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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0408600 |
| Transcript ID | LotjaGi3g1v0408600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transferring glycosyl group transferase, putative; TAIR: AT5G12260.1 transferring glycosyl group transferase; Swiss-Prot: sp|Q2JXG8|MNMG_SYNJA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TrEMBL-Plants: tr|G7L963|G7L963_MEDTR Transferring glycosyl group transferase, putative; Found in the gene: LotjaGi3g1v0408600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81219219..81222578) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCATCAAAATTGGGTAAGAAAATCGATAGTAACTAACAAAGTGTTGGTTCAGTTAGTACAAAATGACTAATTACACT TTTAGTCCCTAGAGTTTCAGGAATACGCAACCTTGGTTCATATAGGCGTCGTTTCACTACTCCGTTGTCGTTGCTATCTT CTTCACTGTGACTCTGTGAGATCTCTCTCGTTTCAGTGAGATCCATGATCGTCTTCTTCTGCAAAACCCTAACCTGCAAA TGTTCTGCATCAATCTTCTCCATCTGAAAACCCTTACCAATGGTGGGACCCAAAAGGCACATCCTCCCACTGATCCTCAT CTCCCTCGCCGCATTCATCTTCTACACCTTCCACCAATCTTCACTCCCATCTTCAATCCCAGAATCAAACCCTAATTTTA CCCTCCAGAACCCAATTCCAAACCCTACCCCCATTTCCCCCACCAACAATTTCACTTTCGTCATCAAACTCCTCGCATAT AACCGCCTCGACTCCGTCACCCGCTGCCTCCGATCCCTCGCCGCCGCTGATTACCTCGGCGACCGCGTTCACCTCCACAT CTACATTGACCATTTTGTCCTTTCCGACGATGCGTCCTCTGTGGATCAGAAGCTGCGCGATTCGCATCGCATTGTGGAGT ATGTTGATGGGTTTGATTGGAGATTTGGTGAAAAGGTGGTGCATTACAGGACTGGCAATGTGGGCTTGCAGGCACAGTGG TTGGAGGCGTGGTGGCCCGGTTCCGATGACGAGTTTGCCTTTGTGGTGGAGGATGATTTGGAGGTTTCGTCGCTTTACTA TGAGTTTGTTAAGAGCTTGATTGTGAATTTCTATTACAATGCTTCTAATTATAGCCCTTTCATCTTTGGAGCTACGTTGC AACGAGCAAGGTTTGTCCCAGGTACCATTTTCTTTGGTTATGTATTTATTTTCGCTTTATAGTATGTTACTTGATTGATG GTAGCTAGTGAAGTTTAGACTTAAGAAGAATCTGGTTCATGGTTACTTCATGGATGAACAATAACAGGTTTTGTAGTTTG TTGCCAGTACTACTTGTAAGCTTAGTTATCGATAGCGGCGCCGTCTCGTAGCGTGTTGCGGCTGTGAAATCCCGCTATTC GCGGCCAATAGGCCTTCCCTTGTATGGGATTTCATCTTTGGGGGTCATCCGCGACAGGCCGCGATCCGCCATTGACTACT ATGCTTGTAAGAGAGATTAGAGATATAATATAAATAGATTTCAAGGATGGTTCTATTAGTGAGCATTCAATGAGATGTTT CATGTATGCTTTAGCTAGTTGTCTATTTGAGATGAATATAGCAGGAGCTGTCTTAGCATTTTTAGATTCTGCAAATGTTA CATGGGGCTAGAATCTGCAAATATATACTGTTTCGTATGTTTTGGATCCTCAGATTGTCCTGGTTAATGGATCCCCACAT TGATGACTGTTTTTTGTAGGATAAGAAGTTGGTTTGATGAAAATTTATGTTTTATTTTTTTTAGTGTGTTTTATAATGAT TTGAAAACGGATATGACAAAGTAGAGAATGGTGGAATCTCTTTGTTAAAGAACTTTAAGTGATTTTCCTCTTTTATTGTG TGTTATTCGTTATCTTAGTGATTGTACTGTGCTGATTCATTACTTGTATACAATTTATTGATGATATTATTGGTTTCTGG CTTGCAGGTAAACATGGAAACAAATTACAACTGGATGACCAGACGCGGCTTTTCTTATACCAATTGGTTGGTACTTGGGG TCAGATTCTCTTTCCAAAGCCATGGAAAGAGTTCAGGTTGTGGTATGACAAAAACAAGGCGAAGGGCATTAAGCCATTTC TTGAGGGGATGGTGATCATTTTATTTTGACAAAAAATGTTTATTGATCTTCACTCTTATCCTATTTTCACTTTTGTTGAA TTTTATACAACAACAATTCAGTTCATCCTAATTTTAGTTCTTATTTTTGTCCAGGTGACAACAGGATGGTACAAGAAAAT GGGGGAGAGAATTTGGACACCTTGGTTCATTAAGTTTATTCAATCCCGTGGTTACTTTAATATCTATGCTAATTTTTTGC ATGAGAGAGCATTAAGTGTCTCTCACAGAGATGCTGGAGTAAACTATGGGAAAACTGCTGGACCTGATTCTCAATTACTA GAGGAAAGATCTCTGGACTTCAATATTTTGGAAATGCAGCCTTTGAGTAGTTTAAAATGGTTTGATTTTTGTTTCAGAGA AGTTCTTCCCGGAAAGGTTGTCAAGAACCTGGAAGAACTTGGAGCTTTGCTGCACACTCTGCAGCAACAGAATAGTATCT TCTTGGTAAATCTTATTGGAGTTTCAGATGCTGTAGCAAGAAATCTACTATGCCACTTTGAGAGGCTAAATATCAGGAAT TACATACTTATGGCCCCCCAATCTGACTCCTTATTTGATCTAGCAAGGAGGGGACATCCTGTAATTAATGTGGACCAATT TATAAGTAGTGTTGGATTGCACAAACTGACTTCGCAAGGTTCGAGATTTGAGACTATCAAGGGTATTTTGGCAAAGGCTT ATGTAATTAAAAAGTGTATCGAGAATATGTATAACACATGGGTTATTGAAGGGAGCATGCTTCTCACATCTGACCTCATG CTTGAGAACGGAGATCTCAAAGATGATTTCTCTATTGCAAACAACTTGGAACTTTTTTATGCTAGAAGTTCATCTTCTAG TAAGAAAATCTGGACCACCGACTTTGTGTCAAAGGTAGTAGCCATGGCAGACTCTTTGTCAGGTAAAGATTCAGCATCTC ATGATAGCCTGAGTTTTGTGCATGTTGTGACAACGTTATTGGAACAAAATGGTGCAAGGATTAGGAGAGTTGATGAGACT TCTTTTGGCTTGAAGATTGGGTCCGGTAATGTTAGTAAATCTTCTCTAGGGGATAAGAAGTTTGTATATTGGTCAACTGA AATGGAGATGGACTCAATTCAGAAACGGCTCGAAGAGTTGAATTTGTGGGGTATAGACAGTGATTTATCGTGTACTGCTG TTGTTTGTCACAGCTCATAGCATTTTGATGCAGCTAGAAGTAGTTATACATTTTCTTTTTCCTTTCCTTTCTATATTATT TCTGAGTTCTGTTTATGCCAATTAAGCTTACATATTCTTTTTACTCATTTTGTATTATCATTTGTAACAAAATTAAGTGG TAAATGTGTACCCTCTCCCCAACACAATGTGAGGCTTCAGTGGGCTGAAATTAAACATTCTAGAGTTGAATTTCCTCTCG TCATTGAACTGTTTGCTTTTGGTGTTACCTCCCACTACAATCTATATCCTGTGCCTTCGGCAATCGTTTTTCGGTTCCTT
CDS sequence (LotjaGi3g1v0408600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTATTGATCTTCACTCTTATCCTATTTTCACTTTTGTTGAATTTTATACAACAACAATTCAGTTCATCCTAATTTT AGTTCTTATTTTTGTCCAGGTGACAACAGGATGGTACAAGAAAATGGGGGAGAGAATTTGGACACCTTGGTTCATTAAGT TTATTCAATCCCGTGGTTACTTTAATATCTATGCTAATTTTTTGCATGAGAGAGCATTAAGTGTCTCTCACAGAGATGCT GGAGTAAACTATGGGAAAACTGCTGGACCTGATTCTCAATTACTAGAGGAAAGATCTCTGGACTTCAATATTTTGGAAAT GCAGCCTTTGAGTAGTTTAAAATGGTTTGATTTTTGTTTCAGAGAAGTTCTTCCCGGAAAGGTTGTCAAGAACCTGGAAG AACTTGGAGCTTTGCTGCACACTCTGCAGCAACAGAATAGTATCTTCTTGGTAAATCTTATTGGAGTTTCAGATGCTGTA GCAAGAAATCTACTATGCCACTTTGAGAGGCTAAATATCAGGAATTACATACTTATGGCCCCCCAATCTGACTCCTTATT TGATCTAGCAAGGAGGGGACATCCTGTAATTAATGTGGACCAATTTATAAGTAGTGTTGGATTGCACAAACTGACTTCGC AAGGTTCGAGATTTGAGACTATCAAGGGTATTTTGGCAAAGGCTTATGTAATTAAAAAGTGTATCGAGAATATGTATAAC ACATGGGTTATTGAAGGGAGCATGCTTCTCACATCTGACCTCATGCTTGAGAACGGAGATCTCAAAGATGATTTCTCTAT TGCAAACAACTTGGAACTTTTTTATGCTAGAAGTTCATCTTCTAGTAAGAAAATCTGGACCACCGACTTTGTGTCAAAGG TAGTAGCCATGGCAGACTCTTTGTCAGGTAAAGATTCAGCATCTCATGATAGCCTGAGTTTTGTGCATGTTGTGACAACG TTATTGGAACAAAATGGTGCAAGGATTAGGAGAGTTGATGAGACTTCTTTTGGCTTGAAGATTGGGTCCGGTAATGTTAG TAAATCTTCTCTAGGGGATAAGAAGTTTGTATATTGGTCAACTGAAATGGAGATGGACTCAATTCAGAAACGGCTCGAAG AGTTGAATTTGTGGGGTATAGACAGTGATTTATCGTGTACTGCTGTTGTTTGTCACAGCTCATAG
Protein sequence (LotjaGi3g1v0408600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFIDLHSYPIFTFVEFYTTTIQFILILVLIFVQVTTGWYKKMGERIWTPWFIKFIQSRGYFNIYANFLHERALSVSHRDA GVNYGKTAGPDSQLLEERSLDFNILEMQPLSSLKWFDFCFREVLPGKVVKNLEELGALLHTLQQQNSIFLVNLIGVSDAV ARNLLCHFERLNIRNYILMAPQSDSLFDLARRGHPVINVDQFISSVGLHKLTSQGSRFETIKGILAKAYVIKKCIENMYN TWVIEGSMLLTSDLMLENGDLKDDFSIANNLELFYARSSSSSKKIWTTDFVSKVVAMADSLSGKDSASHDSLSFVHVVTT LLEQNGARIRRVDETSFGLKIGSGNVSKSSLGDKKFVYWSTEMEMDSIQKRLEELNLWGIDSDLSCTAVVCHSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 20 | 39 | 20 | - | – | |
| PANTHER | 34 | 393 | 360 | 2.4E-138 | – | |
| PANTHER | 34 | 393 | 360 | 2.4E-138 | – | |
| Phobius | 40 | 394 | 355 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0408600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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