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LotjaGi3g1v0396800.2

Overview

Field Value
Gene ID LotjaGi3g1v0396800
Transcript ID LotjaGi3g1v0396800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description ethylene-responsive transcription factor; TAIR: AT1G01250.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q1ECI2|ERF23_ARATH Ethylene-responsive transcription factor ERF023; TrEMBL-Plants: tr|I1KHU6|I1KHU6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0396800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:79784790..79786149) extracted from Lotus japonicus Gifu genome v1.2.

GGGACTGAAAATTAACACGCCAATGCCATCTTTAATTGCATGCTGGTGGTCCTTTACGTAGGAAAATAAAATCAGCAACT TTTCATCCTCTCAAATACTTATTTCTCAAATACTTATTTAGTAGAGCATGACATGTCTCGTACTTCAGAAGTTGCAGGTT TGAATTCTCATGTTTATATTTAAGGTGATGTAAATATTTATTAAACTCGACAATTTTCTCTACTTTGAAATCAACATTAT TCAATCGCCTTAAATTTTTTTAACCTGAATAGAGAAAAACTTTTGACCCTCTCTCTCTATATAGGGGTAGTTAGGTAATT TCACACTGCTTTGATGAGAAGCTTATATTATAAGGCTAGAAGTTAATTCAGAGACAAAAAGAAGCGTTGCTCATACAAAT TTTGTGAATGGAGCATCATTTGCAATGTGCTGCAGAAGATGACGTGGCAGAAGCAGCGGTGACCACCGCCGTGGAGAAAT CCGACAGCGTGCGCGGCGGAACGCGCCACCCAGTCTACCGCGGCGTCCGGAAGCGGCGATGGGGCAAATGGGTGTCTGAA ATTCGGGAGCCGAGGAAGAAGTCTCGCATATGGCTGGGGTCGTTTCCGTTGCCGGAGATGGCGGCGAAGGCCTACGACGT CGCCGCCTACTGCCTGAAGGGACGCAAGGCGCAGCTCAACTTCCCCAACGAGGTTCACCGCCTTCCGCCGCTGCCTCCGC CGTCTTCTTGCACTGCAAGGGACATCCAGGCGGCGGCGGCCAAGGCAGCTCGCATGATGGCCAAGAGAGCCTCCGCCGTG TCGCCGGAGAAGAGCGTTGTTACCTCGGATAGCGACGGCAGCGTAGCAGAGGACTTCTGGGGTGAGATAGAGCTGCCAGA GCTCATGAACGGCAGCTGGTGGAGTTCTTCCGGTGACATCACGGCGTTGCCGGAGGTTGAGGTGCCACCGCAGCAACCTT TCACGGCGTGCCTGTAATGTGTATTAATGGTTATTTATGCTAGCTGTGGTTTGGTTAGTGTACATTAATTGCTTATATAA CCTACTCTATGTTTTCTGATCAAAATATTCATTATGACTGAGATTATCATTTATCAGTACTAATAGCAATTGTTTTACTC ACTATTATTGTGCTATAATTAACTCAAAAACGCATACACGTGTCCCGTGAACTTATTTCTTTTCTTATTTCAAACTAACT TATGTCACTTTGTAGCTTCATGTGATCATGTCTAATCAATCATGAATTCACATCACATTAGTTTATTTATTTATTTATTT ATTCACACTCTCATCTTATTTACACGTTTACTTTTTTATTTATATATCTTCTTTTTAATCTATCACTCATCACATTTTCT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0396800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCATCATTTGCAATGTGCTGCAGAAGATGACGTGGCAGAAGCAGCGGTGACCACCGCCGTGGAGAAATCCGACAG CGTGCGCGGCGGAACGCGCCACCCAGTCTACCGCGGCGTCCGGAAGCGGCGATGGGGCAAATGGGTGTCTGAAATTCGGG AGCCGAGGAAGAAGTCTCGCATATGGCTGGGGTCGTTTCCGTTGCCGGAGATGGCGGCGAAGGCCTACGACGTCGCCGCC TACTGCCTGAAGGGACGCAAGGCGCAGCTCAACTTCCCCAACGAGGTTCACCGCCTTCCGCCGCTGCCTCCGCCGTCTTC TTGCACTGCAAGGGACATCCAGGCGGCGGCGGCCAAGGCAGCTCGCATGATGGCCAAGAGAGCCTCCGCCGTGTCGCCGG AGAAGAGCGTTGTTACCTCGGATAGCGACGGCAGCGTAGCAGAGGACTTCTGGGGTGAGATAGAGCTGCCAGAGCTCATG AACGGCAGCTGGTGGAGTTCTTCCGGTGACATCACGGCGTTGCCGGAGGTTGAGGTGCCACCGCAGCAACCTTTCACGGC GTGCCTGTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0396800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEHHLQCAAEDDVAEAAVTTAVEKSDSVRGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPLPEMAAKAYDVAA YCLKGRKAQLNFPNEVHRLPPLPPPSSCTARDIQAAAAKAARMMAKRASAVSPEKSVVTSDSDGSVAEDFWGEIELPELM NGSWWSSSGDITALPEVEVPPQQPFTACL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31985:SF5
22 137 116 3.5E-60 –
PANTHER
PTHR31985
22 137 116 3.5E-60 –
Pfam
PF00847
35 85 51 2.3E-12
IPR001471
SUPERFAMILY
SSF54171
36 94 59 7.85E-21
IPR016177
SMART
SM00380
36 99 64 1.7E-35
IPR001471
ProSiteProfiles
PS51032
36 93 58 23.42
IPR001471
Gene3D
G3DSA:3.30.730.10
36 96 61 2.1E-28
IPR036955
CDD
cd00018
37 94 58 8.36965E-31
IPR001471
PRINTS
PR00367
37 48 12 1.4E-12
IPR001471
PRINTS
PR00367
75 95 21 1.4E-12
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0396800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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