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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0411800 |
| Transcript ID | LotjaGi3g1v0411800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|K7N2T3|K7N2T3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0411800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81580952..81583960) extracted from Lotus japonicus Gifu genome v1.2.
CAATGTCTTCTAAAGCTATTCACTTTAGCAAGAGGATTGATGAATGCAGCCTTCAAAAAGGGGTGTTGGTAACCATTCTT CTCCCTCTCTCATTTTCATTTGTATATATATTATGAATGAATGTGTATATGTGTAAGGTATGATTTTATGAATAAAAATT GCATGTTTATTTTCTAATTAAAGGACTTTGATTATGGATATGCTTCATTAACAATGGTTTTTTTGGCAGAGGATGCCGAG GAGGTTTGTTAGTAAACATTGGATCAATGCAAGAATTTCAAACCCAGTAGCTCTTTTGCTTCCTGGTGAAAGGTGGAAAG TTACTTGGAAAAAACATGGTTCTGATGTTATCATGTTTGGAGATCATTGGAAGGAATTTACAGAGTTTTATTCTTTGGAT GTGGAACATTCTTTGTGGTTTTCTTTCAGGAACGATTCACGTGTTCGAGGAACACAATTCAAAGTTAGGATACATGAATC TGGCTTGGAAATAAAATACCCTGGTAGAGATCAAGAAAGCACTGACTCCGGTGAAGAGAGTGACACTGACAAGAGTACTG ATGATGATGATGATGATGATGATGAAAATGAAAATGAAAATGAGGTTCACGGTTCCTCAAGACGCCAGAAAAAAAGGGAA AAATCTCCCTTACCATTTTCTGGGTCTTCTAAGAAGAAGAAAAACAACCCAAAAGAGGGCCATCATAAAAGCTATCACAG GCAGCATGCAGGAACTGAATCTCAAAGGGTTATGAGTGAGAATAATACAAATCCTAAGAAAACAGGTTCTCGTCTTTTCT CCTTTTCCGTTTCCTTTCCAAAGTTGGTTGAATGTAATATAAAGTGCTTAAGAAGGAGCAGTTCTTTTGGTAAAATTTTG TCATTTCTTGGGTTGATTTTTGTTTGGTCCATGGATGATGGAAATAGACTTTTTCAATTGGAAACCATGTCAAGTTTCAC TATAATAAATTAATATATAAATAAATGAATGGTTAATGAAACTTGATAACTATTAAGTACGATTTGGTGATTGTTCACTT CATTTTTTAGCCGACATGACAATTAAAAGTTATAACATGTTGCTACTTGGTGTTTTGCATCAGCATCGATGTGATTAATC ACTGTTGCCGCGGTGGATACCTTGGTTGCAAAAAGGATTTGTAAAACTTGACTTTGGTCAACTTGATTTGTTTTGTTAAC AGGTAAAAGAGGAATCAGCCAAGCCAAAGGAGGGTGGTCTGAGGAGGAGCCCCTGAAAGACTCTAGAATTAGTAGTGCAG ATAAAGCTGTAAGTAGCTCTGAGAACGTCATCATTCGTTGTACAATGCACCGATCATACATAGAAAGGAATACGATGGTA AGGAAATTAAACAAATGGTGTGTAACACATATGAAATGTGGTGGAAAATTTAGTTTTAATTCTGATTAATTTACTTTGTT ATTGTGGCAGTATCTTTAATTTGCTTTAGTCCACCATTATTAATTTCAGTTTTCAAACGATCTTCCAAACATGCGCTCGC TATGTTTGGATCAATTTAATTGTGTGAATTGTACAAGTTGCATAATGAACCCCATAATAAGTCAGACAATCCTTATGTTA TAACAAAACATTGACTATTGAGAAAATTGTTGTCTAAACAGTCAATGCCAGGCCGTTTTGTACCAGCACATCTACATAAG GAGGAAGGGAATGCTATTCTTTGGGTTGCTGAGAAGAGTTGGGATGTCAGGTTCAAGCTGAACCAAAGCAGTAATCAATT TTCACTTACTACTGGTTGGAAGAAATTTCAAGAGGAAAATACTTTGAAAAAAGGTGATAAATGTGTTTTGACGCAAATGA ATTCAGAGAAACTTTCATATAGTGTAGAGATTGAACGTGCCAAAAGAGCATCAAGCCCTCACTTGGTTCAAGGTATATAA TAACTTGATTGCTTTTTATTTATCTTGAGATTTTATTAATTATTAGCTTCATTTTCTCTTTATACTCTGCTTGACATGTT TTTGGATGAAGCAGAGGCAGAAAAAAGAAAACAAACAAGGCTTCAAAGTAACTTAGCTGAAGGCAGTGGAAGAGGAATTG CAGCTAATGTCTTGGATAATGGTTTACTTACTAGCTACCAACACATATATACCTCATTCTCTTCATTTCTTATTCGCTCA TATTTGAGTTGTTTTAATTTTCAACTCATCCTCTTTCTTTCTTTTTCTTGTAGATTCTGAATTTCCTAAAATGAACAGCA AAAGGGAGAATCAATTCACCATCATTTTAAAGAACACTCATATGAATGAAATGGTAGTGCAAATAACTTATTGTGTGTTC TTTTGTTGTCTTTAATATGATCAAAGTATTTTATTTTTATGAGCCTACAATACAACTTTTTTTCCATCCAATTTTGCATT GTCTATTCTAAATCCACTCACATGAGATATAGGGTTCTCATTTTAATTTTGTGAATAAACTTGTCATGTGGGATCAAATA TTTATGCCATTGCCATGACTAATTAGATTCACTTGTATTTGATGAGCAGAAAATACCACTGGGATTCATAAAAAAATATG TCACTGATAAGGTAACCAGTGTGGTGCTTCGAGCTAAGGGGAGAAAATGGGATGCCCAGCTATCCTATGATCCAAAGGAT GATTCCACAGCATTCTCTTCTGGTTGGTCTGAATTTGTGAGGGAGTGTCACTTGAAGGAAGGAGATCAATGTGTCTTTGA TCTGGTTGATAAAGAAAATTTTGTGCTTGAAGTTAAAGCTTCAAGATGCATGTTCTGAGGTGTGACTTGCTTATCACTGT GACTTTAGTGTTTTCCTAGTTTATTTTCATGCGCGGTTTAGAATGGTTAGCTTTATGCCTTTATAGAATTCTGGTGATCT TCCTGGTAGTACTTACTGTATGAACATGTATAACTTTTTTTTTTACTTGGATTCTGTAGTGTTTATTTGCTATTTCTAAT ATGAAAAGGGAATATAAAAAATATTTGGGTTAAATAAGTTTTTCGTCCC
CDS sequence (LotjaGi3g1v0411800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTAAAGCTATTCACTTTAGCAAGAGGATTGATGAATGCAGCCTTCAAAAAGGGGTGTTGAGGATGCCGAGGAG GTTTGTTAGTAAACATTGGATCAATGCAAGAATTTCAAACCCAGTAGCTCTTTTGCTTCCTGGTGAAAGGTGGAAAGTTA CTTGGAAAAAACATGGTTCTGATGTTATCATGTTTGGAGATCATTGGAAGGAATTTACAGAGTTTTATTCTTTGGATGTG GAACATTCTTTGTGGTTTTCTTTCAGGAACGATTCACGTGTTCGAGGAACACAATTCAAAGTTAGGATACATGAATCTGG CTTGGAAATAAAATACCCTGGTAGAGATCAAGAAAGCACTGACTCCGGTGAAGAGAGTGACACTGACAAGAGTACTGATG ATGATGATGATGATGATGATGAAAATGAAAATGAAAATGAGGTTCACGGTTCCTCAAGACGCCAGAAAAAAAGGGAAAAA TCTCCCTTACCATTTTCTGGGTCTTCTAAGAAGAAGAAAAACAACCCAAAAGAGGGCCATCATAAAAGCTATCACAGGCA GCATGCAGGAACTGAATCTCAAAGGGTTATGAGTGAGAATAATACAAATCCTAAGAAAACAGGTAAAAGAGGAATCAGCC AAGCCAAAGGAGGGTGGTCTGAGGAGGAGCCCCTGAAAGACTCTAGAATTAGTAGTGCAGATAAAGCTGTAAGTAGCTCT GAGAACGTCATCATTCGTTGTACAATGCACCGATCATACATAGAAAGGAATACGATGTCAATGCCAGGCCGTTTTGTACC AGCACATCTACATAAGGAGGAAGGGAATGCTATTCTTTGGGTTGCTGAGAAGAGTTGGGATGTCAGGTTCAAGCTGAACC AAAGCAGTAATCAATTTTCACTTACTACTGGTTGGAAGAAATTTCAAGAGGAAAATACTTTGAAAAAAGGTGATAAATGT GTTTTGACGCAAATGAATTCAGAGAAACTTTCATATAGTGTAGAGATTGAACGTGCCAAAAGAGCATCAAGCCCTCACTT GGTTCAAGAGGCAGAAAAAAGAAAACAAACAAGGCTTCAAAGTAACTTAGCTGAAGGCAGTGGAAGAGGAATTGCAGCTA ATGTCTTGGATAATGATTCTGAATTTCCTAAAATGAACAGCAAAAGGGAGAATCAATTCACCATCATTTTAAAGAACACT CATATGAATGAAATGAAAATACCACTGGGATTCATAAAAAAATATGTCACTGATAAGGTAACCAGTGTGGTGCTTCGAGC TAAGGGGAGAAAATGGGATGCCCAGCTATCCTATGATCCAAAGGATGATTCCACAGCATTCTCTTCTGGTTGGTCTGAAT TTGTGAGGGAGTGTCACTTGAAGGAAGGAGATCAATGTGTCTTTGATCTGGTTGATAAAGAAAATTTTGTGCTTGAAGTT AAAGCTTCAAGATGCATGTTCTGA
Protein sequence (LotjaGi3g1v0411800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKAIHFSKRIDECSLQKGVLRMPRRFVSKHWINARISNPVALLLPGERWKVTWKKHGSDVIMFGDHWKEFTEFYSLDV EHSLWFSFRNDSRVRGTQFKVRIHESGLEIKYPGRDQESTDSGEESDTDKSTDDDDDDDDENENENEVHGSSRRQKKREK SPLPFSGSSKKKKNNPKEGHHKSYHRQHAGTESQRVMSENNTNPKKTGKRGISQAKGGWSEEEPLKDSRISSADKAVSSS ENVIIRCTMHRSYIERNTMSMPGRFVPAHLHKEEGNAILWVAEKSWDVRFKLNQSSNQFSLTTGWKKFQEENTLKKGDKC VLTQMNSEKLSYSVEIERAKRASSPHLVQEAEKRKQTRLQSNLAEGSGRGIAANVLDNDSEFPKMNSKRENQFTIILKNT HMNEMKIPLGFIKKYVTDKVTSVVLRAKGRKWDAQLSYDPKDDSTAFSSGWSEFVRECHLKEGDQCVFDLVDKENFVLEV KASRCMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 106 | 106 | 1.4E-10 | ||
| PANTHER | 2 | 342 | 341 | 6.1E-51 | – | |
| SUPERFAMILY | 2 | 103 | 102 | 6.08E-10 | ||
| PANTHER | 2 | 342 | 341 | 6.1E-51 | – | |
| ProSiteProfiles | 7 | 107 | 101 | 8.473 | ||
| SMART | 8 | 107 | 100 | 0.0039 | ||
| MobiDBLite | 110 | 239 | 130 | - | – | |
| MobiDBLite | 110 | 126 | 17 | - | – | |
| MobiDBLite | 127 | 145 | 19 | - | – | |
| MobiDBLite | 146 | 166 | 21 | - | – | |
| MobiDBLite | 190 | 209 | 20 | - | – | |
| Gene3D | 226 | 341 | 116 | 9.1E-20 | ||
| SUPERFAMILY | 240 | 333 | 94 | 3.34E-16 | ||
| ProSiteProfiles | 244 | 340 | 97 | 11.815 | ||
| SMART | 244 | 340 | 97 | 3.9E-4 | ||
| CDD | 248 | 338 | 91 | 9.3889E-12 | ||
| Pfam | 249 | 338 | 90 | 9.8E-14 | ||
| PANTHER | 367 | 482 | 116 | 6.1E-51 | – | |
| PANTHER | 367 | 482 | 116 | 6.1E-51 | – | |
| Gene3D | 374 | 485 | 112 | 1.9E-23 | ||
| ProSiteProfiles | 390 | 484 | 95 | 12.858 | ||
| SUPERFAMILY | 391 | 480 | 90 | 2.55E-18 | ||
| SMART | 393 | 486 | 94 | 1.9E-12 | ||
| CDD | 393 | 484 | 92 | 3.61769E-15 | ||
| Pfam | 398 | 483 | 86 | 2.5E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0411800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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