Transcript — View — Lotus Base

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LotjaGi3g1v0398900.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0398900
Transcript ID	LotjaGi3g1v0398900.1
Lotus japonicus genome version	Gifu v1.2
Description	Protein yippee-like; TAIR: AT4G27745.1 Yippee family putative zinc-binding protein; Swiss-Prot: sp\|Q9T096\|YIPL6_ARATH Protein yippee-like At4g27745; TrEMBL-Plants: tr\|K7KZT1\|K7KZT1_SOYBN Protein yippee-like; Found in the gene: LotjaGi3g1v0398900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:80073389..80077614) extracted from Lotus japonicus Gifu genome v1.2.

AATCCTTTAGATGAGGTAGTTGGGGCTCGTTATAAAAACTGAACCACTCCCCACTTTCTCTCTCACGCAGCACAGATATA GATACTTAGCGTTAAGCATCAATATCTACTAATGCACAAACCAACAAGCATACATACACATCAGAAACCAAAAAAGGCAG TACAGGTAATTTTTATTTTGTTTAATCAATTGTTAGTTGAATCTTCCTTTCTACTGGTTCTAGTTTTACATTTTGTTGTA TGTGTTTGTTCTCCTCTGTGTCTAACTTTTGAAGCAAGACAAACAATTCTTAAAGAATTGCAACATTTTCTCACCAAACT ATTTCTAGTGCTTTTTTAATCCCATCTTAATCAACCCCTTTTGTTTATACAACACTCTTTTAGTCATATTCTTTTCTTCA AACTATTTCTCAATGATTGAGTACATTTCTTGCAATTCATTCAGCCCCTGATACACATTTTTGACAAATCACACCAATTA TCATATTCTGACATTGGCTGCTAGTGTTTGATCATAATTTTATAGTTGAGTCTTTGACCAGACTTTTCTTTTACACTTTT ATTTATGAGTAGGAGAAGATAAGGTGGTAGTTCCAGGAAAGTTCATCAAATGGCAGAATTGATGGGATCACGGGCATACT GCTGCTTCAAGTGCCAGAACCTTGTTGCTTTCCATGATGATATCGTTTCCAAAGATTTCCAGGTGAAATTTTTTCTTGCA TTTTTGGCACTTTCCCCATCTTTATGTTAGGTTTCTACTTTCTAGATTGAAATGGTTCATCCATTTGAACCAATCTTGTA TGCTCAGAATAGGATCAGGAAAAGGAAGGTTTCAAATAAATTGCTGACCTAAAGATTTAGATTTTACATACCCTCAAATG AATCATGCTGAAAACTTTTCAAACAAGGCCCTGAGACTAATTTGATCTGTTCTAAAAGGTACCACTGCAAATTATATTTC AAATTTCATTCAAATTTGTCAGTACCATGTTATATAAATCAAAATCTTGTTTTCTTATGCTTAAATGAATAAGGCCTTGT TTGGAAGAGCTTATCTTATAGTATAAACAATTATGGAAGTGTTTGGAAGAGCTAATGCAAATAGCCTATGACTTATCTAT AGTTGTTTTGAACTTATTTTTGTAAGCTGCTCTGAATAGCATGAGTAAGCGCACATGCCTACCTAAAACCTATTTTTCAT CTTATTTCAATAAATTTCTCAAATTAGCTTAGGAATAAGAGCTGAGTTAACTTGTTTTCCCAAACGGACCTTAAATGTGG TGCGCAAACTGGCTAAAAGGATGGATGATTATAACATGTTTAGATCAGCTTATTTTTCCTCATAATCAATTCTGGCACTT GAAGTTACCCATGAGGCTTCTCTCCATAATTGATTTTTACTGTAGTAGAAGAATTACCAAACGTGTGTTAAGATATTTCA GGTTTCTTTTTAACCAAGGATTTTCAAGGGTTATGTTCAACAGGCAAGCAATGGCAGAGCTTTTCTGTTTTCTCATGCCA TGAACATTATCTTGGGTCCTAAAGAGGATAGGCAGCTTATGACTGGTCTTCACACAGTTGCTGATGTATATTGCTCTGAT TGTGGAGAGGAACTGGGATGGAAGTACGTTAAAGCTTATGAGCAAACACAGAAGTACAAAGAAGGGAAATGTGTACTAGA GAAGTTCAAGATAGTTAGGGGAAATGCCTAGTGAACAGGTTTCAGTTCCAAGTTCTTTGATCCTCAATTATTTCCACAGT TGTATAGATGTGAATTGTTTCGTAAAGGTTGCTTGATCAGAGAAAAAGGGGTTCCTTAAAAAAAACATGATTTAGTCACT GATAAAACTTCTCAAGTTGTTTCATGATATCTACCCAAATGTGAACTGTTAAATAGCCCTTGTTCAAACTGTGCAAAAAG ATTCATTTTCATGAAGAATTACAAAATTCATTTATTGGCCTTGTGCATAAAGCTTGGTTGTATTGCACTTTTGCATCCAA AATAGTTTCTTGTAGAGAAGCATTGGGGTATAACTGAAAATTGAATTGTTAGCGAAATTGACACATCACAGCTCAATCAA ATAGAACCCACATATCAGTATATCACTGTGTCCCACACTGATAATTGATGTATTGGCTGCAATATATGCAACTTTGTAAC TCTTTTATTCATTGTCATAAAACAAGTTGCTTGTTATCCTTCAAAGGTGAGAAATTGAATATGAATTGCAAGCTCTTTGC TGTTTAAGAATCTGCCAATTCAAAATTGTTTGAGTGTTAAAATTGACTATAGTAAATTGAATTGAAAGTATAGTGATTTA TGTTGGATACATTTACGATTAAAGCAAATTCTGTCGAGTAGTATTGTGAAATCTAGTTGAAAACTTCATATTTGATCATG TCAACAGTAGAAGTTAGGATTTGTAATCTTATCCTAAAATTCATTTTGAAGCTAAAACTGTTAATTTGAAAAAGAAGCAT TCATATTAACTCCTGAGAATTAATTATCAACCAGAAAAATCACTCCTAAGACTGAGGAACATGTAACCAAAATCCTACTA TGTTCTGTGCTTACAAAGAAATGGTCTTTAATTTAAACTGACAACTTCTGTCTGCTCAAGCTTTTGAATGACTAGTCTAT GGTTGCATTTATATGAGTCAAGTTGTCAGCGTGGGTTCTTTTTCACTTCAGACTGGTGTCCAATAGTGTGGGGTATGCAA AACTCCTGAAGCATTTATTGAAGCCACATAACTAAATAATAGTAGAAAAAGAACTGAAGAAGAACAGTGTGGATTGCTGT GTTTGAATTGAAGTTGAGATTAACTTGAAATCACATTCAACCCAACAGAAGTGAAGAGTTTTTTTTCACATTTGGTGCAT TGAAATTTTGTTTTTTAGTTGAAGTTGTCTTATTACACGTGTGAATTGAAAATCAAACACACAAAAACAATGATTAAAAT CTGTATAATCATTTATCCATCTCAACATTCTCCAACCTGCAATATTCATTTTTTCCTTTTGCAACTTTGCTGTCTAATAT CAATACGCAGCTTGGTTGTATCTGCAATATATGATCCCAATGAAAACTCTAAAGATTGAGGGGTTCTTCCTTAGACACTC CAAAGTCGTTTGTATAGGTTTATTTAAATTTCTAGTTATATTTCATAAAGACTGGCCAACATGGTGATGTCTGAAAATAG TATTAGTTTAATTGAGCCCAGTGTAACATACATGAACTCTGTCCTAAGTTTTCTGAAGCTATGTAGGTAGGTGATCAAGC AGACAAAACTATATATGTTCAGTTAATAAATTGCTCAGCATTTGCAAGGATTCCAATATTTATATTGCTTTTGTACAAGA GAGGATCAATCTCATGGATTTGAGTGACAAAGTTATTCTTAATATGAGTCAAGAAAGTCATCTGTCTTGGTTCCAAAGAA CATATTCTCTTATCTCTTAGTTTATGCAAATTGCAAACTAATAATGAGTGTTCTGATTCTGTTTGCCATGTTCCCACTGT TATTGCATTTATTCACGCATAATTAAATACTTGGCTTTAGCATTTTCTTTAGTAAACAGGCACTGTTGGCTGTCAATGAT ACCATTGCATTGAAAGTAGATAGTGTCCCCTATTTATAAGTTTCATAGTAGAGTACTTATATAATTATACAAATTTTCAC CTGACATGTTCTGATGTTCATGCACACATCCATTTATCACCATTCATCTTTCTCTAGCTTTTGATCTTATTTTTTCCCCT GTTCCACAATGGTTGTCTGAATTGTGGAGGACATACATGGTAACATGTCCATGTAAGAAGTATTTCCCTTCATGATTACG CTTTCTGTTTGGAAAAATGACTTCACATTGACACGATACCACAAACTTGCTTTAAAGTTTCCTCTTCCTGTTTTGGTTCC CATATCATTTGATTTCTAGCCTTCCATATCTTGTTCTGTCTGAAGGCATCATTAATAAAAAGAATGATATAGATGAAGTG CATGTTTGGGAGTGTGGTGCGTATACCTAATTGATTCTGAAGCACTAAAGATGGTGGAGAATTGATTTTCACATGTTATG GATACTTTCTATCATACTTAATTATGAGCTCTAAATTAATTAGAAACAAACCATGTGGGTAGCTTATGATGTGAGTAAAA TAAATTCCAAAGAGCAACCACTTTTAGTGTTTGTTTACTCAAATGCCCTTCAATTTGTGCAAGGAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0398900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGAATTGATGGGATCACGGGCATACTGCTGCTTCAAGTGCCAGAACCTTGTTGCTTTCCATGATGATATCGTTTC CAAAGATTTCCAGGCAAGCAATGGCAGAGCTTTTCTGTTTTCTCATGCCATGAACATTATCTTGGGTCCTAAAGAGGATA GGCAGCTTATGACTGGTCTTCACACAGTTGCTGATGTATATTGCTCTGATTGTGGAGAGGAACTGGGATGGAAGTACGTT AAAGCTTATGAGCAAACACAGAAGTACAAAGAAGGGAAATGTGTACTAGAGAAGTTCAAGATAGTTAGGGGAAATGCCTA G

Download CDS Sequence

Protein sequence (LotjaGi3g1v0398900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAELMGSRAYCCFKCQNLVAFHDDIVSKDFQASNGRAFLFSHAMNIILGPKEDRQLMTGLHTVADVYCSDCGEELGWKYV KAYEQTQKYKEGKCVLEKFKIVRGNA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13848:SF51 View details on PTHR13848:SF51 Search for proteins/transripts with this domain View external data on PTHR13848:SF51	3	105	103	7.1E-52	–
PANTHER	PTHR13848 View details on PTHR13848 Search for proteins/transripts with this domain View external data on PTHR13848	3	105	103	7.1E-52	IPR039058 Show description in modal box View details on IPR039058 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51792 View details on PS51792 Search for proteins/transripts with this domain View external data on PS51792	8	105	98	44.25	IPR034751 Show description in modal box View details on IPR034751 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03226 View details on PF03226 Search for proteins/transripts with this domain View external data on PF03226	10	101	92	1.1E-13	IPR004910 Show description in modal box View details on IPR004910 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0398900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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