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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0415900 |
| Transcript ID | LotjaGi3g1v0415900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein ELF4-LIKE 4; TAIR: AT1G17455.1 ELF4-like 4; Swiss-Prot: sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4; TrEMBL-Plants: tr|I3SVD8|I3SVD8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0415900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82172769..82175361) extracted from Lotus japonicus Gifu genome v1.2.
AATTGAACATGTGTATGGTGTTGGGCTGTTGGCGTTCAGTGTAGGCAATCTGTATGTGCTGTGCTGTGCTGTGCTGTGCT GTATGTGACTTCCCCTAACACAACAACACAACTCACCCTTCATCTTTGGGTGAAGTAAACGAGGTTTCTCTCTTCCATCA TTTTCAGGGACTCCCTACTTCTACTTTGCCCCCTAAATTCCCACCCTCTTTCCTTCTTTGACGTCACCTTCCACAGCTGG GAGATGCTCCACTTTCTCAAGGTAAGATGAAATTCACGGGTTCTTAGACAATTCATTCCCCTTTTTGATGCTGATTGTTT TCTGGGTTTGTCTGTTTCCTTGTTCAATTCTGCAGAATTACACCAAAGATTTTATCTTTTTCTTTTTTAAATAAAAGGGT TTGTCTTATTTTATTGGATTGGAAGACTTTTATCTGTATTGACTTGGCTTTTTGGATTCCCACTACTGGGGAAGGTGTTT TTCACTGTGTCATGATCTGTATCAAATTGTTTTCATTGGTACCAGTAAAAGGAAAAGGTTCTTTCTTATTGTTCTTGTTG AAAAGGGTCTGTCTTGCTTTAAGTCAGTGAGAGAGATCATGTTTTGGAATCTTATGCAAACCCTCTTTGTTTGGTTGCTT AGGTGATAGAGTTAAGAATTTGGTAAAAGTTGTGTTTCCCTAGAATTCCTGTTTCAACTGAGTCAGCTTTTTGGATTCTC TTTTCTCTTCTGCAATCAGATAGATTAGGCATCTTACCAAGTTGCTTCTGTATAGTTACTTTCTTCTTTAAATTTTGCAA GAATTCACACACTTATGTCTTCTTTTCTTCTTCATATTGTTCAGGGTTTTGACCTTTTATTCATTTGTTGCAGGATTATT TGTTAATTGAATCCTGAGTGTAATTGAAATGGATGGTGATATATTTGGAGAACTAGGTAATACAAGTCAAGTAGATAGCA GAGTTATGCAGGTATTTCAGAAGAGCTTATTGCAAGCCCAAGATATTTTGAATCAGAACCGGGTGCTGATCAATGAGATA AACCAAAATCATGAGTCCAAGATGCCTGATAATCTGAGTCGAAATGTGGGTTTGATTAAGGAGCTCAATAGCAACATCAG AAGGGTGGTTGATCTCTATGCTGATATCTCTAGTTCTTTTACCAAGTCCCAGGAAGCTTCATCTGAAGGGGACTCCAGTG GGACTCTGAAGTCTGATGGAAAAGTCAATCAGAAGAGAATTAGATCCGGCTAATAAACTGAATCCAATGTTCACACGAAT CACTGCAATCAAGAAGTGTATTATGATCTTGGAAAGAATTTGTTTGGTGAGACTGTATAACTCCTCCAAAATTTTATTTG TGCTCAGTCTTCCATATTGGTTTTATGCCTACAGGGAATAGAGCTCTAGTTAATCTTCTAATCTGTTCAAATAGCATCAA TTTGACTTTGAGGACTACAGAATTGTGATTTCCTGTAACTCTTTAGCATCATGAAATGAATTATGTTCATGGACCAATTT ATCAAGCTTAACTTCATAGATCTTACTGATGTTTATTGGCAAGTTCTAGATAATTCAGTTGTTCTGCCTGTTTGATCATT TGGTGAGATATTGTTAATTACTTTCCTTTTGGATCTCTATCAAACATTAGGTGCCTGAGATCCATTAACTGACGCTTAGT GCTTAATAAATATCATTTATTGATGATTGTGGTCTTAAACCAACACTTACTGCTAGGATTAAAATCCAGAGAGCTTACAT GCTGGTCTTTTACCACTCTCAGATTAATGTGTATGTTTTTTCTGTTTCATGTTTAGGAGCATGCTCAATAATATTAATGC CTTTTGAGATCTTGTCCATCATCATATTTGTTTCAGTTGTTTGGGTGCAAAGAAAGAAAGCGACCATAGTGACTTACTCC ATCCTAGACACCAAACTCTCGACTAGGACTAGTCCTTGTTTCTAATCAGATGAAATGAAGAGAAATGCTACCAACACACT TTTTTTAACGTATGTGATTTACTTTTTTGAAAAGTCAACACACTTTTTAATTAGGATGACAAATGTTTTTGACGATTTAA AAAATAGACCAACTATAAGGATTGAAAAATGTGTTGCTGAAACTTCTCATCCCACCCATGAAGTATGATTGGGATTCTTT GACATAAACACTTTTTGTTGGCTTTTTGATGGATAATGTAATTGCATGATAATTACAGCTAGAATACTAATATAATTGAA GGTGGCATTCTGCCTAACCATGAAAAGTGGCAATAATTGACTCTGGGGGTAGGGGATATGATATTCTTGGTGAAGTCTAT GTTTGGAGACTCATTGGATGCTGAGTGCCTAGGATCCATCCACCTATACATGATGTAAAGTAAAGAGCTTTAGAAAGTTT AAAAAAGAAAAAGAGTAAGGAAAGTGCTTTGGTGGGGAAATATATGTTTGGTTTAAACAAGTATTTAATTTCTACTTATA AAACAAGAATTTCTCTATAGTTTTTTTATACGCGTCAGTCCTAATATTTCTTTTCAAGTTTAGGTATTAGTTTGTTTTAA ATTATTATTAGTAGTAGTGGTGCGTGGTGACTG
CDS sequence (LotjaGi3g1v0415900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTGATATATTTGGAGAACTAGGTAATACAAGTCAAGTAGATAGCAGAGTTATGCAGGTATTTCAGAAGAGCTT ATTGCAAGCCCAAGATATTTTGAATCAGAACCGGGTGCTGATCAATGAGATAAACCAAAATCATGAGTCCAAGATGCCTG ATAATCTGAGTCGAAATGTGGGTTTGATTAAGGAGCTCAATAGCAACATCAGAAGGGTGGTTGATCTCTATGCTGATATC TCTAGTTCTTTTACCAAGTCCCAGGAAGCTTCATCTGAAGGGGACTCCAGTGGGACTCTGAAGTCTGATGGAAAAGTCAA TCAGAAGAGAATTAGATCCGGCTAA
Protein sequence (LotjaGi3g1v0415900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGDIFGELGNTSQVDSRVMQVFQKSLLQAQDILNQNRVLINEINQNHESKMPDNLSRNVGLIKELNSNIRRVVDLYADI SSSFTKSQEASSEGDSSGTLKSDGKVNQKRIRSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 114 | 114 | 2.5E-55 | – | |
| PANTHER | 1 | 114 | 114 | 2.5E-55 | ||
| Pfam | 14 | 95 | 82 | 5.6E-36 | ||
| MobiDBLite | 84 | 114 | 31 | - | – | |
| MobiDBLite | 84 | 104 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Positive regulation of circadian rhythm | Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. |
Expression pattern of LotjaGi3g1v0415900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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