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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0394400 |
| Transcript ID | LotjaGi3g1v0394400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | helicase with zinc finger protein; TAIR: AT2G46420.1 helicase with zinc finger protein; Swiss-Prot: sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain; TrEMBL-Plants: tr|A0A0L9T4H0|A0A0L9T4H0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0394400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79422723..79426368) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTACTTTGATGGTGATGCGAACTCAGCCTGATCATCCAGATTTGTTTTATTACACTTTTTTGCTTCTTGCATATAT TGTAATTATATTAGATTTACTTTTCTGGATTCATAGAGCACGGAAGAATTACAATCGTCAACTCAAGCTTCTCATGAGCC CAAGATTGAACAACCAAACAATCATACGACTGATGCTCCTGTCACAGACTCAGGTTCAGCTTCTGCTTCAAGCAATGATA GCAAAAAGGTTTCACGACAGGATATTGAGCTGGTAAGGATATATAGTGTTTCCTAAACATCTGACTAGTTTCCTACAATT CTCTACTTTTCCACTTTCTCCCTACATCGTGTGGAATGAATATTTACAGGTCCAGAAATTTTAAAGAAACTAGTCTGAAC TAATCTGTTTCTTTTATTATTCAAAAACCTTTTGCAGGTCCAGAATCTAATAGAAAGGTGTCTGCAATTATATATGAATA AAGATGAGGTGGTTAAAACGCTACTGACTCGGGCAAAGATAGATCCTGGATTTACCACTCTTGGTAGGCATCTTGAAGTC TGTGTCAGCCCATTTATGTGTTGCATTCTAATGATTAATGACCTGTTGTATATGCTTTTCATTTAAAATCTTTACATCCT TATCATTTTCAATGTTCTATTAAATAAAGTTGTTATTTGGTCTACATGTTGATTACATGGAAATCAGCAAAACCTGATAG TTGAGACCCATTGGTTTTAAAAACCACGACATTGCTTGCATTATTATATAACTTCCTTTAAAAGTGGAAATAAACTCATT TCACATTTTTGTAATCGATGTTTTTTTTATTCAGTGTGGCAGAAGTTGGAAGAAGAGAATGCTGATTTCTTCAGGGCCTA CTATATTAGGCTAAAATTGAAAAAGCAAATACTTCTATTCAATCATTTACTGGAGCATCAGTATCATCTGATGAAGTCTC CCATGCCTGCAAAGGTTCCATTGGCTCCAATGCAGAATGGAATCCATCCAATGCCTAGTATATTCTTAACCTCTCATCTA TGATCTATTTGTGTGTGTGTAAAATTTGAACCCAAATTATCTTCACTTCACCTCTTTGTATGGACAAAAAATGAACTTAT AGTTAAGACTTAAGGAATGACACTTATATTTCACATCTTATGTTATGCAATAATTCTCACTGCATTCTTAACTTCATGGC CAACAATAAGGCAAGGAACAAACCATGTCTCATGGAAGAGGTCTTGATTGGTACTTGCTTGCTTCCCTTTTATGAAAAGG AAAATAGTGAGAAGACTCTCAGGGTTCTTAGAAGTTCTTAAAAACCTTTTAGAGGCTTCATAACTTGTAGTATCTATACG TATAATGAGCAGCCCAATGAGTATTTAAGCTAAATGCAGGGTATCTGCTAATCTTTTATGATTTATGAGCTTACTATTCT CAACTCATGAAGATTTATTTTGGATACTTGAGAAATGGCCAATATGGGTGCTAGTACAAGATTTTCGTATGACTATGTTA CTGGAAACTTTCCTTTTCCAGACTGGCTGCAAAAGCTGGGAGCGTCAGTAGTTGTTAATTGTTATGTCTTAGTGTAGTGT ATCTTTTTGCTGGAGATTGTTGTTAGTTAGTCAATTCATCGCGGGCTTTGTGCTGCCCAAAATTAAGGAAACTTTTTGCA TATTTCTTGGTTGAGTGTTGATTTTTATGGTTTCCTAGGGTTTAATCTGCTATATTAACTCTTGTAAATACTGTTTAGCC TGAGAATATTTGAGCCTTTTTCATGGTCTTTTTGTGTGGATTGCTGAATACCTTTCAATTTGAAAAGCTGATGGCATAAA TTATATGCATAAACTTGTGCTTTATATTTTTCTTGTTTTCCTGCGCTATTCTTTAACACCATCTGTTTGCAGTGCAGTCA ACAACCTGCCTATCGGATACCCAGTTCTACAGCAACATCCCATTGCAGCTGCAGGTCAACCTCATATTGACCCCATGGGT TGTGGCATGTCAAGTTGTCATGTGGTTAACGGAGTCCCTGCACCGAGCAATTTTCATCCCATTCGGATGAATTCTGGGAA TGAGTGAGAACTTCTCCAACTACATATAATTCTATTATGTGCATTCATACATTGAACGATATTGCGTAAAGATCATTTCT GGATGATTTTGCATAGCCAGCTTTTGTATTTTAGCTTTCTGAAATGTCTAAATGGGTGTTTTGTGGTTAAGAAGCTGCAG TTGATTTCTCCAACAGTTTAGTAGTGTGACTGATAAAATGTGTTTCTGACTCTATCAAAATGGTCCATGGTCATGTTTGT ATATATTTAATTTTCTTGCTAGGGTTTGCCATGCAACATCCAGTAAAAGGATTTTTTCATGAAACTATGTCCCCGAATTG TGTTTATACACTCTTATGCACATTATATACCCAGATTGTTGTGGTGGTCATGCTTTGGTTGAATCTGGAATACCTTTTCG TTTCTTTCTTTTAAAAGTACTTTGTCTACTTTTGTTCTTGTTGAAGCATGGTGATGGACCACAGCGCTCCTGATGCGGCT CCAACGATTCCACCAAATGGTGTAATGTCATCCGAAATGCCAGTGAGTCCGACTTCAGCATCCAGTGGTCATTTCCCCTT CACTGCATCAGAAATATCAGGAATGGGCACAGATGCATCAGCTCTTGATACCGCATTTACATCTGATGTGGCAAGTTCAG GAGGACTACAACTTGCACCAGATGGCAGCAACGGAATTTCTAGATCGCTCGATCAAATTCAGTGGAATTTTAGCCTATCT GATCTGACAGCAGATTTGCCAAACTTGGGAGGTAATTTCTTAGTTGACTCTCTTATCTTATCCACCTTTTAATATGCAGT TTAGTTACATGTCTTATAGAAGTGAAGTTATTTGAGATGTACAACTTATTCTATCCCTTATATGCCCAAAGTAATCTTGT ATATTAAGAAAGGTGAACCTGTTGGAGTCTAAACTAAAGTTTCAACTAGTGCAGTGAAAAGTCCTTCCCAAAAGATGGAA AAAGCATTTAATGTATTGGATTATGAGTAAAATTAGACTTTGAACTGTTCTGTTTCCTTATCTATGGAGAACTGTTAGTG TGCAAATATTCTTTTAGTTATCATAAACATATCTACTATTTTTGCAGCACCTTTAAACAATTTGCTATTGATGACTTAAG TGCTATCAAATCGCAGTAAATGATGCATAAACATTTTAGTTATTGCTAAATGCAGTCAAGGATTATAGTTAATATTTTAC GTGTCCATCATCTCTTCATATTTTATATGCTCATCATTGTGGGCATTTTCATGCATTTTTAATGAATTATGTTGAATTTT ATGCAGACCTAGGAGCTCTTGGAAACTATCCTGGCTCACCATTTTTGCCATCTGATTCTGACATGTTGCTCGAGTCACCA GATCAACAGGATATAGGTAATGTTAAATACTATCCTGGCTCACCATTTTTGTCATCTAATTTTGTTATTGCTTGTAGTTT TGAGGTTCAGTTTATGTTTGATTTAACAAAACCTTTTTTTTTTTTTTTTTTAATTTCAGTGGATGATTTCTTTGCTAACT CTGAGCCACAATGTTCTCAATCAGATGAGGAGAAAACTTAAGGTGA
CDS sequence (LotjaGi3g1v0394400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACGGAAGAATTACAATCGTCAACTCAAGCTTCTCATGAGCCCAAGATTGAACAACCAAACAATCATACGACTGA TGCTCCTGTCACAGACTCAGGTTCAGCTTCTGCTTCAAGCAATGATAGCAAAAAGGTTTCACGACAGGATATTGAGCTGG TCCAGAATCTAATAGAAAGGTGTCTGCAATTATATATGAATAAAGATGAGGTGGTTAAAACGCTACTGACTCGGGCAAAG ATAGATCCTGGATTTACCACTCTTGTGTGGCAGAAGTTGGAAGAAGAGAATGCTGATTTCTTCAGGGCCTACTATATTAG GCTAAAATTGAAAAAGCAAATACTTCTATTCAATCATTTACTGGAGCATCAGTATCATCTGATGAAGTCTCCCATGCCTG CAAAGGTTCCATTGGCTCCAATGCAGAATGGAATCCATCCAATGCCTATCAACAACCTGCCTATCGGATACCCAGTTCTA CAGCAACATCCCATTGCAGCTGCAGGTCAACCTCATATTGACCCCATGGGTTGTGGCATGTCAAGTTGTCATGTGGTTAA CGGAGTCCCTGCACCGAGCAATTTTCATCCCATTCGGATGAATTCTGGGAATGACATGGTGATGGACCACAGCGCTCCTG ATGCGGCTCCAACGATTCCACCAAATGGTGTAATGTCATCCGAAATGCCAGTGAGTCCGACTTCAGCATCCAGTGGTCAT TTCCCCTTCACTGCATCAGAAATATCAGGAATGGGCACAGATGCATCAGCTCTTGATACCGCATTTACATCTGATGTGGC AAGTTCAGGAGGACTACAACTTGCACCAGATGGCAGCAACGGAATTTCTAGATCGCTCGATCAAATTCAGTGGAATTTTA GCCTATCTGATCTGACAGCAGATTTGCCAAACTTGGGAGACCTAGGAGCTCTTGGAAACTATCCTGGCTCACCATTTTTG CCATCTGATTCTGACATGTTGCTCGAGTCACCAGATCAACAGGATATAGTGGATGATTTCTTTGCTAACTCTGAGCCACA ATGTTCTCAATCAGATGAGGAGAAAACTTAA
Protein sequence (LotjaGi3g1v0394400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTEELQSSTQASHEPKIEQPNNHTTDAPVTDSGSASASSNDSKKVSRQDIELVQNLIERCLQLYMNKDEVVKTLLTRAK IDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNHLLEHQYHLMKSPMPAKVPLAPMQNGIHPMPINNLPIGYPVL QQHPIAAAGQPHIDPMGCGMSSCHVVNGVPAPSNFHPIRMNSGNDMVMDHSAPDAAPTIPPNGVMSSEMPVSPTSASSGH FPFTASEISGMGTDASALDTAFTSDVASSGGLQLAPDGSNGISRSLDQIQWNFSLSDLTADLPNLGDLGALGNYPGSPFL PSDSDMLLESPDQQDIVDDFFANSEPQCSQSDEEKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 45 | 45 | - | – | |
| MobiDBLite | 1 | 44 | 44 | - | – | |
| PANTHER | 2 | 353 | 352 | 2.1E-185 | – | |
| PANTHER | 2 | 353 | 352 | 2.1E-185 | ||
| TIGRFAM | 51 | 107 | 57 | 2.1E-29 | ||
| Pfam | 54 | 105 | 52 | 8.6E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0394400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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