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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0402500 |
| Transcript ID | LotjaGi3g1v0402500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein, putative; TAIR: AT2G46770.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43; TrEMBL-Plants: tr|A0A1J7H0H5|A0A1J7H0H5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0402500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80541467..80543670) extracted from Lotus japonicus Gifu genome v1.2.
ATATAGTCTTGGATCTTTTACATACTCAATATTGCAGTACACAGACCAACACATTATCTTTCCTTTTCCTTTCTTGTAGC TGTTTTGAATGTGTTCTCTCTGATAACAACTAGGTAGCTTCTCTCTTCTTGCTATCATCACTCTCCAACTCACCCTGAAT GCCGGAAAACAATATGAGTATTTCTGTGAATGGACAATCTCAAGTCCCTCCTGGCTTCAGGTTTCACCCAACAGAAGAGG AGCTTCTGCAGTACTACTTGAGAAAGAAGGTCTCTTATGAGAAGATTGACCTTGATGTCATTCGTGATGTTGATCTCAAC AAGCTTGAGCCATGGGACATACAAGGTGACATATTTAACTATATCCAGCTATCTTTATGTATTCATTTACTTCTATTTCT GGTGTGTGTATATGAACCATGTCATGATGTTGAGTGTGGTTTAATTTGATGTTGTGCAGAGAAATGCAAAATAGGAACCA CTCCACAAAATGACTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCGACCGGAACACGCACCAATCGCGCCACCGCT GCAGGGTTCTGGAAGGCCACTGGCCGTGACAAGGTGATTTACAGCAACGGCAAGAGGATTGGAATGAGGAAGACTCTGGT TTTCTACAAAGGCCGAGCTCCTCATGGCCAAAAATCTGACTGGATCATGCATGAATACAGACTAGACGACAACAACACCA GCAACGAGACCAATATTGTAAGTATCATCCATCAACCATCCAAAGAGCCTTAAAGCTGTTAGTGAAAGAAAGCACCTAAA GAAGAGCTATTTTTTCATACAAATATTGTTCACTTCAATAATTTTACCATCATATTATAGCACGTTTCTTTACACAAGAG TTCATTGTGTTTGAAGTATGAACAAAGAACGGGTCAATCTATCTTCCGCTGGGAGCATGGACTCAGCCTTTTTTTTATTA GAATAATATAGAGTCAATGTGATGGAAGATGTACTATAGCCAGGAAGAAAGATCAAACTCTGAAACTTTTTATGATAAAG ACTCTGATACATTTTTTCTGCAATAATTTTTGTTAGGTGGCTAATGTGATTGGAGATGGTAGCCAGGAAGAAGGATGGGT GGTGTGCAGGATATTCAAGAAGAAGAACCATCTGAAAACCCTAGACAGCCCCTTGGCCTCCTCCATCTCCGGCGAAGGCG GAAGAAGAAGCCACTTGTTTGACGCTTGTGATGAGGGAGCTCTGGAGCAAATACTTCAGCAAATGGGAAGGGGATCATCA TGCAAGGAAGAGAACAACTACGATCAAGCCAACTACAATAACTACGGAAGGTTTGTGAGGCCTTTCGACAACAATGGCGG TGGTGGAGGTGGCGGCTACCATGACAACAGGTTCTTGAAACTCCCAAGCTTGGAGAGTCCAAAATCCGCAAGCATGGACA CCAATGACAACAATGATAACAACAATAACGGGTACCATCCGGTTATTCCGGTGGAGATGGCAACAGAGAATAATGAAGGG TCATTCACAATCCACCATCCATTGGAGGCATCACCATCATCAATGGTGGTAACATCAGGAGGTCTAACCAACTGGGCAGC GTTGGATAGGCTTGTTGCTTCTCAGCTGAATGGCCAGCCATGCTTCAATGATCCCACCATGGTGTTCTGCACTGGCAGTG ACCACCATGATCTGCAACTCCCCACTCTCCGATCATCATCATCATCTTCATCAACATCATCACATGCTGCCAGGGCTGGT CCTGTTCCTGCAGCTGCATACATGACTCCTGCACAGGATCATCACTACACCACCACCAGCGAGATTGACCTGTGGAACTT TGCTCGTTCCACTTCCTCTGAGCCGCTCTGCCACGTGTCCAACACGTCAGTGTAGCGGAATAATAATTAAACCAAATCAA ATCAAATCCCTCCTTCTTCTTTTTCTCCTCCCATGTTCCTTTGTCAAATAGGGAAATAATTAGGCCTTTGATCACATATC ATGTTTCTTAGTTTTTTTTTAATCAAATCAGGGGTTGTCATTAAATGTGATCATGTTCTCAATATACACATTACTTAAAT TAGCTTTGATCAAATTTAAATGTTATTTCCTTTTGTAAATCCTTCACTAATAAGCTCTTTTTTAAAAATTTATATATGAT GTCCGTCGGTTCATAACCTTTATAAGAGTTATGATATATTCACA
CDS sequence (LotjaGi3g1v0402500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGGAAAACAATATGAGTATTTCTGTGAATGGACAATCTCAAGTCCCTCCTGGCTTCAGGTTTCACCCAACAGAAGA GGAGCTTCTGCAGTACTACTTGAGAAAGAAGGTCTCTTATGAGAAGATTGACCTTGATGTCATTCGTGATGTTGATCTCA ACAAGCTTGAGCCATGGGACATACAAGAGAAATGCAAAATAGGAACCACTCCACAAAATGACTGGTACTTCTTCAGCCAC AAAGACAAGAAGTATCCGACCGGAACACGCACCAATCGCGCCACCGCTGCAGGGTTCTGGAAGGCCACTGGCCGTGACAA GGTGATTTACAGCAACGGCAAGAGGATTGGAATGAGGAAGACTCTGGTTTTCTACAAAGGCCGAGCTCCTCATGGCCAAA AATCTGACTGGATCATGCATGAATACAGACTAGACGACAACAACACCAGCAACGAGACCAATATTGTGGCTAATGTGATT GGAGATGGTAGCCAGGAAGAAGGATGGGTGGTGTGCAGGATATTCAAGAAGAAGAACCATCTGAAAACCCTAGACAGCCC CTTGGCCTCCTCCATCTCCGGCGAAGGCGGAAGAAGAAGCCACTTGTTTGACGCTTGTGATGAGGGAGCTCTGGAGCAAA TACTTCAGCAAATGGGAAGGGGATCATCATGCAAGGAAGAGAACAACTACGATCAAGCCAACTACAATAACTACGGAAGG TTTGTGAGGCCTTTCGACAACAATGGCGGTGGTGGAGGTGGCGGCTACCATGACAACAGGTTCTTGAAACTCCCAAGCTT GGAGAGTCCAAAATCCGCAAGCATGGACACCAATGACAACAATGATAACAACAATAACGGGTACCATCCGGTTATTCCGG TGGAGATGGCAACAGAGAATAATGAAGGGTCATTCACAATCCACCATCCATTGGAGGCATCACCATCATCAATGGTGGTA ACATCAGGAGGTCTAACCAACTGGGCAGCGTTGGATAGGCTTGTTGCTTCTCAGCTGAATGGCCAGCCATGCTTCAATGA TCCCACCATGGTGTTCTGCACTGGCAGTGACCACCATGATCTGCAACTCCCCACTCTCCGATCATCATCATCATCTTCAT CAACATCATCACATGCTGCCAGGGCTGGTCCTGTTCCTGCAGCTGCATACATGACTCCTGCACAGGATCATCACTACACC ACCACCAGCGAGATTGACCTGTGGAACTTTGCTCGTTCCACTTCCTCTGAGCCGCTCTGCCACGTGTCCAACACGTCAGT GTAG
Protein sequence (LotjaGi3g1v0402500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPENNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSH KDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNTSNETNIVANVI GDGSQEEGWVVCRIFKKKNHLKTLDSPLASSISGEGGRRSHLFDACDEGALEQILQQMGRGSSCKEENNYDQANYNNYGR FVRPFDNNGGGGGGGYHDNRFLKLPSLESPKSASMDTNDNNDNNNNGYHPVIPVEMATENNEGSFTIHHPLEASPSSMVV TSGGLTNWAALDRLVASQLNGQPCFNDPTMVFCTGSDHHDLQLPTLRSSSSSSSTSSHAARAGPVPAAAYMTPAQDHHYT TTSEIDLWNFARSTSSEPLCHVSNTSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 382 | 374 | 4.0E-157 | – | |
| PANTHER | 9 | 382 | 374 | 4.0E-157 | – | |
| SUPERFAMILY | 10 | 177 | 168 | 2.09E-59 | ||
| ProSiteProfiles | 16 | 177 | 162 | 57.334 | ||
| Pfam | 17 | 144 | 128 | 1.1E-35 | ||
| Gene3D | 25 | 183 | 159 | 6.1E-59 | ||
| MobiDBLite | 364 | 383 | 20 | - | – | |
| MobiDBLite | 364 | 380 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0402500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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