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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0403800 |
| Transcript ID | LotjaGi3g1v0403800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT1G01080.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic; TrEMBL-Plants: tr|I3T082|I3T082_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0403800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80654466..80658443) extracted from Lotus japonicus Gifu genome v1.2.
ACTCAGCAGTGAGCTCTAAGCCAGTGACCCTCCCTCTCATTCTGGGCTCATGGCACTAGCTCTGCTACCTTCTTTCCCCT CTCCCTCTTCAGCTCTAACCTTCAACCACAAACCCCAACCACCACCTTCATCCAAACCCTTCGTTTCACATTTCAGACAC CCAAACTGTGATCCCTGCTTATTCTCCACAACCACAATTCTACAACCTTCTACATGGAAACCTACCCTTTTTGTGGCGGC AGCGATTCCAGAAGCGGTTAACGGAGAAAAATCTCTCAACACTCAAAACGACGACGTTTTCAAGAATGAGGAGGAGGAGC AGCAACCACCGCAGAGGAGGCCCAGAGGACCCTGTGAAATCTATGTCTGCAATCTTCCCAGAAGCTGCAACGCTGCTCAC CTACTTGATTTGTTCAAGCCTTATGGAACCATTATATCTGTTGAGGTTCATGCCTTTTTTTTTTTTTTCATTTTTTCATG TTTTTTATTGTTCCTTTGATTTTTCTTGTTAAAGTTATCATTTGGGGTTTCTTGAATTTCTATGTGTAACCCAAAGTTAC AAGCTTTTATTAAAAAATTTGTCATAAGAGCAGGCTTGTTAATAGCGAGCTATAACGTAGCGCCCTAGGGGTTCACCGCT ATTTGCTGCTATTGTCCGATATTTGCATCAATAGCACTTAAAATAGCGTTTTTTGGGCTTGCTGCTACACTACGCTATCC GCCATTAACGACCCTGCATAAAAGTTTATTTTAATTTTCAAGAGTTGCAGTCTGAATTCTGAATCAGCAATTCAGAAGTG AGTGATTCAAGTGAGTGTAGTTTGATATGATAATTGTTTGGAAGTATGGAATTGGAATGATCTATTGTATTTTAACTTGC AGGTTTCCAGAAATGCTGAGACTGGTGAAAGTAGGGGATGTGGTTATGTCATAATGGAATCCATAAACTCAGCAAAAAGT GCAATTGCTGCATTGGATGGATCAGTTAGTACTCTGAATTTGTCTCACTGTTTGTGTTGGATTCACTGTGCCATTGATTT TGATTTCTGATCTGAATTTCACTTTCATTTTTTTAGGATGTTGGGGGGCGCGAATTGCGGGTTAAATTTTCAGTTGAGAT GAGTCTTGAAAGGACGGATGCCAATGCGAATGCGGGGGAAATGTACGCTTCTCCCAAGAGAACATTTTACTATGAAGCTC CTCATAAGTTGTATGTGGGCAATCTTGCTAGGGTTGTTAAACCTGAGCAGTTGAGAAATCATTTTATCAGATTTGGGAAT GTGCTTAGTGTTAGAGTGTTGCATGATCGTAAACAAGGGAAAGCCCGGGTCTATGCGTTTCTCTCCTTTGAATCAGAGGC TGAACGTGATGCAGCAATGTCTCTTAATGGAACAGTAAATTCTGCTTCCACTTCTTCAGTAATGTTGTTTCATTTGTTTC TGTTTGTTACTTAGTTTGATCTTTCTTGCAGGAATTTTATGGCCGTACTATTGTAGTCAGAGAGGGCGCACAGAGGACTG AGCCTTAACCGGGATTTCAGTGCCTGCGTAAAGATGGCATCAATTTTGGTTTTTCACATGGAGGAAGATTGCAAGTGTAT GTAGCTGAGAGTTAGAAACAGATTTGTGGAGCTTCCTTAACTAGGAAATGTAAGCTCAAAGAAGAAGGGGCCTTATAACT GTGGCAGTTGCATCAACATATGATTCATGCTCTTTTTTGGTTTTACATCAAATTGCAATGAGTAAGTGCATGTTTGGTTT TGCTTCTAGTGAGACGGAATCAATTCTACTTTCTGGATGCGACAAGAAGTAACTTTTCCTGTACTAACGTGATAGTTTAG TGATGTTCCAAACATGCAAAAATATGCTGTAGTAGTAGAATCAAATTAAGTTTTGAATTTAACACGGCCACTATTGCTGA GTATTGAAATTTAGAACATGATTAGCCATTTGCATGTTACAAGAGTAAAGCTTTAATATTTTTAAACAGATGCCATGTTA GTTGGTATGTATCATGTGAGTATGAGCTGGTTAAACTTATAATGATAGCTACGCCTTCAAGGCCATTGAAGTAGTTTTGC TGTGTACAACTTGAGGTCATTTTACGCCAGCATGTTTGGAAATTTTGACCAAAATTACAACAATTGTAAGTTGTAACTGC TAATTCTAACTAAAATTATGAATTATACTTAATCTACCCCGTAGTTCAAAATTTCAAGTGACATTATATCTAATTTCTCT CTTAGCAACATAAACCTATCACACTTTAATGGTTAAGTTAGGGCATCAGCCACTTGTTCTTCTATACTGCAGTAGACCAG CTCAATTTCCCCTTTATTCACTTAATTTCTCAAATAGTGAAAGATGATCTTTACATGGTTGGTCCTGTGAAATTGGATTC TTTCTGGAGTTTACTGCTGAAACATTATCTACACCCAACACCATAGGTTGCTCCACTCCGATGCCTCTACTCCAATAATG TTTTAAAGCCACATAAATTTTTTTTCCCAAGTATCCCACGACCGATAGTCATGAGATTAATCCCTAGAGACTCGAAGATC ACATTAAGTGGGTAGATCTCTCCCAATAAATGCTACTGCACACTCACTGCCCAGTGATCGAACCCCTGAACTAAATGCTT TAAGACCTCAACTATCTACAAGTTATGCTACACATCGTTGATAAAGCCACGTAACTTTTAAGTGCACCTAATGATGCAAC AAAATTGTTCTATCTTACATGATGTTAGAGCCACAACCAGTTGCTTCTCTGAACTCCATTAGAATGCAGTATTACACAAT TGAAAAACATAACCACTCGTGCTCTTATTATCTTCTTTCATGTAATCATGTCCTCACCTATATGAGTCCATGAAACCATA AATTACAGAATATTTCCCCTTGAGGTTTTTTTTTTGTAAGCATTTCCCCTTGAGTTGGCTTATATCATTGGTGAATAATC TGCCGGTCCATTTCATTGAAGCATCAAGGTCCTCTCTCGGTTCATCAGGCCCACGAGCAGATCAGGTCAGATCATATTGA TTGATATTTTCTTTTTAAAAATATAGTCCAATTATAAAAATACATTGACATAGAAATTTATCAACATTTCACATGAAAAA AACATTTTACTACTGGGAAATAGCAAAATAGATTTTCCCTATTCCATATTTATAATTGGGATACAAGTGGAGTTGCGTGT ATACATAAAAAATATATGTTTGAAGTTCCATTTTCACTTCTTTATTTTGGACTATGTTTAATTAATTTTAAACTTAGTTT GGAGTATGTGCGACTAATCTAAAATAAAAGAAAAGGATTGTACATGTGGTTTTTTTATGGGGCAAATCTGTCTTGAAAGG TCTTTTCAACATATAACTTTTCATGTGTGACTCGAGACTATGAGGGGCTGGTGCTTGCATCGGTGGCTAGTTTTCCAATG ATGGCTCCCTCCCAGGTTTTGGCAGAGTGTTGGCCCTTCGATGAGTGATGGGTTTGGCTTCTCAACTTGACTTTCAGCGT GTTTGATTTGAAATAGATTGTCTCCAGTTATTTTAGAGATGAAAAAAGCCTCATGATGACGATTCTTATATGGCTTCTAT TGTTAAGGACTGCATTTTTCTTTATCGTTCTTTTGATTTTGTGACTCTTTTTTTTTTCGTCCAGGCAACACCGTTGCGGA TTTTCTATCTAGGAGGGCCTCATCGTTCGCTAATTTGGGGTGGATGGAACAAGTTTCCCCACAAGTTGTTCCTTATGTAA TTGCGGATGTTTTAGCCTCAGTGCTAGTCCAATTTTAATTGAATTGCAGGAATTTTCAAAAAAAAAACACATAACTTCTC ATGAGTTATAACAAGTGTGCTCACTTTTATTAATGTTTATCTTTGAGTAAATCATCAGTTTTGTCTCATTAACTTTTTTT CTCACTAATGATTTCGTCCATAAAATAATAAAATAATCTAAAAAAACCTAAATATTCA
CDS sequence (LotjaGi3g1v0403800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTAGCTCTGCTACCTTCTTTCCCCTCTCCCTCTTCAGCTCTAACCTTCAACCACAAACCCCAACCACCACCTTC ATCCAAACCCTTCGTTTCACATTTCAGACACCCAAACTGTGATCCCTGCTTATTCTCCACAACCACAATTCTACAACCTT CTACATGGAAACCTACCCTTTTTGTGGCGGCAGCGATTCCAGAAGCGGTTAACGGAGAAAAATCTCTCAACACTCAAAAC GACGACGTTTTCAAGAATGAGGAGGAGGAGCAGCAACCACCGCAGAGGAGGCCCAGAGGACCCTGTGAAATCTATGTCTG CAATCTTCCCAGAAGCTGCAACGCTGCTCACCTACTTGATTTGTTCAAGCCTTATGGAACCATTATATCTGTTGAGGTTT CCAGAAATGCTGAGACTGGTGAAAGTAGGGGATGTGGTTATGTCATAATGGAATCCATAAACTCAGCAAAAAGTGCAATT GCTGCATTGGATGGATCAGATGTTGGGGGGCGCGAATTGCGGGTTAAATTTTCAGTTGAGATGAGTCTTGAAAGGACGGA TGCCAATGCGAATGCGGGGGAAATGTACGCTTCTCCCAAGAGAACATTTTACTATGAAGCTCCTCATAAGTTGTATGTGG GCAATCTTGCTAGGGTTGTTAAACCTGAGCAGTTGAGAAATCATTTTATCAGATTTGGGAATGTGCTTAGTGTTAGAGTG TTGCATGATCGTAAACAAGGGAAAGCCCGGGTCTATGCGTTTCTCTCCTTTGAATCAGAGGCTGAACGTGATGCAGCAAT GTCTCTTAATGGAACAGAATTTTATGGCCGTACTATTGTAGTCAGAGAGGGCGCACAGAGGACTGAGCCTTAA
Protein sequence (LotjaGi3g1v0403800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALALLPSFPSPSSALTFNHKPQPPPSSKPFVSHFRHPNCDPCLFSTTTILQPSTWKPTLFVAAAIPEAVNGEKSLNTQN DDVFKNEEEEQQPPQRRPRGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI AALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRV LHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVREGAQRTEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 15 | 6 | - | – | |
| Phobius | 16 | 290 | 275 | - | – | |
| Gene3D | 67 | 186 | 120 | 1.4E-26 | ||
| PANTHER | 68 | 288 | 221 | 2.7E-98 | – | |
| PANTHER | 68 | 288 | 221 | 2.7E-98 | – | |
| MobiDBLite | 72 | 100 | 29 | - | – | |
| MobiDBLite | 80 | 96 | 17 | - | – | |
| SUPERFAMILY | 91 | 180 | 90 | 2.01E-26 | ||
| ProSiteProfiles | 102 | 180 | 79 | 16.978 | ||
| SMART | 103 | 176 | 74 | 2.6E-22 | ||
| Pfam | 104 | 174 | 71 | 1.2E-18 | ||
| Gene3D | 187 | 289 | 103 | 2.9E-21 | ||
| SUPERFAMILY | 207 | 285 | 79 | 2.42E-22 | ||
| ProSiteProfiles | 209 | 286 | 78 | 17.046 | ||
| SMART | 210 | 282 | 73 | 2.3E-20 | ||
| Pfam | 211 | 279 | 69 | 1.9E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0403800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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