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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0407800 |
| Transcript ID | LotjaGi3g1v0407800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Remorin family protein; TAIR: AT1G53860.1 Remorin family protein; Swiss-Prot: sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr|K7MEL6|K7MEL6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0407800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81129991..81133924) extracted from Lotus japonicus Gifu genome v1.2.
AAGGGGTGGGGCACCAAACTCAATTCCAAGTAACTAGTAACTGAAGTACCATAACACCAACACTAACCAGTCTTCACTAG ACTCAGATACTTCATTTCTCTTCACACCAGTAACCCCACCAAGCTCACTCAAACCCATTTTCATGGACATCCCCAACCAC AGATTCTTCCAACCTTCATCTGTATTTCTACCACAAGGGGTAATCCAAAGTTCCTTAATATCATGTCTTATAGCTTTAGC TTCAATTGCTTATTTCTGCTGCATTACAAGGTATATCTAATATCTCACTCACTTTTACTCTTTTGTTGTTCAGGATTCAC CCATTGAGAGCTTGTATGGAAAGATCAAAGGCAACAACAACATCATCAACAACAACCCATTTGCAGATACCTTCTCTGAT CCACTTTGCAAGCTCAATCTCAGGGAAACCTCTGAGTTTGTCAAGTCATTTCCAACCTCAAATGGCAATGACTCTGTCTC ACAGCAACAGAGGAGGCTAGAGGCTCCTTCAACCCCTGGCAGACCTGTTTTCAGCTTCAGCTCCAGCATTGGAAGAAACC TTTCAAGGAAGAGCTTCCCTTCCAAATGGGATGATGCAGAGAAATGGCTCATGAGCAGCTCCTGCCATGACTCACCTGCT CACAACACCACCTCCAAGATCAGCAGCACCAGACAACAACAATGTGAGGATGGATTTAAGCAGCTGCAGCAGCAAGTGGA GAGTTTCTCGGAGAAATCGAGGGTCACAGAGGAAAGGGTTTCTTCCAAAGCTGTCCCAACCTTCCAAAGGTCTCCATCTT TGGACCACCATCAAGCACTTGGCGCTTTCAATGGTGTCCCATGTCCTACAGACATAGTACTGAAAGGTGGGATCACAATC TTTTAACTTCAAAATCTAAACTTTACCTTTGCCCTTGTTTGCATTACCCTTATTCTCTTCAATTTACACTTTTTCCCATC ATTATCATTCTTCATCTTTTCTCTTTATAAAATTCCAACCTTTTTGAAAACCTTTTCAAATTTTATAGTTTCATTAGCTT TAAAATTTTGTCTTTTAGCTGCAAATCTATGTGCTAAAATTTGGTGTTTTTCATCTCTAAGTGCATGTTGGAGAACACTT CCACAATTGATTTTAATGTCAAAATCAATTCTGAGAATTTCAACTTCTTTTAGTACCTTGCACTGATGCTGTTGCTACTT CACCATAAATTGATACATCTCTTGTGTAAAAATAGGAAAACCCCCAAATTCCTTATCCCATTTGGAGTTCAAAATTTACT AATATTACAACTCATTGATGTTTTATGAATTGCAATGTAGATAAGTTCACAGACAGTATAGAGCCAATTATGCCGAATTT CAGATATTCAGAGCCAACTAAAGAAGGGTTTTTGTTTAGAAACCCAGCTGGGGAGGCAATGCAGGATGCTTGTACAGAAG TGGTTCATGAGGTTCAACATAGAGATGTTGGGACAGAAATGACTCCTATAGGAAGTTCCACAACTTCAAGATGCCACACC CCATTCAAGAGTTCATCCCCGGCTCGCCACAACACTCCCGCAAGTAGGTCAGGACCATTGGCCTTGGCTAGCCCCAAAAG CACTGGCTGCACTGTTGATGTGATTCAGCTGGAGGAGTGCCACTTTTCTAAACTGCAGCTAGCGACACCGTATGATTTTG TCCCTTCAAATTGGAGCTCAGGTGAGGAGGAAGATAAGGAAATGTCGAAAAGCTTGAGACATAATGCTAGCCAGAAAGCT GACTCAGACTGCATAGCTGCTACATGGGAAGAGGAGGAGAAGACTAAGTGCTGTCTTAGGTAGCTAAACCTTATAGTCGC AGCATATTGTATTTTCATCTGATATGTCTGGCTAGAACTTAATTGTGATTTGGCTTGTTACAGGTATCAAAGAGAAGAAG CAAAAATCCAAGCTTGGATAAACCTACAAAATGCTAAAGCAGAAGCTCAATCAAGAAAGCTTGAGGTATTTCATTGCCAA CTCTTGTGAATTGTTGTTTGAAATGGTTTAGTTAAGCCATCATAGATAATGTTAGATGAAAACATCAATAGTGTGATTTA GTTGACACATGGCAAATAGACGTTAACACTTATTTCGAGATAAAAAGTGAATCAAACACTTCTTATGAATTGTGATTCAA GTCTTGCTCTCTATATTATATTAAATAATAGTATTAGTTTCTATCTTACTTGGCGGCTTTTTTCTTGGTTCTTCAGCAAG CAGTTTGAACTCTTTGTAAGAGCAATTAGTGTGTGATGCACATGGTGAAGCCTGATGTGCTGACCATGTAGAATCCAAGA CGATCTTCTATATGCATATACAATTTTGATTAGTCAATTGTTTTGCCGGGCATGTAGTTGGCTTATTTCCTCGAGCCACC CCCAACTCATAGACACTATTATTTTTATCTTTACCAGTCTCCATTCCACGTCTCAGTCTTTCTCAATCAAATACATATCT TTCTTCATGCGTCCCTCTTAAATCTTAGTTAAAAAAGAGTTTAAAAACTCAGAACTAATAATGTTCCTAATTCTATACTA GGGAGAGCACGTGATCATTACATTTAGGAATCCGTGAGAAACTTGGAGTATCTGAGTTATAGCTAAAATTATGTCAACTT GAAAACAAAACCATGACTGACTACTGCACAATATATGTCACTATGTATATGGTATTTGGAAGATTAAAGCTTGTTTGGAT ATACTATGAAAACATACGGTGAGCCAAAATCCCAGTGTCACAGTAGAGACAGAAGCAACCTCCCTTAGCTTTTGGAGTTG TTTAGCGTGATTTTGGTTTTAATGTGGTCTTCTACCATATATTTATACATGCACTAAAATAATTGCAATTGAATCCATAA TCTTAGTGGTATATTGTGAGTAATGTTAATTTTTCCTTTATGGTTATTGTTTGGTTTTACCTTATCATTGATATTTGATA TGAAGAATTGATAAAGTTTTTAAATATTTTTTGTCTGGATTATAAAAGAAGGCATGAAGCATAGTTTTTTATGTTTCATA GAGTTTAAAAATTGCACAGCTGGACATTGGATTGTAGTTAGGGAATCAATAATACTCTATCCAGACTATAGTAGTAATAA AAAAATCAAGTTGAGACTTGAGAACTTCTAGGCACATTGAAAACACCAATCTACTGGATTACCATGTATTGGGTTTATTC AAAGTTGAAGAATCACATCATTGAAACTAAGCATGTGTTATTGAAAACATTGGTTAGGTGAAAATTCAGAAGATGAGATC AAACCTGGAAGAGAAGCTGATGAAGAGAATGACAGTGGTTCACAGGAAGGCTGAGGAATGGAGGGAAACAGCTAGAGAAA AGCACATGGAGCAAATGCAGAAAGCCGCTCAACATGCTAAAAAGATGGTCCATGGCCATAACTCACAATTTTCTAGGCAC AGTTCATGTGGTTGCTTCCCTTGTAATAACAACCATCATTAAATTTAACAATGGAATGTTATTGCACACTTTTATCTAAC ACTTGGCCTACATGTTTAGTAAATTCCTCACATTTTCAAAAAAGAAAATGTTCTTAACAATTCTAAGAAATGACAGAATT TCAGAGCCACATAGGTAATAAATCCAAGCAAGGGTAACAGTATATCTAACTTCATGGACTGCACAGTAGTTCTGAAACGT GAAAATGACAACAGTGTTTGCTTTGGCTTCTCTTTTTCCTGAAGCTACGATGATTAGACGTGGAGGTATCACCTTAGCTC AAAACACCCACTGTGATGGTTTTTTGTGTCGTTTTCCATTTGTTGGTTCCTATGCTTGTGTCGTTTTGTGGTTGGATTGG AAACTCCAAACGGAAAATGTTCAAACTTTGCAGGTAAACAGTAAAGGGTATCCTCTTTTAGATTTCTTCTGTCGTGACTT TTCGTGAACATGGC
CDS sequence (LotjaGi3g1v0407800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATCCCCAACCACAGATTCTTCCAACCTTCATCTGTATTTCTACCACAAGGGGATTCACCCATTGAGAGCTTGTA TGGAAAGATCAAAGGCAACAACAACATCATCAACAACAACCCATTTGCAGATACCTTCTCTGATCCACTTTGCAAGCTCA ATCTCAGGGAAACCTCTGAGTTTGTCAAGTCATTTCCAACCTCAAATGGCAATGACTCTGTCTCACAGCAACAGAGGAGG CTAGAGGCTCCTTCAACCCCTGGCAGACCTGTTTTCAGCTTCAGCTCCAGCATTGGAAGAAACCTTTCAAGGAAGAGCTT CCCTTCCAAATGGGATGATGCAGAGAAATGGCTCATGAGCAGCTCCTGCCATGACTCACCTGCTCACAACACCACCTCCA AGATCAGCAGCACCAGACAACAACAATGTGAGGATGGATTTAAGCAGCTGCAGCAGCAAGTGGAGAGTTTCTCGGAGAAA TCGAGGGTCACAGAGGAAAGGGTTTCTTCCAAAGCTGTCCCAACCTTCCAAAGGTCTCCATCTTTGGACCACCATCAAGC ACTTGGCGCTTTCAATGGTGTCCCATGTCCTACAGACATAGTACTGAAAGATAAGTTCACAGACAGTATAGAGCCAATTA TGCCGAATTTCAGATATTCAGAGCCAACTAAAGAAGGGTTTTTGTTTAGAAACCCAGCTGGGGAGGCAATGCAGGATGCT TGTACAGAAGTGGTTCATGAGGTTCAACATAGAGATGTTGGGACAGAAATGACTCCTATAGGAAGTTCCACAACTTCAAG ATGCCACACCCCATTCAAGAGTTCATCCCCGGCTCGCCACAACACTCCCGCAAGTAGGTCAGGACCATTGGCCTTGGCTA GCCCCAAAAGCACTGGCTGCACTGTTGATGTGATTCAGCTGGAGGAGTGCCACTTTTCTAAACTGCAGCTAGCGACACCG TATGATTTTGTCCCTTCAAATTGGAGCTCAGGTGAGGAGGAAGATAAGGAAATGTCGAAAAGCTTGAGACATAATGCTAG CCAGAAAGCTGACTCAGACTGCATAGCTGCTACATGGGAAGAGGAGGAGAAGACTAAGTGCTGTCTTAGGTATCAAAGAG AAGAAGCAAAAATCCAAGCTTGGATAAACCTACAAAATGCTAAAGCAGAAGCTCAATCAAGAAAGCTTGAGGTGAAAATT CAGAAGATGAGATCAAACCTGGAAGAGAAGCTGATGAAGAGAATGACAGTGGTTCACAGGAAGGCTGAGGAATGGAGGGA AACAGCTAGAGAAAAGCACATGGAGCAAATGCAGAAAGCCGCTCAACATGCTAAAAAGATGGTCCATGGCCATAACTCAC AATTTTCTAGGCACAGTTCATGTGGTTGCTTCCCTTGTAATAACAACCATCATTAA
Protein sequence (LotjaGi3g1v0407800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIPNHRFFQPSSVFLPQGDSPIESLYGKIKGNNNIINNNPFADTFSDPLCKLNLRETSEFVKSFPTSNGNDSVSQQQRR LEAPSTPGRPVFSFSSSIGRNLSRKSFPSKWDDAEKWLMSSSCHDSPAHNTTSKISSTRQQQCEDGFKQLQQQVESFSEK SRVTEERVSSKAVPTFQRSPSLDHHQALGAFNGVPCPTDIVLKDKFTDSIEPIMPNFRYSEPTKEGFLFRNPAGEAMQDA CTEVVHEVQHRDVGTEMTPIGSSTTSRCHTPFKSSSPARHNTPASRSGPLALASPKSTGCTVDVIQLEECHFSKLQLATP YDFVPSNWSSGEEEDKEMSKSLRHNASQKADSDCIAATWEEEEKTKCCLRYQREEAKIQAWINLQNAKAEAQSRKLEVKI QKMRSNLEEKLMKRMTVVHRKAEEWRETAREKHMEQMQKAAQHAKKMVHGHNSQFSRHSSCGCFPCNNNHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 468 | 463 | 5.9E-177 | – | |
| PANTHER | 6 | 468 | 463 | 5.9E-177 | – | |
| MobiDBLite | 64 | 94 | 31 | - | – | |
| Coils | 147 | 167 | 21 | - | – | |
| MobiDBLite | 256 | 296 | 41 | - | – | |
| MobiDBLite | 256 | 294 | 39 | - | – | |
| Pfam | 356 | 451 | 96 | 3.1E-24 | ||
| Coils | 386 | 413 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0407800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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