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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0405300 |
| Transcript ID | LotjaGi3g1v0405300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT2G46870.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|O82799|NGA1_ARATH B3 domain-containing transcription factor NGA1; TrEMBL-Plants: tr|A0A0S3T055|A0A0S3T055_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0405300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80856958..80859733) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTTTTAATCTTCTTAATAAGAAGAATAAAACTAGCTTGCAACAAACATTTTTGCTTCTTTTTTCCTACTTGTAAAGA ACCTTCCTTGTGAGGTAACTAGCTATTTTTGTTAGCTAAAACTCACATCATTCTTCTTCCCCTACTTCATCTCTCTCTCT CTCTCTCTAACTCCACATATTATGTTATGTTTAGGTCAACAATAACCCCAACTTGACCCCATTTTTGATTCCTCCATAAA CTTGTCTTTAGGGTTTTATGCCTCCTGAGTCAAATTTGAAGGCACCGACTCTTGCAATTGTCTTGTACTAACTAAGAACC AGCTGCTAGCTTTTCTTACTTTTCCTTAATTCACAGCCTCACAAATCTCCACCCTCAAATATCTTCCTCTCAAAAAATAT TTTTGTTGGTATATATATAATCTTTCTTGGAATTTTTAAATTTTTATTATTTGATTCCTTTGCTTATATATTTATTTATT TCCCTCCTCCCTAACTTCCTTCTTCCTCTTTTTTCCATCATGTTTTTTTTTTTTTATATTCTTTCTGGGGGGTGACATTA TTTATTGTTTAATTTTCTGAGATCCAGAGGTTATAATTAGCAGAGAATTCCAAGGTGGGTGGGTCAGTCTATAATTTCAT GGAACTGATCCAAGAAGAAGCAGTGAAAGGTTATTCTGATAGCAGAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAG AAGAAGAAGCAGGTGAAGAAGGAATCATCACAACAACAAGAGAAGAAGAAGAAGAAGAAGAAGAAAGCAGCAGTAAGCAC CACTGCCCCTTTTCTTCACCCTCTAATTTCTCTTTATCTTCTTCTTCTCCCTCAATCACAGATTACAACAACACTCATCA TCTTCATCATCACAATCATCATGTAATGAACATTCCTAGCCAAAATTCATGGCTTGGAATGACTCATGATGATCCTCATC ACTCTCCAGAGGCCAACACAGCCACTGAATCTCACAATTCATCATCTGGGTTAGGGTTCTTGTTACACCAAGATGGAGCA TCAGCATCAGCACCAACAACATCCAATTTCACCACCAATCACACAACAAAACAGCTAGATTTCATGGAATTATCACTTGG AAACAACCAAAATCTCTCTGATGAACCCAATTTTCAACAACAACAACAACAAGGATCACTATCTGCTTCAGCTCCTCCTC CTCTTTATGGCCATGCAAGTGGTGGTGCTAGTTCTTCAGCAAACCAGCAACAACAACCCATTGAGAAAGAGCACATGTTT GACAAAGTCGTGACGCCGAGCGATGTGGGGAAGCTGAACCGATTAGTGATACCAAAACAGCACGCTGAGAAGTACTTCCC TCTCGATTCCGCCTCGAATGAGAAGGGGCTACTTCTCAATTTCGAGGACCGGAATGGGAAGCTCTGGCGGTTCCGGTACT CGTACTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGATGGAGCCGGTTTGTGAAGGAGAAGAAGCTTGATGCCGGC GACATTGTCTCGTTCCAGCGCGGTGTCGGGGACTTATGCCGGCACAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCA TCATCTCCCTGATCCTTCATCAGCAGCACTCTTCACACCTTTCTTTCTTCCTCCCAATCATCATCACCAACCACACTTGT CACAGTACTCAATCAGGTGGGGTGGTGCTAATAGCAGATTCTATTCCCCACCACAGCCGCCGCGCCACCACCTCCACCAT GACCCTCTGCAGCAGCAGCAGCTCAATTACAACCACCACATGTATCAACATCATCATCATCCATTTCACCCCTACCATGA GCTGAACTCAGGATCTGGGTCAATCTATTACCTGAGATCAGCACCATCAATGTCAATAGCTGATCATCAAACCTTAGCAA GACAACAACAACAACATCAAGAAGGAGGAGGAATCAGCAGCAATATTGCCCCCATGATAATTGATTCTGTTCCAGTTGGG CATCATCACCACCACCACCACCACCAACACGGCGGTAGCGCTGGCATTAGTAGTAGTACTAGTAGTAGTAACACTGCAGC AAAAAGGTTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCTTCATCTTCATCTTTACCTTCTCCTTCTCTACCAC AGAATTTGAGGGTGCCTCATGAAGACAGTACAATTTCACAATCATCAGCAAGGTTTGGGATTGGGGATCTCCAGAGAGGG GAGGCTTCAGTGCTTTTTGATTTGGACCCATCTTTGCAGTATCGGCAGTGATGAAAACAAAGTTGAAGAAACAAAATAAT GATGGAGAAGAAGAAGAAGAAGAAGATGATGCCAGTTCTGAAGTTTACTGGGATAGCTAGCTACACACTCTCTTTTGCAG CATTATTATTATTACTACTATTTTTTATTATTTTTTTGTTTTGTTTTTTTCTCCCCTTTCTTCATGCTACAAAGGAAAGT GCTTTCAAACTTTCTTCTTCTGATGATAAGAAGTGATAATTAGAGTTTGAACTTTTATCTCAATGAATTAATTGGGTCCT GAAGATATATTGGAACATCCTTCCAGAAATGGGAAATGAAAATCTTGGAATTCAATTACATTTAGACCTTTTCTTCAATT GTGTATAATAGAATTACAACACATTTATATATATATTAATTTATCAGAGTATAAATGTTTGTTTGTTCCTTTCATATATT TTATTAGTATTACTTGAATATAAATATATATGTAGACTGTGCTCTCTCACTTTCCG
CDS sequence (LotjaGi3g1v0405300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTGATCCAAGAAGAAGCAGTGAAAGGTTATTCTGATAGCAGAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGA AGAAGAAGAAGCAGGTGAAGAAGGAATCATCACAACAACAAGAGAAGAAGAAGAAGAAGAAGAAGAAAGCAGCAGTAAGC ACCACTGCCCCTTTTCTTCACCCTCTAATTTCTCTTTATCTTCTTCTTCTCCCTCAATCACAGATTACAACAACACTCAT CATCTTCATCATCACAATCATCATGTAATGAACATTCCTAGCCAAAATTCATGGCTTGGAATGACTCATGATGATCCTCA TCACTCTCCAGAGGCCAACACAGCCACTGAATCTCACAATTCATCATCTGGGTTAGGGTTCTTGTTACACCAAGATGGAG CATCAGCATCAGCACCAACAACATCCAATTTCACCACCAATCACACAACAAAACAGCTAGATTTCATGGAATTATCACTT GGAAACAACCAAAATCTCTCTGATGAACCCAATTTTCAACAACAACAACAACAAGGATCACTATCTGCTTCAGCTCCTCC TCCTCTTTATGGCCATGCAAGTGGTGGTGCTAGTTCTTCAGCAAACCAGCAACAACAACCCATTGAGAAAGAGCACATGT TTGACAAAGTCGTGACGCCGAGCGATGTGGGGAAGCTGAACCGATTAGTGATACCAAAACAGCACGCTGAGAAGTACTTC CCTCTCGATTCCGCCTCGAATGAGAAGGGGCTACTTCTCAATTTCGAGGACCGGAATGGGAAGCTCTGGCGGTTCCGGTA CTCGTACTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGATGGAGCCGGTTTGTGAAGGAGAAGAAGCTTGATGCCG GCGACATTGTCTCGTTCCAGCGCGGTGTCGGGGACTTATGCCGGCACAGGTTGTACATAGATTGGAGGAGAAGGCCTGAT CATCATCTCCCTGATCCTTCATCAGCAGCACTCTTCACACCTTTCTTTCTTCCTCCCAATCATCATCACCAACCACACTT GTCACAGTACTCAATCAGGTGGGGTGGTGCTAATAGCAGATTCTATTCCCCACCACAGCCGCCGCGCCACCACCTCCACC ATGACCCTCTGCAGCAGCAGCAGCTCAATTACAACCACCACATGTATCAACATCATCATCATCCATTTCACCCCTACCAT GAGCTGAACTCAGGATCTGGGTCAATCTATTACCTGAGATCAGCACCATCAATGTCAATAGCTGATCATCAAACCTTAGC AAGACAACAACAACAACATCAAGAAGGAGGAGGAATCAGCAGCAATATTGCCCCCATGATAATTGATTCTGTTCCAGTTG GGCATCATCACCACCACCACCACCACCAACACGGCGGTAGCGCTGGCATTAGTAGTAGTACTAGTAGTAGTAACACTGCA GCAAAAAGGTTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCTTCATCTTCATCTTTACCTTCTCCTTCTCTACC ACAGAATTTGAGGGTGCCTCATGAAGACAGTACAATTTCACAATCATCAGCAAGGTTTGGGATTGGGGATCTCCAGAGAG GGGAGGCTTCAGTGCTTTTTGATTTGGACCCATCTTTGCAGTATCGGCAGTGA
Protein sequence (LotjaGi3g1v0405300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELIQEEAVKGYSDSREEEEEEEEEEEEEEAGEEGIITTTREEEEEEEESSSKHHCPFSSPSNFSLSSSSPSITDYNNTH HLHHHNHHVMNIPSQNSWLGMTHDDPHHSPEANTATESHNSSSGLGFLLHQDGASASAPTTSNFTTNHTTKQLDFMELSL GNNQNLSDEPNFQQQQQQGSLSASAPPPLYGHASGGASSSANQQQQPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYF PLDSASNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLCRHRLYIDWRRRPD HHLPDPSSAALFTPFFLPPNHHHQPHLSQYSIRWGGANSRFYSPPQPPRHHLHHDPLQQQQLNYNHHMYQHHHHPFHPYH ELNSGSGSIYYLRSAPSMSIADHQTLARQQQQHQEGGGISSNIAPMIIDSVPVGHHHHHHHHQHGGSAGISSSTSSSNTA AKRLRLFGVNMECASSSSSSLPSPSLPQNLRVPHEDSTISQSSARFGIGDLQRGEASVLFDLDPSLQYRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 80 | 80 | - | – | |
| Coils | 9 | 36 | 28 | - | – | |
| MobiDBLite | 16 | 46 | 31 | - | – | |
| MobiDBLite | 55 | 77 | 23 | - | – | |
| MobiDBLite | 94 | 146 | 53 | - | – | |
| MobiDBLite | 113 | 146 | 34 | - | – | |
| MobiDBLite | 161 | 184 | 24 | - | – | |
| MobiDBLite | 161 | 207 | 47 | - | – | |
| PANTHER | 169 | 503 | 335 | 2.1E-93 | – | |
| PANTHER | 169 | 503 | 335 | 2.1E-93 | – | |
| Gene3D | 202 | 328 | 127 | 1.0E-46 | ||
| SUPERFAMILY | 211 | 318 | 108 | 2.22E-29 | ||
| CDD | 212 | 301 | 90 | 2.79191E-26 | ||
| SMART | 214 | 319 | 106 | 2.6E-22 | ||
| Pfam | 214 | 318 | 105 | 7.9E-29 | ||
| ProSiteProfiles | 214 | 319 | 106 | 14.029 | ||
| MobiDBLite | 423 | 442 | 20 | - | – | |
| MobiDBLite | 423 | 439 | 17 | - | – | |
| MobiDBLite | 454 | 477 | 24 | - | – | |
| MobiDBLite | 496 | 525 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0405300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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