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LotjaGi3g1v0403000.1

Overview

Field Value
Gene ID LotjaGi3g1v0403000
Transcript ID LotjaGi3g1v0403000.1
Lotus japonicus genome version Gifu v1.2
Description Subtilisin-like protease; TAIR: AT5G67090.1 Subtilisin-like serine endopeptidase family protein; Swiss-Prot: sp|Q9FHA4|SBT19_ARATH Subtilisin-like protease SBT1.9; TrEMBL-Plants: tr|A0A072VNF7|A0A072VNF7_MEDTR Subtilisin-like serine protease; Found in the gene: LotjaGi3g1v0403000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:80590751..80592030) extracted from Lotus japonicus Gifu genome v1.2.

GTGGTATGTGAAAATAAATATACACCAATTCTACTTCAAAAAGCCAAAGTTGCTGGTTCAGTTTTCATAGCAGACTTCAC TGATAATTATTTGGGGTTTACTCCATCCATCATCATTGATTCGATGAATGGGGATATTGTCAAAGCTTACATCAAGAGTA GCTCTAATTCAACAGCAAGCATGTCTTTTAAGAAAACAGTTTTAGGTACTAAACCTGCACCGAGTGTAGATAGTTATAGT TCCAGAGGGCCATCTAAGACCTGTCCATTTGTGTTGAAACCTGACATCACAGCTCCTGGAACATTAATCTTAGCTGCATG GCCTGAAAAGGTTCCTGTGGATGTGGATCAGTTTAGCAACATTAGTCTCTTCAACAGCTTCAATTTGATTAGTGGCACAT CCATGGCATGTCCTCACATTGCCGGTGTGGCAGCTCTTTTGAAAGGAGCACGTCCAGATTGGAGCCCTGCTGCTATTCGG TCAGCCATCATGACAACATCAGACATATTCGACAACACCGCGGAATTCATCAAAGACCTCGGCGAAGGTTACGAAAGGGC TTCTCCTCTGGCCTTGGGCGCGGGCCATGTCAACCCCAACAGAGCCCTTCACCCAGGACTTGTTTATGACGCGGGTGTGC AAGATTATGTGAATCTTCTCTGTGCACTAAACTACACCCAAAAGAACATCATGGCCATCACGAGATCCTCCTCCTATAAT TGCTCCAGCCCTTCCTTGGATCTTAACTGCCCTTCTTTCATTGCTTATTTTCATGCCAATGATTTTTCTTCTAGGAGGAT GCAAGAATTTCAGAGAACAGTGACCAATGTTGGGGTGGGAAAGTCAACTTATGTTGCTAGAGTCACTCCCATCAAAGGAT TTCGTGTTAGTGTCATCCCCAACAAGTTGGTGTTCAAAGAGAAGAACGAGATGCTAAACTACACGTTGAGGATCGAGGAC GAAAGCATAATAAGAGAGAATGAAGTAGCTTTTGGGTATCTAACTTGGAGGGACATGAAGCATGTGGTCAGGAGCCCTAT TGTGGCACTCAAATCCAAGATCAGATATTATGACGGAGAAGTGTTTTCCTATCCATATGCATAGAGTAAAAAATAAATGG TTTTAAAACCATTTTTTCTATAGCAAATAATAGTCATTTCTCCCAACTCATAATAGTAACCATTATGTTAAATTGATTCG CATTCAACTCAAAATGACTGGAATTGAAGTGAAAGTGGCTGTCACATCTTTTTGATTATCAATAGAACTAATGTAGTCGT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0403000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGGGGATATTGTCAAAGCTTACATCAAGAGTAGCTCTAATTCAACAGCAAGCATGTCTTTTAAGAAAACAGTTTT AGGTACTAAACCTGCACCGAGTGTAGATAGTTATAGTTCCAGAGGGCCATCTAAGACCTGTCCATTTGTGTTGAAACCTG ACATCACAGCTCCTGGAACATTAATCTTAGCTGCATGGCCTGAAAAGGTTCCTGTGGATGTGGATCAGTTTAGCAACATT AGTCTCTTCAACAGCTTCAATTTGATTAGTGGCACATCCATGGCATGTCCTCACATTGCCGGTGTGGCAGCTCTTTTGAA AGGAGCACGTCCAGATTGGAGCCCTGCTGCTATTCGGTCAGCCATCATGACAACATCAGACATATTCGACAACACCGCGG AATTCATCAAAGACCTCGGCGAAGGTTACGAAAGGGCTTCTCCTCTGGCCTTGGGCGCGGGCCATGTCAACCCCAACAGA GCCCTTCACCCAGGACTTGTTTATGACGCGGGTGTGCAAGATTATGTGAATCTTCTCTGTGCACTAAACTACACCCAAAA GAACATCATGGCCATCACGAGATCCTCCTCCTATAATTGCTCCAGCCCTTCCTTGGATCTTAACTGCCCTTCTTTCATTG CTTATTTTCATGCCAATGATTTTTCTTCTAGGAGGATGCAAGAATTTCAGAGAACAGTGACCAATGTTGGGGTGGGAAAG TCAACTTATGTTGCTAGAGTCACTCCCATCAAAGGATTTCGTGTTAGTGTCATCCCCAACAAGTTGGTGTTCAAAGAGAA GAACGAGATGCTAAACTACACGTTGAGGATCGAGGACGAAAGCATAATAAGAGAGAATGAAGTAGCTTTTGGGTATCTAA CTTGGAGGGACATGAAGCATGTGGTCAGGAGCCCTATTGTGGCACTCAAATCCAAGATCAGATATTATGACGGAGAAGTG TTTTCCTATCCATATGCATAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0403000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNGDIVKAYIKSSSNSTASMSFKKTVLGTKPAPSVDSYSSRGPSKTCPFVLKPDITAPGTLILAAWPEKVPVDVDQFSNI SLFNSFNLISGTSMACPHIAGVAALLKGARPDWSPAAIRSAIMTTSDIFDNTAEFIKDLGEGYERASPLALGAGHVNPNR ALHPGLVYDAGVQDYVNLLCALNYTQKNIMAITRSSSYNCSSPSLDLNCPSFIAYFHANDFSSRRMQEFQRTVTNVGVGK STYVARVTPIKGFRVSVIPNKLVFKEKNEMLNYTLRIEDESIIRENEVAFGYLTWRDMKHVVRSPIVALKSKIRYYDGEV FSYPYA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51892
1 162 162 13.839 –
PANTHER
PTHR10795:SF614
2 312 311 2.4E-124 –
PANTHER
PTHR10795
2 312 311 2.4E-124 –
Gene3D
G3DSA:3.50.30.30
3 27 25 1.1E-59 –
Pfam
PF00082
25 131 107 1.6E-22
IPR000209
Gene3D
G3DSA:3.40.50.200
28 176 149 1.1E-59
IPR036852
SUPERFAMILY
SSF52743
31 166 136 1.31E-29
IPR036852
ProSitePatterns
PS00138
91 101 11 -
IPR023828
Gene3D
G3DSA:2.60.40.2310
179 310 132 1.1E-35 –
Pfam
PF17766
206 307 102 5.4E-27
IPR041469

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004252
Molecular function Serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0403000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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