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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0398700 |
| Transcript ID | LotjaGi3g1v0398700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ORMDL family protein; TAIR: AT5G42000.1 ORMDL family protein; Swiss-Prot: sp|Q921I0|ORML1_MOUSE ORM1-like protein 1; TrEMBL-Plants: tr|I3SFQ3|I3SFQ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0398700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80058878..80065945) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAAAACAAAAATTCGAAAATTATCCATGAAAAACGATGTCGATATTCTGGTCTATCCATGAAAAATTGATATTCATT GTAAAAATTTGTTTATTTCACAATAAATACATTTACCGATTTTAAGTGCTATCTATCATTTTCATTATTCAATTCCTCCA CACGCTAGAGAGAGAGAGAGAGAAAAAGAGAGGTTGTGTTGTGTTTCTGGGTTTTGGAATTTCCATTCAATTCAACAACA ACCACCACCACCACCACCACCGTCCACCACCGCCATCATCATCATCGAAGTTCGATCGATCGTGGCGCATCTATCAATCA ATCAACAGGAGGGTTCCTTTGTTTATTGTTTTATGGCAAATCTGTACGTGAAGGCGGTGCCACCAGCGGATCTGAACAGG AACACGGAGTGGTTCACGTACCCTGGCGTTTGGACCACCTACATCCTCATCCTCTTCTTCTCATGGATCCTCGTTCTCTC CGTCTTCAGTTGCTCCCCTGGCATCGCTTGGACCATCGTTAATCTCGTCCATTTCCTTGTATCTTCCTTCTTCCTTTCCT TCCTTTACTTTTTCCTGTTTTTCCTTTACATTTCAAATCAGATATCACAATACGATTGATTCAAATTGGATTTGATTTCT GGGTATTTGATTTGTTACCTTGTTGATTTGCCTGATTTACCCCTCATGATAACCCGTGTGGAAACTAGAGCCTTTTAGGG TTTGTATCTGTTGTTTGTAATTCCTTGATAAATGGGGGGTAGGATTGTTTTGGTTTTTGGTTTTGGGTAGGTACTTGGGT TTTTGTCTCATTGTACTTAATTGCTTAATTAATGGTGAATAGTTTAGGTTTTATATTGTTTAGGTTTCTTTCTTAATACT TAGAAATGTATAAAGCAAGGGAGGGTTTGTGTATGTTCAACCCATTTGGAAACATTGCAGTATAAGGATTATTTTTGGTT TTGTATGTGGTGTTCGTTATTTTTTGGTAAATGGGTGTCGGCGTCGCAGTTATATTGTTTTGGGTTTTGTTTAGTGAATG GTAAATTGTTCATAGATGGGGCAATTTTATAAGATAAGAGGCTGAATGTAATTAAATTGTGCTGCGCTTGGAGAGGTTGA GATGTTAATTTATTGAGTCATCATACTCCATAATCATTTATATCAGCCTTGCCGCTTCTTGTGGCTTGATACGTGGTAAG AAGTTCAGGATTCAAGTTTGTGGTTTCATTCTTGATATTCATGCAGAGAGGGACAGAAAGAGGGGGAGGGGGGGGGGGTA AAATTCTTATAAGACATATGTAAGTTAGAGGTCCGTCTGTCATCTCACCAAATCATAGCATATGATTGGAAGTGAACTAT ACTCTTGAATCTTCTTTGCGTTTCTCTTGTCAAGGGTAGAGAGTGACCTTCATACCTAGTTTATTTTCCTAGCAATTCGG TATTCTCCTATGTACATTAACCTATATATATAATTCGAAAAAAAGTTAACATTATCCATTAATCTTTCTCGTATTGGCAC TTGATCTTTCTCTTTTATTACTCACATTTACTTTCGTTTTCTTTTGATAAAAAATAAACCAAGCTCATTAATAGCCATTG CTGATGATAAAGCTGAAGAAAAATAATTATCTGTTAGCGTATTAGACCGTTGACTTCCCATTCCTGTCTTCATGGCTCCA TCAAGTGTACTTTGTTCTATAATCTATCATAAAAAAGTTACCTTATCTGGTGTACCCTAATCATATCCCCACATATTACT TTTGTACTTCCCCTCCTTCTTAGTCTCTTCCTACACCATTTTCACCTGTTTCAGTCTGTTTGTATACACTACTCACTTTG AGATGTCCAATATCTCCTGGGGGCCTCTATGCTTATTGATGACCGTGATGATGATTATCTTCCAGTCTATCCTTAGCAGG ATGTTTAGATTGGCAAGGAGAATGAATGCCGCTGCTTTTTATATTGTTCAAAGCAGGGGGGGGGGTTGTTCAAGAAAGCG TTGCAGAACAGGGGATTGTTAAGATCTTTCCCTATTCTAGATTCAATTGTTTCTGTGATTCTTGAACTAGTTGTGCTGTA TTTGCTGTAATTTTCACAGTTCCCCTCCTTTATGAGATGTTCAAACTTTTCTTTTTTGCTTCTCCTCGTTTTAATTTTAG ATGTACTCCAATTCAAGATTCAGGTGTCTAAGAGCCATGTTTGTCTAAGAGTGTTTGTTTCTCATTTTTCCTTTTATGGG ATTGGTGAAACATTAAAGCAAGGCAATCCGCGTTTACTTATGTATCATTTGGTGAAGAAATATTTTCAGTATTCATGTAG TATCTACTCCCTCCATAAAATAATTCCATTTAATTGGACAGTTCCCTTTTATTATTTTCTTCAAAATTATCAAATGAGAC CATTAACAATACAATGCCACATCCCATGATTTTAGGGAGGGAAAAACATACTACTGAACCACTTGGTGAGGTGATGGGCA ACAGAGATTTTTTCTTCAAAATTGTTCGATTAGATAAAACTATAAATTAATATCTTCTGTCAATTTTTTATTAATGAAGC TTAGGATAAATTGGTCTATCTACATGGCTTGATTCATTATGTTGTGTCTATCAGGTAACATATCACTTTTTCCACTGGAA GAAAGGAACTCCATTTGCAGAGGACCAAGGGATCTACAATAGATTGACATGGTGGGAGCAGATAGACAATGGAAAGCAGC TCACTCGTAACAGGAAGTTTCTAACAGTTGTTCCTTTGGTGCTGTAAGTTCTCTAATTTGCATGCCAGTGTTTTTACATT TAAAGTTGTCTATATGCGTGTGCGCTCGGGGGCATTTGCGCGTGTCCAGTCTTTTTGTAAAAACACGAATTGGTTCACAT TGATATCGTCTATACTGATGCAGACAAATGTATCTGTATATGGGTTGTACTTTAAATGATTTTAAAGTGGAAGTTGTAAA TCAATTGGTGGTCAATACTAAATAGGGGTGTCAATACTCTTAATAGGTTCGAATAGAGCCGCGAACCTGACCCAATGCCA TAAAAGGTACTGGTTTTATAGGCCATTTTCCCTGTTATTTGTCTTTTGAATGGGCTGCAGGCGTGGGAATCTTTTAAAGC GTTCTGAAGTTAGTAGTATCCATATACTCTCTCTCCCCTTGTGCATGTGTGTGTGTGTATTTTATGTCCTAGAAATTGGC TATTCAATATTCATGGATATCCTAGAGTTTCATTGGAAGTCTAGTGGAGAAGTATTGGTATTAGGTGTATATATAGTTTA TGAAGCCCAAAAAACTTCCATGTTGGCTAATAGTATTTAAGTTAGCTGAAAATGCAGAGATTTCTATTATAATATTTGAG ACATGATCTGTTAAGTTTTATCTTTTTTTTTTCTTTGTGAAACTACGCGGGTTCGTAACTTAAATTTTGAGGATTAAGTG CTTAGTTTTTTCAGGAAATTGTTTTGCTAGAAGAAACATTGTCAAATTTTAAATAAAAAAGAAAAGAATTTGATTCCTCT GAAGTAAAGGGTGTACAATAGGAGACCTTGAGAACTTGGGTGTGGGCCCAACTCTATCCCAACAGCTAGTTTAGGATGAC ATTGTTCTACCCTTCATAAGACTGGATTGACTTCATCAATTTCTCCTAGGATATCATTAGATCCAGATTGGCTTCATCAA TTTTCATAGAAAGATTGGTGTATTGATTTTTTCCTAGGACAACTGCAGGCCACGTTGAATCTTGAAACTTCAAACTTCTG CGGGGTGGTCCATAATAAAAAGCCTTAGTAACAGAACCAAAATGATACCATACCGAATTAATTTCAGAACTTATGGTTTA CTGCTTATTTGCATGTATTATATATTTCCCAGGGTTGTTAATGGCAGATAGCGTAGTGTAGCGGCAAGCCCAAAAAACGC TATTTCGAGCACTATAGCGGAAACTAGCGCAAATAGCGGTGAATAGTGGAGTAGCGGTGAACCCCCAGGCCGCTACGCTA TAGGCTATGGCGCCGCTATAGCGCGCTATTAACAAGCCTGATATTTCCATCACAATCTTAATCATTATTTTGCTGATCAA CCATTATAACTTTCCACTTTTACTATAAGGTGCACTTTTCACTTTAAAGAAGCCTAACCTGAAATAAGTTCAAAAGTTAA GAAATCTTCCTTAACAATGACATGAAGGATAAACTAATAAAAGACAGACAAACAAGTTAAAACAAATCCCTTTCAGGATC TGATAGAGACACCATCTTGAACAGACTATGGTGAGCACTGAAGTATGGCAACAAAATAAACTAGTACAATAGCAGATTTG TTATGTGGACGATATTTATTGAAAATGACAGCTTTTTTTAAATGCCTAGTTCTCCAATGAACAGCATATATTGCACATTG CACCGAGACTTTTCATTCTTATGGCTACCAAAATCTATTAGGTTGATTGTAGCTGATCTAGATTAAGAGGATACAGCCAT ATTGTTTTTCAGAAACAGAGAATTTCAGTAGCAAAGGACTTAGGTCCTTATAGGAAACTTCTCAGTATTTCTGCGGGGGG GCTGGTTGGGCTGCCTTTCCTAGTTTTGAACTGACAAGTATTTGCTGAAATTTCCATGGTGTGTTACTTTGTCAGTCTAG ATAGTTTTCTACAATGAGAGTGGTGTTTTATCTGAGGCGTCAGTTATTAATTTGCATATTTAGTACAAGCAAGGTTGTCA AACCCGATTTTTTCATGGTTTTGGATGTGCTTACTGAGCATAACCAAGATCTAGTCATCATGCATTGTTTGGTTTTTGCT GATGATCTAGTCCTAATGGGAGAGTCCAAGGATGAAATAAATGGCTTAACTTAGTTTGTGAGAAAAGCTTTAGAAGCACA TTTTTTCCGGTTAATTAGAAGTAAAACAAATTCTTTCCAATCATCCAATGAAAGTTTAGCAAGGCATGGAGAGTTGAAAT TTGGGGGTTAGACTCTACATGTCCTCAAGGTTCAAATATCTTGGATGTGTCGCATCAGATGCTGGAGAAACCCGGGGAGA TGTGAACTATAGGATTTAAGTTGGTCGGATGTTATGGAGAATGCCTTAGTTGATATTTGTGTTCAAAAGATACCTTTCAA GCTCAAAGGAAAATATTTCTGCACTACTCTAAGACTTGCAATATTTAATGGTACTGGGTGTTGGTAAAAACTGAACAAGA GCTTAAGCTTAATGTTGTGGAGATGATAATATTGCAGTGGATGTGTTAACAACACGAGAAAAATCATGAATTAATGTATT AGAGAAAAAGTAGGGATAGCACATTAGGATAAGATGGCAGAATCTTGCCTAAGCCTAAGCCCATGTGTGAAAAAGACTAA CAGAAAACCTGGTATGAAGCTTGAATCAGACTGAAGATAGCTATAGTTAGAGATTGAGGTGAAACCAATAAAAAGGAAAT GTATCTAAATGGACTTGCCGAGGATTTGGTTCATAACAGATTAGGATCCTCTCGTGTCACATGCCACTGTTATGTGAATT TTTGTGTCCATCTCTCTTTTTATAAATATTTAGAGAGTCTCACCTATATGATAGATATGAAAAGAGAGATAGACACAACT CTACCTTAACAGTGCCAATTGAAGTATCCACATAAGAGGATCCTGATCTATTCATAACATAACACGTTGGTATCATTAAT TTTATATCTTCATGATGAAACACCCCAAAACTTGGATGTTCTGGAAAACTTTTGTATATTTTTAGCTGTTCGTATTTAAG CTTTCTCATGATAGAGTGCTTTGTGGAAAAGCTTTCGTTAAATTGTTTCAGGAATACCTATTTTAAGGGTAGTCAGTTAT ATTAACAAAACTTATTTTCTTAGTGGCATGGAGTCCAAGTTTAACTCATGCATGGTGTTGGTAGACTAGCCTTGGTATTT TAAAAATTGTATAATTATCTTTTGAGCGTACATGATTTAAATTTCGAGTGAATAGTCATTTACTGATTCTAATTTTGTGA TTTTCAGGTACTTGATTGCCTCACACACAACTGACTATCAGAACCCAATGCTGTTCTTCAACACTGTTGCTGTGATTGTG CTAGTTGTTGCAAAGTTCCCTAATATGCACAAGGTTCGGATATTCGGAATCAATGCTGATAAGTGAAAACATTTGTGTCC AGTCCAAGAAACTTGGTTTTCTGCTCAAGAGTCTCTTCTCTTGTTCTGAAAAAGGTTGCACCTTTGTATAGAAAGGCAGA ACTAGAAAGATACTCAAAGTAATGATGTTTTGTTGCCAACTGTTTTTCTCAAGCTGCTTCTTCCAAGTTATTAAACCAAT AAAAATATGTTGAGTTATTTCTGTACAGTAGAGAAATATATGTAGTACCGGATTATAATGGTGCTTTAAAATGTACCTTC CTTTCCTATCCATTTTGGTTTAATTACGGCCTTAGAAGAACTGATATGCAAGAATGATCATTTGTGTTAGTATTAAATTC TATTGGTGAAACTTTTTTTAAATAAAAGCTTTTCCTGTTCCTTATCAGAAACAGAAGGACTTTCATGACAGCCTTGTAAA TCATATTCCTGTGAAATCCTAAACTAATTGTGTAGTTATATATTTATAATGCAAAATCCCGGGTGTGTGTTTCCTATCCC TATAATGGAAGGAGAATAAGCCTATGCTCATTCGAAATAACTCTTTGTAAGTTACCGATGCTTTAGGCGCCTATAAGAAA AACCAATGGTTTAGGCTGTAGGTTATTGATTCAACTTACACTATAAAAAACTCCTGTCGTGGATGTAAATGTCACACTCA TGGAAGTTCCTGTCGCGGATGTAAATGTCATGGAAATTCCTTCCGCAAATGTGACATTTTCATCCACAACAGATGGAGCA TGTTTTGCCCATTCAAACTATCACTATTCATAGTTTGATATATTTCTAATTATATATGCTTATTATTCCTAATTATACTA TAATAATAAATGTAAAACCAAAGATCATTGAATAACAAAAGTAAAGGAAGATTGAATGGAAAATGCATGCGAGTAAGAAG ACGAAAGCGTGAGGAAAAGGTTCTACGA
CDS sequence (LotjaGi3g1v0398700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAATCTGTACGTGAAGGCGGTGCCACCAGCGGATCTGAACAGGAACACGGAGTGGTTCACGTACCCTGGCGTTTG GACCACCTACATCCTCATCCTCTTCTTCTCATGGATCCTCGTTCTCTCCGTCTTCAGTTGCTCCCCTGGCATCGCTTGGA CCATCGTTAATCTCGTCCATTTCCTTGTAACATATCACTTTTTCCACTGGAAGAAAGGAACTCCATTTGCAGAGGACCAA GGGATCTACAATAGATTGACATGGTGGGAGCAGATAGACAATGGAAAGCAGCTCACTCGTAACAGGAAGTTTCTAACAGT TGTTCCTTTGGTGCTGTACTTGATTGCCTCACACACAACTGACTATCAGAACCCAATGCTGTTCTTCAACACTGTTGCTG TGATTGTGCTAGTTGTTGCAAAGTTCCCTAATATGCACAAGGTTCGGATATTCGGAATCAATGCTGATAAGTGA
Protein sequence (LotjaGi3g1v0398700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANLYVKAVPPADLNRNTEWFTYPGVWTTYILILFFSWILVLSVFSCSPGIAWTIVNLVHFLVTYHFFHWKKGTPFAEDQ GIYNRLTWWEQIDNGKQLTRNRKFLTVVPLVLYLIASHTTDYQNPMLFFNTVAVIVLVVAKFPNMHKVRIFGINADK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 157 | 157 | 1.1E-101 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 157 | 157 | 1.1E-101 | ||
| PIRSF | 3 | 157 | 155 | 8.0E-63 | ||
| Pfam | 15 | 149 | 135 | 1.1E-50 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 21 | 45 | 25 | - | – | |
| Phobius | 46 | 50 | 5 | - | – | |
| TMHMM | 49 | 68 | 20 | - | – | |
| Phobius | 51 | 68 | 18 | - | – | |
| Phobius | 69 | 103 | 35 | - | – | |
| Phobius | 104 | 120 | 17 | - | – | |
| Phobius | 121 | 125 | 5 | - | – | |
| Phobius | 126 | 143 | 18 | - | – | |
| TMHMM | 126 | 143 | 18 | - | – | |
| Phobius | 144 | 157 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0398700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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