Transcript — View — Lotus Base

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LotjaGi3g1v0408700.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0408700
Transcript ID	LotjaGi3g1v0408700.1
Lotus japonicus genome version	Gifu v1.2
Description	Methylthioribose-1-phosphate isomerase; TAIR: AT1G53900.3 Eukaryotic translation initiation factor 2B (eIF-2B) family protein; Swiss-Prot: sp\|Q54I81\|EI2BA_DICDI Translation initiation factor eIF-2B subunit alpha; TrEMBL-Plants: tr\|G7L962\|G7L962_MEDTR Translation initiation factor eIF-2B protein; Found in the gene: LotjaGi3g1v0408700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:81223377..81225862) extracted from Lotus japonicus Gifu genome v1.2.

TCTTAATAACATATGGAGCTTGTTTAAAAAATAAAGAAACTCAACTTTAAGTCTTTAACTCATTTCCATTTAATGATTGA TATTAGGAAAGAGGCTTCAAGTAACCAATTATTTTTGTTTCCATCATAAAACAAAATTATATTCTTGCGTTACTCTTCTG ATACACGAAATTGGGGAAGAGGGATCGTCGAACCAAAACGACGACGCATTGAAGCTCGCTCGGTGGTGCTTCAATGGAGA ATCGCGACGTATCAGCGTACTACCAGAACAGAATGGCGCACTTCGGCGTCGTCAGCGACGAGTGGCTCGCTCAGGCCGAG TCCGCCATCGTCCCCTCCAACACCCCCGCCGCCCCCTCCCACACCGCCGCTGATTCCAATTTCTCCGTGATCGACGAGTT CAACAAGTGGCGGAGAAACCCCGATTTGGCTGAGGCCGTCGCCGCCATTCGCGCCCTCGCCGCTGTCATCAGCTCCAGCA AGGCCTCCACCATAGTGCACCTCGCAAACGAGCTCAAGAACGCCTCCGATTCCCTCAAAGTAACCTTACTCTCTATTTCT CTGATTAATCAACGCTTTTTTGTTTGTTAATTTGTAATTAACTGTGCTCACTTCTTAGAAATGATCTTAATCTCGCAAAT TGCAATAAAATTGTTGAAACTAAGCTAGATTGAATGAATGATAATCATGATGATTGATAACAACTAGGGTCATGCATGTT AGAGTAATCATGTAATGTGAGAAAGAAGAAAATGGGTAGTGGCATTTTTTTTCTTTCTTGTTTTTGAATTGTGAATTGAT TGGTTTGTTAACTTGAATGAGGGTTTTGCAGTCATCGGATACGACCTCGATCTCGTTGACAGCAGCATGTGATTTGTTTA TGAGATATGTGACAAGGACTTCTGCTTTGGAATATGAAAACTTCAATTCGGCAAAATCGCGTTTGATTGAGCGCGCTGAA AAGTTTGGGGAAATCTCCCTCAAGGTAGTGGCATCCCGCATCCATCCATGCTATCTACTTGGTTTGGTTGTTCAGTTAGT TAGTTAGTTAGTTGGTTAGCTGTCTGAATTGATTTGTTTTTGCAGGCTCGCAAGATTATTGCAATGCTGGGCCAAGATTT TATATTTGATGGTTGTACGATCTTGGTTCATGGTTTCTCTAGAGTTGTCTTTGAACTTCTCAAACTGGCTGCGCAGAATA AGAAGCTGTTCCGGGTCCTCTGCACTGGTTTTCCTCTCTAACTCTGATTACTGATTAGTTTGTATTGTTGTTGGAAATTC AAGTGTGAGTGATAAGTTTTGTATTAGCTGTGAATAGCATCAATAAGGACACAATTAGTGGAAATACACTTATGCTTGTT GTTGCTGTTGTTCTTGTGGCTTGTATTGCTTAGTCCGTTGATAGAAATCTTCTTAGTGTTGTTTTAATTTCATGGTAATT GACCTTTTCCTCTTCAATATAGTGTTATAAAAATATTCTTTCCAGTGTTTAGACGTTTTGTGCTGGAGAGTTTGAATCAT GTTTTGTAATTCTATTTGTGCATTGAAGGTGGGCTTTAAGCTTTGTGTCACTTTGATTTCTTGATCATCTCATTTTAAAC TAAGGTGTGAGTCTGAATCTTTGTTGTTTTAATCGTTAGCAGTTTGTGGTTCCGACTTTGTAACTGTGTTCTACATGAAT TTGCAGAGGGGAGACCAGACCGGACAGGTTTAAGGTTGTCCAGTGAGCTGGCCAAGCTTGATGTTCCTGTGAAACTGGTA ATAGACTCTGCAGTGGCATATACAATGGATGAGGTGGACATGGTATTATTTGGGGCAGATGGAGTTGTTGAAAGTGGTGG TATAATCAACATGATGGGGACTTACCAGATTGCTTTGGTTGCAAAGTGTTTGGATAAGCCAGTTTATGTGGCTGCTGAGA GTTACAAGGTGTATTTGCAACTTATGATGTTAATCTAGTACTTCAGTAATTACCTTAGAATGCTTGCATTAATTAGAAAT AGACCTTGTATAATTACATATTATGTATGTGTTCCTCTGCAGTTTGCTCGGCTTTACCCTCTCGATCAAAAGGATTTGGA ACCTGCGTTACGCCCAGTTGATTTTGGCGTTCCTATTCCGTCCAAGGTTGAGGTTGAATGCTCTGCCCGGGATTATACTC CTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCTGTTGTTAGTGATGAGCTCATCCAGCTA TACTTGTAGTCACCTGTGTAACAATTTTGCTCTGATTCTTGTAAAAGGTTGGCCTGAGTTCAAGGTTGTGTATCTTAGGA AACAATTTTGTAATAAGTATGTGCATTAGCAACCTGTGATTGTGGATAGTTCTTGTTGTACTTGTTGAGCTTAAGTCTCT AAAGGCTTGTTTGCAAAAATGTTTCATATTTTCATTTGTCATTTTCAATCAAATAAAATATTATCTTGCTCTTTTTTCTA ATAAAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0408700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAATCGCGACGTATCAGCGTACTACCAGAACAGAATGGCGCACTTCGGCGTCGTCAGCGACGAGTGGCTCGCTCA GGCCGAGTCCGCCATCGTCCCCTCCAACACCCCCGCCGCCCCCTCCCACACCGCCGCTGATTCCAATTTCTCCGTGATCG ACGAGTTCAACAAGTGGCGGAGAAACCCCGATTTGGCTGAGGCCGTCGCCGCCATTCGCGCCCTCGCCGCTGTCATCAGC TCCAGCAAGGCCTCCACCATAGTGCACCTCGCAAACGAGCTCAAGAACGCCTCCGATTCCCTCAAATCATCGGATACGAC CTCGATCTCGTTGACAGCAGCATGTGATTTGTTTATGAGATATGTGACAAGGACTTCTGCTTTGGAATATGAAAACTTCA ATTCGGCAAAATCGCGTTTGATTGAGCGCGCTGAAAAGTTTGGGGAAATCTCCCTCAAGGCTCGCAAGATTATTGCAATG CTGGGCCAAGATTTTATATTTGATGGTTGTACGATCTTGGTTCATGGTTTCTCTAGAGTTGTCTTTGAACTTCTCAAACT GGCTGCGCAGAATAAGAAGCTGTTCCGGGTCCTCTGCACTGAGGGGAGACCAGACCGGACAGGTTTAAGGTTGTCCAGTG AGCTGGCCAAGCTTGATGTTCCTGTGAAACTGGTAATAGACTCTGCAGTGGCATATACAATGGATGAGGTGGACATGGTA TTATTTGGGGCAGATGGAGTTGTTGAAAGTGGTGGTATAATCAACATGATGGGGACTTACCAGATTGCTTTGGTTGCAAA GTGTTTGGATAAGCCAGTTTATGTGGCTGCTGAGAGTTACAAGTTTGCTCGGCTTTACCCTCTCGATCAAAAGGATTTGG AACCTGCGTTACGCCCAGTTGATTTTGGCGTTCCTATTCCGTCCAAGGTTGAGGTTGAATGCTCTGCCCGGGATTATACT CCTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCTGTTGTTAGTGATGAGCTCATCCAGCT ATACTTGTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0408700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENRDVSAYYQNRMAHFGVVSDEWLAQAESAIVPSNTPAAPSHTAADSNFSVIDEFNKWRRNPDLAEAVAAIRALAAVIS SSKASTIVHLANELKNASDSLKSSDTTSISLTAACDLFMRYVTRTSALEYENFNSAKSRLIERAEKFGEISLKARKIIAM LGQDFIFDGCTILVHGFSRVVFELLKLAAQNKKLFRVLCTEGRPDRTGLRLSSELAKLDVPVKLVIDSAVAYTMDEVDMV LFGADGVVESGGIINMMGTYQIALVAKCLDKPVYVAAESYKFARLYPLDQKDLEPALRPVDFGVPIPSKVEVECSARDYT PPQYLTLLFTDLGVLTPSVVSDELIQLYL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR45860:SF4 View details on PTHR45860:SF4 Search for proteins/transripts with this domain View external data on PTHR45860:SF4	5	349	345	5.4E-211	–
PANTHER	PTHR45860 View details on PTHR45860 Search for proteins/transripts with this domain View external data on PTHR45860	5	349	345	5.4E-211	–
Gene3D	G3DSA:1.20.120.1070 View details on G3DSA:1.20.120.1070 Search for proteins/transripts with this domain View external data on G3DSA:1.20.120.1070	47	150	104	2.1E-28	IPR042528 Show description in modal box View details on IPR042528 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01008 View details on PF01008 Search for proteins/transripts with this domain View external data on PF01008	65	337	273	1.9E-66	IPR000649 Show description in modal box View details on IPR000649 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF100950 View details on SSF100950 Search for proteins/transripts with this domain View external data on SSF100950	65	348	284	1.3E-77	IPR037171 Show description in modal box View details on IPR037171 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.10470 View details on G3DSA:3.40.50.10470 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.10470	153	349	197	8.3E-68	IPR042529 Show description in modal box View details on IPR042529 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0044237 View details of GO:0044237 AmiGO InterPro QuickGO	Biological process	Cellular metabolic process	The chemical reactions and pathways by which individual cells transform chemical substances.	Subterm of View details of GO:0008152 View details of GO:0009987

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0408700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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