATTCTGGGAATGACATGGTGATGGACCACAGCGCTCCTGATGCGGCTCCAACGATTCCACCAAATGGTGTAATG TCATCCGAAATGCCAGTGAGTCCGACTTCAGCATCCAGTGGTCATTTCCCCTTCACTGCATCAGAAATATCAGGAATGGG CACAGATGCATCAGCTCTTGATACCGCATTTACATCTGATGTGGCAAGTTCAGGAGGACTACAACTTGCACCAGATGGCA GCAACGGAATTTCTAGATCGCTCGATCAAATTCAGTGGAATTTTAGCCTATCTGATCTGACAGCAGATTTGCCAAACTTG GGAGACCTAGGAGCTCTTGGAAACTATCCTGGCTCACCATTTTTGCCATCTGATTCTGACATGTTGCTCGAGTCACCAGA TCAACAGGATATAGTGGATGATTTCTTTGCTAACTCTGAGCCACAATGTTCTCAATCAGATGAGGAGAAAACTTAA
Protein sequence (LotjaGi3g1v0394400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKDEVVKTLLTRAKIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNHLLEHQYHLMKSPMPAKVPLAPMQNGI HPMPINNLPIGYPVLQQHPIAAAGQPHIDPMGCGMSSCHVVNGVPAPSNFHPIRMNSGNDMVMDHSAPDAAPTIPPNGVM SSEMPVSPTSASSGHFPFTASEISGMGTDASALDTAFTSDVASSGGLQLAPDGSNGISRSLDQIQWNFSLSDLTADLPNL GDLGALGNYPGSPFLPSDSDMLLESPDQQDIVDDFFANSEPQCSQSDEEKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 288 | 288 | 8.7E-154 | – | |
TIGRFAM | 1 | 42 | 42 | 7.1E-19 | ||
PANTHER | 1 | 288 | 288 | 8.7E-154 | ||
Pfam | 1 | 40 | 40 | 6.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0394400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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