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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0405500 |
| Transcript ID | LotjaGi3g1v0405500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome production factor 1; TAIR: AT4G01560.1 Ribosomal RNA processing Brix domain protein; Swiss-Prot: sp|Q5R631|RPF1_PONAB Ribosome production factor 1; TrEMBL-Plants: tr|A0A072TYA8|A0A072TYA8_MEDTR Ribosome production factor-like protein; Found in the gene: LotjaGi3g1v0405500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80902816..80907616) extracted from Lotus japonicus Gifu genome v1.2.
ATACAAATATGAACCGTTGGATTTATCCAACATTCACAAAGCTTGGTGCTGAAGGCTGTGTAGGGTTTAATTCCGGGAGA GGTTCCGCTTCCAAAAGCCCTACTCAGCCGAACCGCCATTCTTCTTCAACCCTTTTCTCCTGATTCGAAAAACCCTAATC TCGCTCCAATGGGGGGAAAGAGGAAGAAGAACGATGATTCAATCATGGACGACGGGGATGAAGGTTCGAGAAAGAGAACC AAATCAAAGGAACCAAAGCAGAAGGACCAGGTGCTTCCTTCCATGATCAAGAACAAGGAGAAGAGATCGGAGTTGCACGC CAAGCTCAAGCGCCAGAAGAAGCTCGACAAGCGCGCTAAGGCTCAGGCTCGAGATGCTGATGTCAAGCGAGCTCTCGAGC TCGGTGAGGAGGTTAATCTCATTCTCCTTATCGTAATCTGAATAATTTTGAATGGTTCCTTGTTGTTTCGTTTGGTGATT TGTGATTGATTTTGTGTTTTATTGTGTTGTTGATTGTTGCAGCCGCCGGAGAAGAAGGTCCCTCGTACCATTGAGAACAC TAGGGAATTGGATGAGACCATTTGCAAGCCTGATGACGAAGAGGTTTATTGTTTTTCAACTTTAATTATGCACTAAATAT TGTTGGAAAATAGTACTAGGTTTCTGTTGTTGGTTAAGATTGTATTTCAATGTTCTGAATTGTGATTGCAGAATATGAGT TAGTTACCGGTGCAATGATTAACATCCTTAGTTTAAGGTTGTATATTAAGAAAAACTATGCATCCGATGGAATCACATAT GAGGCTAGTTCTACATTTATACCAATCAATGTGCTAATAATCTAATGGCAAAGAAGGGGAATGTGTACAAACTATGGAAT TTGCTAACAAAATGAATGTTATTTGTGTGTGTGGATTACTAGTTCTTAATGAGGGACTTCTGTTTAGTACTTTTAATTCG CTGGCAGTGTTGCTTCTAATTGATTTTTTCTATTACTGATATTGATTGACTAATGAAGTCTTTTTGTTTACAGTTGTTTG CTGGAAATGATGCTGATGAATTCAGTTCAGTTTTGAATAAAAAACAAACTCCCAAGATATTAATCACCACTTGCCGCTTC AACTCTACAGTATGTTTCCTATATGGCATGCCATTGTTTGTAATCTCAAGTTTGTCTTAAGCACATTTGAAGCACAGACC CTTTCCTAGTTAGTTTGCTTTCTGCAATTTTTTTTGGCACTCTTAGGAGTAGAATTGAGTCAGGAAATTGTGTCTTCTTT ATTATACTAAAATGTTTCCATCTTTTGATTGAAACATGACTTGATCAGAGGGGACCTGCTTTTATATCAGAACTGCTTAC GGTTATACCAAATTCACAATATTTGAAGAGAGGAACCTATGATTTAAAAAAGGTAATGGGTGTCCTTTCGCCATGTGAGT GAAAAGCATGCAGTTTAATTTGCTTGAACTTTTCTTTCTAATTTGCATCTTGGGCTGCAGATTGTAGAATATGCAAAGAA AAAGGACTTCACTTCTCTTCTAGTTGTTCACACCAATCGCAGGGAACCAGGTTGGTGGAGTCTTCCATGAAAATCCTATG TAGATTTTTTCAGATATTTTCATGCCTTTGGCTTTAGATTTTACTATTTCAGGCATGACTTCCATATAAGTTTTTAATTA TTTTCCCTTATGAATTGCAGATGCACTCTTAGTCATTGGCTTACCTGATGGACCTACTGCTCATTTCAAACTCTCAAAGC TTGTTTTACGCAAGGATATTAAGGTTTGATGTTTTATATTAATAATTAGTTTATTATGATAAAAGTAATAATATAGAAGT ATATCAGGTTTTCTGTTGATGTTGGTTTGGAGTAATCTGCATAATTTGCAGGAGAAAAGCAAAATAATTGCACTTATTTT GAGTCAAGTGGTGCACACCATTGGAAAACCACTTAAAATAACTTCTGCTTTTAAAAAAATCTCTCAAAACGAAATCACTT TTTCATACAAACTTATCATCACTTTTATTTTAAGCAGACACAAACAGGTGTTCTGTGTTAATGAAAAGAAAAGATTTGAT TTTTTTGTTGCATGCATTTTGTGTCCCTTTGCAGAATCATGGAAAACCAACCAGTCACTTGCCTGAGCTTGTGATGAATA ACTTCACAACACGTCTAGGGCACCGAATTGGAAGGTAACCTTTTTCTATTGTTCTGTGTTCCATTTGTTGTTAAACATTT ATGGTGTTACTTATAATGTTTTATCTGAACATTTTGTCATATGCAGATGCTAGGTCTGTTTGAAATAGTCTTGTACTGCA TGCCAATTATTACTTTTTAGGCTTAAATATGTTTTTGGCCCCTCTTAAATGTTTTTTTTGGAATACACCCTTATTTTGAA AATAATTGGGAGGTTTAAGCCCCTGCCGTCAATGTCCGTCAAAAACTGATGACGTGGCTAACAGAAGGACTAAAACCTAA GTCCCATTACATTTTTTATTAATAAAATATAATTAAATATTTTTCAAAATAGGGGTGCATTCCCAAAAAAAATATTCGCA GGGGCCTTAACCGAAGTACCCCTATTTTAGTGGGACCCAAAACATATTTAAGCCTACTTTTTATATAAGTTATTATAAAA AGAGATAAAAATGAATCTTAAGGCTATTTCCTAATTTGCTAACATTGCTTTTCATTGTCAAATATCTCTTTTGGTTCCTA GTGTTTCTATGTAATGAGGGGGTTTGTATAATAAGCCTATCACTTAGCGCTCCTTATTTATTGGTTTCTTTTCTAATAGA TTGATACAGTCACTTTTCCCACAAGATCCTGAATTTAAAGGTCGGCGTGTTGTCACCTTCCACAACCAGAGAGACTTCAT ATTCTTCCGGCACCATCGGTATGTATCCATAGTCTTACATGGTATTGTGTTGTCATTTGTTTCTTAGTATTAGTGATTTT CGTTTCCTTATATTATATTATGTTCAACCATGTACATAAGGTACATTTTTGAAACCAAAGAAGTTAAAAAGACTGAAAAG GACAAGGATGGGAAGAGTAAGAAAGTTCCTGAGCAGGAAACTAATGTCCGTCTTCAGGTTGGTTTCAGCTCTTTTATTAG CTTTTCTTATAACCATTTCAAAACTTAATGGCTGTTACTACTGAATGTAATTCTTGTATCATATTTTAGTTGCTTTTTAG TTTTTATGCTTTCCACATTTCTTTATTGCTTTTTCTTGCGTTCCTGAATATAAGATTTAATAGGAGAATGGTACCCGAGT AGTGTCTCATACTAGTTAATAGATAATAGACCTGACCTGATGGTTCAGATAATTGTCTTCCGTGATTTAGGGTAATATTT ATCCGATGGTGATATTGAAGAGAGGTTTTGTGAAGATTAAGTAATAGTTTTTTACATGAGAAATTTGTTATTAAATATTC ATTACTCATATCTAGTGAGTTAACTAAAAATATGAACATGGAATTAAGGGGCTGTTTGTTTTAACTTAAGTCTAGTATAA TTAAGTTTGCTAGAATTAAGTTTAAGAAAATGAATTTGTGTTTGGAAATGATATTTAAAACAGTAGAAGTTTAAAAAAAT GATAGTTGTTTGGACTTAGGATAGTAAGATAGAATTACTTTTGAGGCGTAATAAACTAATAATAGATATATCATGTGGGT CTCACACTTAGATTGAATTCTTCTTCTGTTTAACGTAAGTCAAGTCTTGTCAAGTAATTTTTCCAGCGGAAAAAGCTATT AAAAAAATTGATTTTAACATCCAAATGTTATTATTTCTCAACTGGAACTATTAAAAAAACAGTCTCGAAATGTTTCCTGC ATGAGAAAATAGGGATGCTTTCATTAAAGATGGATCTGCTCTCAATTTGCATTTGTTTTACATTTACCTTCACTATGATC AATTGTTTCTATTGTTGACAAGGTTTTTTATTCTTCTAACTGATTCGTTCAAGTTTTATATTAGTTGTATTTGTTCACTT TTGGTAAAACTTGCATCTGCAATAAAATTCCCTTTAAATTTGCAGGAATGTGGTCCTCGTTTCACATTGAAGTTGATTAG CCTGCAGCATGGAACATTTGACACTAAAGGTGGAGAATATGAGTGGGTTCACAAGGTATTTTACATGTTAACCAGTCCTA TATTGTTTCGATACTTTGCTGACTTTGTAAAGCATTTCTCCTGTATTGTTGCTAACTGTCCTTTATTTTTCTCCTTTAGC CGGAAATGGACACCAGCAGGAGGAGGTTTTTCCTATGACCTTGTTTGGGAACATTGCATTTTGGAAGTCATTTTTGCTGG AATAGGTTTTACCTGGTGAAGAGGGTGGGTTATCTTGAAATCGTTGGAATCTTTCAACTTGTTTTTACGTAATGCTATGT ATTTATTTCTCAACTTTTATTTCGGGGCTGAAGACCCATCATCTCTGTATACCAGTGATCAATTTTGACTTCATATTCAT AGGTGGATAGGGAAAGATAGTATGCATCTACAATGTCAGTTCTCTATATTATCTATGTTTTAGGTTGCATTTCTTGAACA TTGATGTGCTGAGGCTATGGAACTCATTAGATTATGCAGGCGTTATGTGTCTCTTACCTAGAGTGTTTAACTCCTTATTG ACCAAAAAGAAAAAAGGGTTTATAATTCTACATGAGAGCCTTGAGTATTGGATCGTTAATTATCAAAGGTGCTAAAATTC CTCCACTGACTTGACAAACTCTATCAAGGCTGTTTTCAACTAGAGTCAACAATGGGGCGGGCACCGCCCTTGACCTTTTA G
CDS sequence (LotjaGi3g1v0405500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGGAAAGAGGAAGAAGAACGATGATTCAATCATGGACGACGGGGATGAAGGTTCGAGAAAGAGAACCAAATCAAA GGAACCAAAGCAGAAGGACCAGGTGCTTCCTTCCATGATCAAGAACAAGGAGAAGAGATCGGAGTTGCACGCCAAGCTCA AGCGCCAGAAGAAGCTCGACAAGCGCGCTAAGGCTCAGGCTCGAGATGCTGATGTCAAGCGAGCTCTCGAGCTCGGTGAG GAGCCGCCGGAGAAGAAGGTCCCTCGTACCATTGAGAACACTAGGGAATTGGATGAGACCATTTGCAAGCCTGATGACGA AGAGTTGTTTGCTGGAAATGATGCTGATGAATTCAGTTCAGTTTTGAATAAAAAACAAACTCCCAAGATATTAATCACCA CTTGCCGCTTCAACTCTACAAGGGGACCTGCTTTTATATCAGAACTGCTTACGGTTATACCAAATTCACAATATTTGAAG AGAGGAACCTATGATTTAAAAAAGATTGTAGAATATGCAAAGAAAAAGGACTTCACTTCTCTTCTAGTTGTTCACACCAA TCGCAGGGAACCAGATGCACTCTTAGTCATTGGCTTACCTGATGGACCTACTGCTCATTTCAAACTCTCAAAGCTTGTTT TACGCAAGGATATTAAGAATCATGGAAAACCAACCAGTCACTTGCCTGAGCTTGTGATGAATAACTTCACAACACGTCTA GGGCACCGAATTGGAAGATTGATACAGTCACTTTTCCCACAAGATCCTGAATTTAAAGGTCGGCGTGTTGTCACCTTCCA CAACCAGAGAGACTTCATATTCTTCCGGCACCATCGGTACATTTTTGAAACCAAAGAAGTTAAAAAGACTGAAAAGGACA AGGATGGGAAGAGTAAGAAAGTTCCTGAGCAGGAAACTAATGTCCGTCTTCAGGAATGTGGTCCTCGTTTCACATTGAAG TTGATTAGCCTGCAGCATGGAACATTTGACACTAAAGGTGGAGAATATGAGTGGGTTCACAAGCCGGAAATGGACACCAG CAGGAGGAGGTTTTTCCTATGA
Protein sequence (LotjaGi3g1v0405500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGKRKKNDDSIMDDGDEGSRKRTKSKEPKQKDQVLPSMIKNKEKRSELHAKLKRQKKLDKRAKAQARDADVKRALELGE EPPEKKVPRTIENTRELDETICKPDDEELFAGNDADEFSSVLNKKQTPKILITTCRFNSTRGPAFISELLTVIPNSQYLK RGTYDLKKIVEYAKKKDFTSLLVVHTNRREPDALLVIGLPDGPTAHFKLSKLVLRKDIKNHGKPTSHLPELVMNNFTTRL GHRIGRLIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEVKKTEKDKDGKSKKVPEQETNVRLQECGPRFTLK LISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| MobiDBLite | 1 | 89 | 89 | - | – | |
| PANTHER | 25 | 353 | 329 | 5.8E-153 | – | |
| PANTHER | 25 | 353 | 329 | 5.8E-153 | – | |
| MobiDBLite | 62 | 89 | 28 | - | – | |
| Gene3D | 127 | 239 | 113 | 8.4E-14 | – | |
| SUPERFAMILY | 128 | 327 | 200 | 1.57E-58 | – | |
| ProSiteProfiles | 128 | 330 | 203 | 45.525 | ||
| SMART | 131 | 324 | 194 | 8.1E-59 | ||
| Pfam | 142 | 322 | 181 | 2.8E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0405500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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