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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0411700 |
| Transcript ID | LotjaGi3g1v0411700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G17370.1 oligouridylate binding protein 1B; Swiss-Prot: sp|Q9LQI9|UBP1B_ARATH Oligouridylate-binding protein 1B; TrEMBL-Plants: tr|A0A151S6P1|A0A151S6P1_CAJCA Nucleolysin TIAR; Found in the gene: LotjaGi3g1v0411700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81558343..81564509) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTGATGAGATGTGCAGAATTCACAAGAACACCATGATTTGACCAAAACAAATAAATTAATAAAAAAAACACAAGTAC AGTGTGAGATTATCATTTAAAATATAGAAGAAAAAAAACCACTTTCTTAGTTTCTTTTATAAATAGTGACAAAGGGGTTT TGCGTGGAGTCCTCTGGTTTTCTCTGAGGCTCTGCTCTGAGAGGGTCATTGTGTTTGGGGACCCTTTGAACCCTAATCTC CAACCAAACCCATTTTCCTGGAAAATCAAACACAACAAGCAGGAAAATGCAGAATCACAGGTTGAAGCAGCAGCAACAGC AAGCTCTTATGCAGCAAGCGCTTCTCCAACAGCAATCTCTCTACCACCCTGGTCTCCTTGCTCCTCCTCAGGTAAAAAAT TTCCCTCCCTCACTCATTTCCCATTGTTTCTTCGATCTTCTTCTGTTTTCTCGTTCTCCGGTGGTGTTGATCTTCATGCC TTGCCTTTTGTCTATCTGGGTTTGACTGGAAATCATAGGGTTTGTTGCAAAAATGCAAACTTTTAGGAAAATTAGGAACT GGGTGTGTGTTTGATTTTTGTTTTCTGGTGGGGAATTTTTTATTTATTCGGGTTTTGAAATGGTTTGTTTCTGCTGATTT TTTAGTTTTTGGTTGATATCTATGTGTTTTGGTGTTTGGTTTTGTGGAAAGATTGAATTTTTAGGTTAGATTGTAGCTTT TATTAGTTATGGTGAGGCATGGTTCTGTGTTTTGTTATCACTGTACCTGTAAATTTTCGGTCGGTTTCGCCACAAAAGCA TGTGTTTTTGTTAAGTGGATGTTTTGGGTTGCATTTTTCTTTTGAAGGCATCTACTTGAATTTTTCTGCATTGTGAAAAA TCTTGTGCTTCTGTTTTGGCTTTTTGCAGTGGTTAATGGCTTTAAAATTATGTTAAGCCATTTATAACTGTGAACCAAGC TTTGAAGTAATGACACATAGGCCCTCTCATAGTGTCTTAAGTAGTTTGAATATAGCATTAATCTAAACTAGGAAAGTATA TTACTAATGCTACTTCTTTTCCTCTTATGTTGCCTTTTCTGCTTTGGAGTTAAGTTGTGGAAGAGAATTGTGGTTGTATG AGTTTGCAATTTCTTAAGCTGTATCGTTTTCCTGGAGGTTTGGTTGGGAAAGGAATCTACATGTTAGGAGTTATAGTCTG GTGTGTTTGATGCAGAAGTCTTATAGGATTTTCTGTTTCCCTCACTGCTTCAGTTTAATTTGTAGTTTGCTCATGTTTTA GAAGTGAAGGGTGGGCAGAATTCATTTTCAACAACTTCTGTTAGGCTGAACACTTGTATGCATTTTTGTTTTGCATTGTT TGGGTTGTATCTTTCTTCCTCCCCATCCACCCTAGTAAATGTATTTCATGCCACTGTATAGTGTATTGGTAGATACAATA CAATTTCTCTACCTTGATTTGCCCCCTTTTCCTTTATTTTATTTTCTTTTTCACATTTTGATTTTTGCAGATTGAACCAA TCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTGAGTGTTTGTCTAGACATTTTTTTAT CTTTTACTTTTCTATTTTAAATCTCATATTTCTCTGCTTGCTTTAAGTTTGTGATTTAAACATGTTTAGGCACTTTTACA TTAATTTTACCATTTATTTATGAGATTAATTTCTATGCACCGACGGTGTAAATAAGTTTTACACCATCATTCAATCACAT CCCTCCATTTTGTTTTCTCACAATTAATTTTGAATTTAATAATATCTAAAATAGAAAATAGAAGGTTGTGATTGAATGAT GGTGTAAAACTTTTTACACCGTCAGTGCATAGAAATTAATCTCTTTATTTATTTTCTCTTTTTTCTAATATCAATAGGCA TTAAATGCATTTGAGTTGTTGATCTTTGGTATCTTACTTAAGTAGATATATTGTCATGCTTACAGCCAATTCTGTTGCAC CAAAACATTACATGTCTGTTACATCTTGCTTTTGTGACTTTCAGTGTTTGTACCCTAATTATTTTTTTGTTTCTTGTCTT CTTTTTTTAAATTGTAGCTTCTTTTTCTTTAATAAAATGCAGGTATGTGGGGAACATCCACACACAGGTAACTGAGCTGC TTTTGCAAGAAGTTTTTGCAGGTACAGGCCCTGTTGAAGGTTGTAAACTTTTCAGAAAGGAGAAGGTATGTCTCTAATAT GGTTATGTCTTGGTCTGGTTATAATTTATTAACTTAAAGTGCTAGCTGAAACTGGAGATTTATATTTAACATCTTGTGCC TCTGTTATGCAGTCATCCTATGGATTCATTCATTACTTCGATCGTAGATCTGCTGCTCTTGCCATATTAACTCTCAATGG GAGGCATCTGTAAGGGCATTTCTTTTCAACTGTGTTAGATTGGTTTTGATTTGTACTCAAATTTTAATTCAATACTTTAC AGATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAAGATACATCAGGTTGGTCCAGAGTTAG ATATATAGATATTTATGTTTGAACAAAATTTGTGGCTTGTGGCCCTTTAGGAATTTTTAACAAAGATACTATGATAATGT ATATTACTTCAATTTGCAGGACACTACAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACGCTGTTTGC ATGCTTTTCTGTCTACCCCAGTTGTTCGTAAGTTTCATTCTCTTATGATTTCTCTGTAAAACAGCTATTTTACCCATTTT TTGCATTTGGAATTGGATTAATCTTCATTTCTCGAAATGGAGGAAAAATGTTTGTGCTACCTCGTGTGATAAGTATACAT TGCATGCTGTCATTTTCTGGGTGACTTTGCATGGTTAACCAAATTTATCTTTCTGACGCTACAGTGATGCAAGGGTTATG TGGGATCAGAAGACTGGGCGTTCGAGGGGATTTGGATTTGTTTCATTTCGTAGTCAACAGGTCTAATTTTGTTTTAAAAA GCTTTTTTTGTTGGCTGTTTAAGTGCTCTCTATGATGTTTTTGACTTCAATATTCCTGGACTTTCTTGCAGGACGCACAA AGTGCTATTAATGATTTGACTGGTAAGAAACTTGTCCTGGCTTACCAACCTTTTAGCTTTGAGCCACTTTATCAAAATTA TTTAATGCCAAAGATCTTTCTTACTTGATGTCAGTTGAAACAAAAATAGTCTCTTATTGATGTTAGCTTTATATGTTGCT TAGTTACTTTAAGATTCAAAATGAAATATTGTCCTATAGACTTCTCGGGAAGTTTCACCTCCAATGTATGCAATTCAAAT TGATTCTAGGAGGCTCATGTTTTTTTTCCTGTCCTTCTGTACTTCCTGTATGATCAAGGCGTAACGATGCCCTGCCTTTT TCTTTCAGGAAAGTGGCTTGGAAGTAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGGTGGCAATGAAGAAAAGC AAAACTCAGACACCAAAAGTGTGGTAGAACTAACTAATGGTTCATCTGGTTAGTAGATTGTACTGTAGTTCCTGAAATGA CTGTGGATATGGTTAATTTAAACATTTAGCTTCTATAATTCTTGATTTAAAGGTGGATCCGAGTGCTTCAAATGTTCTGT CACCATTTTTTATCTTTTGATCCATAAAGAATTATAGACGATTGAACTTGTAAAAGTCTTTCAGTTTGCAAAGTATTCTG TTTTCCTAGTCAACAGATGGAACTAACGAACATATTTTATCCTTGGACAGAAGATGGTAAAGAAATATCTAACAGTGATG CTCCTGAGAACAATCCTCAATATACTACTGTTTATGTGGGTAACCTTGGTTCAGAGGTAAGAAACTTTCTTTATCTCTAT ATTTCAATTTTTGGGGGTAAGAAAAAAAAGCAACCGCTACTCTGATGAAAAATTTTCAACCTTATTGTGATGCGATTGTG ACTAATTTGTAGTCCACAACTAATATTTCCGTTGCTGAAACTTTACCTCGTTTATCTTATTGTTTAATTCTCTTCCTCTC TTTGGCCATTTGGTTAGAGATCTAAGAGTACTTTTGCTTCAAAAAAAATCTTCTGATAGAATAAAATATGCCATGTTTAT TTGTTAGCTGTATTTTTTAATCCTGCTGAAATTTCCGTTGTTATTTTAATCATCATTACCTTTTGGTGATTCTGCAGGCA ACACAGCTCGATCTCCATCGCCACTTCCATGCTCTTGGAGCTGGAGTAGTAGAGGAGGTTCGTGTCCAGCGTGACAAAGG GTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTAGCTATTCAGATGGGGAATACTCAGTCTATTCTCTGTG GCAAACAAATTAAGGTGTGGCTTTCACCTTCTGATGTGATCGTTAATAACTACATAATGTATCTATTCTTTCTTGTGATT AATATTGTTGTTGTATTTTCCCTGGCTCTGGACTTAAGAGCTGTCAGCACTTCTTGTTTTGTTTTGTTGTTTGGGGGAAG GTTGGGTGTTGCGGTGTTGGCTTTTTTCTGTTTTTCATCACTTGTGCTCAGTAGGTGGAATATATAAGAACGAAAGTTTG ATTGGTGGTTGGTATGCTACTCATGCTATAATTTTCAGCTTTAATCTTACCACTAGAGAAGGGGTTTGAAATTTGTGCAG TGTCATTGTGTATTTGAAAGCAATTCTTTTTCTTGGTTTATATGCTCCTTTTTCTACTATTGAATTTGAACTGGTGGGTG AGCACATTTGAGATTCTGGCGTTGCCTTGTTGTATATTATGGATTCTTGCATAGTATTTTGTTAAATATTGGGAGCTATG ATGCTCAATCTGTTTTTAATAGTTCATTTCCTTTGAACTGTTTTTTTTTTCACTCATTTATATTATTTGTTTCTATCTTC ACAATATTCTTCGTATATCCACTCCTATTCATTTCTATCACGTGCAAAATTTTATTTCCATAGGCTATCTGTTGGACTGT AATTCTAACTGCAGTTATATGTTAAATATAGTGCTCATGGGGCAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTC TTCCCCCACCTGCTCCTGCAACTCTGCCTGGCTTCTCTGCGACTGATCTTCTGGCGTATGAGCGACAGCTAGCAATGAGC AAGATGGGTGGTGTCCATGCCTTGATGCACCCCCAAGGGCAGCACCCTCTTAAACAGGCAGCAATTGGAGCGAGCCAGGC GATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTGATTATACTGAGGTTCTCTTG ATGTGGTTTAATGCTATGTCTGCCTATCTATATGTCCTGCCATGTGCACATTGTTGATTGGTATTAAACTCTAGGGAGGT CTTTCTTTTTTTTACTCAAGGGTGGTGAGGTAGTTACCCCCACCATATTTAGAGAATATGATTGAACATTTGTATGCGTC TGTATCATGTATTTTATGCGGTTTTTCTATTCAATAGTGGTGAGTGCCCATGATTATAACTTATAAGAGAGGATGTCTAT CGACATATTTTTCTTCCTCCTTCACCCATTTGGGTGTGTCGTTATGGTCATTATCATCCTGTTAAGTGGCTCTAGGAATA ATCAAAGACCTCGTCAAATCAATCATTCAAAGGGAACATATTAATGACATTCCACTGAAGTCCTGAATTGATTTCCAACT CTTACCTCCTTGCGTACAATTGGAATTATCTTGTTGAGTTTCTCATAAACTACCACAATGTGTTTGTTTATAACTTACAG AATCTGTTGCATTGCATGCGAAAGTGGGATTACACATTTTGAGGGAGCAAACGTTTGAGGTTTGTGGTTCTTTTTGCTTT TAATGCAACTACATCCTTAAAAAATTAAGGGGCGCAATACTGAACCAAATTGTCACATATTTTAGTTCATCTTCTATTAG GATGTGTTTCACAATGTTGGAATCACTTGGTGCTTACACATTGTCTCTACTAGGAGAACATTTTCCGTTCTCAATTTAAT TTTAATAAATGAAGAGGCTAAAAGCCCAAAACTACTCCGTTAAATAAAAGGTGTTACAATAATCAAATATAAAAAGATCT GAGCAAA
CDS sequence (LotjaGi3g1v0411700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAATCACAGGTTGAAGCAGCAGCAACAGCAAGCTCTTATGCAGCAAGCGCTTCTCCAACAGCAATCTCTCTACCA CCCTGGTCTCCTTGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCC GCAGTGTGTATGTGGGGAACATCCACACACAGGTAACTGAGCTGCTTTTGCAAGAAGTTTTTGCAGGTACAGGCCCTGTT GAAGGTTGTAAACTTTTCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTCGATCGTAGATCTGCTGCTCTTGC CATATTAACTCTCAATGGGAGGCATCTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAAG ATACATCAGGACACTACAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCT GTCTACCCCAGTTGTTCTGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCGAGGGGATTTGGATTTGTTTCATT TCGTAGTCAACAGGACGCACAAAGTGCTATTAATGATTTGACTGGAAAGTGGCTTGGAAGTAGACAAATACGCTGCAATT GGGCAACAAAAGGTGCTGGTGGCAATGAAGAAAAGCAAAACTCAGACACCAAAAGTGTGGTAGAACTAACTAATGGTTCA TCTGAAGATGGTAAAGAAATATCTAACAGTGATGCTCCTGAGAACAATCCTCAATATACTACTGTTTATGTGGGTAACCT TGGTTCAGAGGCAACACAGCTCGATCTCCATCGCCACTTCCATGCTCTTGGAGCTGGAGTAGTAGAGGAGGTTCGTGTCC AGCGTGACAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTAGCTATTCAGATGGGGAATACTCAG TCTATTCTCTGTGGCAAACAAATTAAGTGCTCATGGGGCAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCC CCCACCTGCTCCTGCAACTCTGCCTGGCTTCTCTGCGACTGATCTTCTGGCGTATGAGCGACAGCTAGCAATGAGCAAGA TGGGTGGTGTCCATGCCTTGATGCACCCCCAAGGGCAGCACCCTCTTAAACAGGCAGCAATTGGAGCGAGCCAGGCGATA TATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTGA
Protein sequence (LotjaGi3g1v0411700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQNHRLKQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPV EGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFS VYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGS SEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVVEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQ SILCGKQIKCSWGSKPTPPGTASNPLPPPAPATLPGFSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAI YDGGFQNVAAAQQMMYYQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 378 | 378 | 6.2E-228 | – | |
| Gene3D | 1 | 135 | 135 | 1.8E-22 | ||
| PANTHER | 1 | 378 | 378 | 6.2E-228 | – | |
| SUPERFAMILY | 38 | 132 | 95 | 1.32E-22 | ||
| ProSiteProfiles | 54 | 128 | 75 | 14.471 | ||
| SMART | 55 | 124 | 70 | 5.6E-16 | ||
| CDD | 56 | 126 | 71 | 8.17426E-36 | – | |
| Pfam | 56 | 122 | 67 | 2.0E-12 | ||
| SUPERFAMILY | 133 | 223 | 91 | 7.79E-27 | ||
| Gene3D | 136 | 237 | 102 | 6.4E-24 | ||
| ProSiteProfiles | 139 | 217 | 79 | 17.216 | ||
| CDD | 140 | 214 | 75 | 3.39991E-53 | – | |
| SMART | 140 | 213 | 74 | 1.4E-23 | ||
| Pfam | 141 | 211 | 71 | 9.2E-19 | ||
| MobiDBLite | 217 | 259 | 43 | - | – | |
| MobiDBLite | 220 | 259 | 40 | - | – | |
| Gene3D | 238 | 338 | 101 | 4.0E-20 | ||
| SUPERFAMILY | 249 | 344 | 96 | 7.87E-20 | ||
| ProSiteProfiles | 260 | 335 | 76 | 14.266 | ||
| CDD | 260 | 335 | 76 | 2.87616E-33 | – | |
| SMART | 261 | 331 | 71 | 4.9E-15 | ||
| Pfam | 262 | 327 | 66 | 2.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0411700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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