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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0404200 |
| Transcript ID | LotjaGi3g1v0404200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G61950.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q700E4|BH067_ARATH Transcription factor bHLH67; TrEMBL-Plants: tr|I1KHN8|I1KHN8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0404200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80689689..80692642) extracted from Lotus japonicus Gifu genome v1.2.
CCCACTTGGTTCTCTCTCACACACACCAACTCTCACAGTTACAAATGCATCTGCTTGCATATCTCTTCTAAGCCCAGTTG ATAAGTTTCCACCTTTCATTTCTTACCACATCCCTCCACTCTTTTTGTTTGCCTTGTGATTAGCACTGTTTTTTGAACTT TCTCAGTTTTCTACTTCTAACACATTCTCTCTCTCTTTTTCTCTTTCTCTCTCTCAATCTACTTCATTGTTACTCCAAGC AAGCACGGCATTTATTACATTATTCTATTATTCTATATAAGAGAGTATCACAGGCATCAGAAAACAAAGGAATATATTTC TGGGGTGATACTATTCCGGGGTCTTGTTCTGCATCTTCTTGGGGCATTACATTTATTGCTATTCTCTCGTTACTATCAAT TACCTTAGGGAATGTTGGTCACTCTCATTGAGGCCTAATGTAAGAAGGAAAAAGAATCACCAATATTCTGGATTATTGCT CAGCTTTGATGATGGAGAGGCTTCAAGGACCCATCAATTCTTGTGTATGTTATTAATTTTCCTAGTTTCACTTTCTTCTT CATTTTCCTTTTCTTCTAACAGAAAATAGGTACTGCATTTACTCCTCAAAACTCTTGCATTAAATGCATTGTGTTGACAT TCTACTTTGGTTTCCCTTTATTGCACACTTTTTGCATATACTAACCCATTTCTCTATTCTGGCCCAACCCCAACCCCAAC CCCAGTCCCATTAATGGAACCATATATTCCTTACTAATTTATGAATTTGGCTGTGACTTGTGATAGTGAAATCCAACCAA ACACTTCACTTTTTTTACTCTTTTGTTTCTCTTGCAGTTTTTTGGTGAACATTTGGAAGTGAATTGTTTAGAGCAGGCTT TGGTTGAAGCAGAAAGCTTGAGACTTGAAGAGGAACAACATCTTCTCATTTCAACTTTAGAGGATAACATGCCATTTCTG CAGATGCTTCAGAGTGTAGAGTATCATCCACAACAGTTTTTCCCTCTGAAAGAACCAAGCTTCCAAACACTTCTGAGGCT GCAACACCTGAAGAAACCATGGGAACTTGAGAATCAAACTCAAGCTCAAGCAGCATTTGAACAACTTGAGAGCTGTGTGA CACATGACATGTTAGAGATGCAGTCACCTGTGAAATCAGAAAGCAACTACGAGCTTCAACAACAACAACACACACATTCA GCTTCATGTGTTGAAAAACTCAGCTATGAGTGTAACCAGGAAGAACCACTCAAAACAGAACAGTCATGCCTCAAATCTCA GCATGCAACAAGGGAAAGGAGAAAGAGGAAGAGAACAAGGTTAACTAAGAACAAGGAAGATGTGGAGAATCAACGCATGA CCCACATTGCTGTTGAACGCAACCGGAGACGCCAGATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCCCCTTCA TATATTCAAAGGGTATGCAACTTTTTTCTCATCTTTTCTTGAAATATGGAGTTAAATTGACATACCCTTTTTTTCAAATC CACTTCTTTTGCTTTATTCATGTTAAAAATCCAAGCTTTTTTATGTTGGATACTAAAAAAGTGTTCTTTTTTTCTCATGA AACAGGGTGACCAAGCTTCAATTATTGGAGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGGTTCAATCTCTTGAA TCACAGAAAAGGATGAGAAAAAATGAAGAGGCTTGTTCTTCTTCATCTGTGTTTTCTAAGCCACCATCAGATTCATCTCC ATCACATGGTTTTGGAATGAGGTCATCATCATCCACAGAAGGAGATGAGGTGAAAGCAGAGAATAAGTCAGAATCTGCAG ACATAAAAGTGACCTTGATTCAATCCCATGTGAACTTGAAAATTGAGTGTGAAAGGAAGCCTGGGCAATTGATAAAGGTG ATTGTTGCTTTGGAGGATCTTAGGCTAACCATTCTGCATCTCAACATCACATCTTCTGAAGCTTCTGTCATCTACTCCCT CAATCTCAAGGTATTACTCTGTCTTTTTGGTTTTTACTTCAATTTTTTATGTACTGTAGTCAACTCACACCACATGAAAG TGGAATCAAGTCAGTGTACTATTCAACCTCTTCCTATTTCCAACACTGTCTTTCATTATAAAAAAAAAGCTACAAATTAA CATTTGACATTATTATATTCTCTGTGCTGTGCTTGTGCTAATGCTAGTTATGATATTACACACACTTTTCCATTTTTGTG GTAAATATAATAATGGACTGTGTGGTGGGGTTTTGCAGATTGAAGAAGACTGTATGCTAGGTTCAGCAAATGACATTGCA GAAGCAGTTCATCATATATTAAGCATTATTAATGGTAGCTAAAGGCTAAAACCTAATAGCTTTAACCTTAGGGACTTGGT AGCAGAGGAATAAAGGATGAAACATTGCAAGGAAGATGGAGGAGTTGCTGGGGAAACAGGGAATAGCAGAAGATGGTGGA TGCATCATGTTAGGTAGCTCAGGAGTATAGAGGGCATAAGATAAGACATTTGCTGTTCAAATATTTTCTAATGTTAATCT AATTAGAATTTAGAAGGCTAATATTGTAAAATGTGTTGGTTATTGTTTTGTTGCTTTTGATGAATTGAGAATTTGGGTTG ATGGATGGATAAAGGCATGATATAGGGTAGTTCTAGGTCCGAAGATGTCTGTCTCCATGAGAAGGAGGACCCACTTTGAA AATTTTAGGGTTCTCATCATTACAATTTACAAGGACTTATGAGGGGAATGATGCTTCTCTTTTTATATTGACTTTGCACA ATGGCCTATACTATGAAAAGATGTTTCATGATTATATGTAAAATGCTTATGAGATCTGAACAGAATCAATGGACATAGCA TTGAAAAAGTACCCCAATCAAATAATCAAATGGCAATAAAATATGCGTTTTGATACTGGTTGAGTAAATGTGAA
CDS sequence (LotjaGi3g1v0404200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGAGGCTTCAAGGACCCATCAATTCTTGTTTTTTTGGTGAACATTTGGAAGTGAATTGTTTAGAGCAGGCTTT GGTTGAAGCAGAAAGCTTGAGACTTGAAGAGGAACAACATCTTCTCATTTCAACTTTAGAGGATAACATGCCATTTCTGC AGATGCTTCAGAGTGTAGAGTATCATCCACAACAGTTTTTCCCTCTGAAAGAACCAAGCTTCCAAACACTTCTGAGGCTG CAACACCTGAAGAAACCATGGGAACTTGAGAATCAAACTCAAGCTCAAGCAGCATTTGAACAACTTGAGAGCTGTGTGAC ACATGACATGTTAGAGATGCAGTCACCTGTGAAATCAGAAAGCAACTACGAGCTTCAACAACAACAACACACACATTCAG CTTCATGTGTTGAAAAACTCAGCTATGAGTGTAACCAGGAAGAACCACTCAAAACAGAACAGTCATGCCTCAAATCTCAG CATGCAACAAGGGAAAGGAGAAAGAGGAAGAGAACAAGGTTAACTAAGAACAAGGAAGATGTGGAGAATCAACGCATGAC CCACATTGCTGTTGAACGCAACCGGAGACGCCAGATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCCCCTTCAT ATATTCAAAGGGGTGACCAAGCTTCAATTATTGGAGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGGTTCAATCT CTTGAATCACAGAAAAGGATGAGAAAAAATGAAGAGGCTTGTTCTTCTTCATCTGTGTTTTCTAAGCCACCATCAGATTC ATCTCCATCACATGGTTTTGGAATGAGGTCATCATCATCCACAGAAGGAGATGAGGTGAAAGCAGAGAATAAGTCAGAAT CTGCAGACATAAAAGTGACCTTGATTCAATCCCATGTGAACTTGAAAATTGAGTGTGAAAGGAAGCCTGGGCAATTGATA AAGGTGATTGTTGCTTTGGAGGATCTTAGGCTAACCATTCTGCATCTCAACATCACATCTTCTGAAGCTTCTGTCATCTA CTCCCTCAATCTCAAGATTGAAGAAGACTGTATGCTAGGTTCAGCAAATGACATTGCAGAAGCAGTTCATCATATATTAA GCATTATTAATGGTAGCTAA
Protein sequence (LotjaGi3g1v0404200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMERLQGPINSCFFGEHLEVNCLEQALVEAESLRLEEEQHLLISTLEDNMPFLQMLQSVEYHPQQFFPLKEPSFQTLLRL QHLKKPWELENQTQAQAAFEQLESCVTHDMLEMQSPVKSESNYELQQQQHTHSASCVEKLSYECNQEEPLKTEQSCLKSQ HATRERRKRKRTRLTKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLVQS LESQKRMRKNEEACSSSSVFSKPPSDSSPSHGFGMRSSSSTEGDEVKAENKSESADIKVTLIQSHVNLKIECERKPGQLI KVIVALEDLRLTILHLNITSSEASVIYSLNLKIEEDCMLGSANDIAEAVHHILSIINGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 377 | 344 | 9.4E-137 | – | |
| PANTHER | 34 | 377 | 344 | 9.4E-137 | – | |
| MobiDBLite | 151 | 185 | 35 | - | – | |
| Coils | 164 | 184 | 21 | - | – | |
| Gene3D | 174 | 251 | 78 | 7.3E-13 | ||
| CDD | 182 | 239 | 58 | 1.70457E-12 | ||
| ProSiteProfiles | 183 | 234 | 52 | 15.751 | ||
| SUPERFAMILY | 183 | 251 | 69 | 5.5E-17 | ||
| Pfam | 184 | 235 | 52 | 2.3E-10 | ||
| SMART | 189 | 240 | 52 | 1.8E-10 | ||
| Coils | 231 | 251 | 21 | - | – | |
| MobiDBLite | 246 | 291 | 46 | - | – | |
| MobiDBLite | 253 | 281 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0404200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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