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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0416200 |
| Transcript ID | LotjaGi3g1v0416200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 2-oxoglutarate-dependent dioxygenase; TAIR: AT1G52820.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q945B6|AOP1L_ARATH Probable 2-oxoglutarate-dependent dioxygenase AOP1.2; TrEMBL-Plants: tr|I3T4I6|I3T4I6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0416200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82195362..82199099) extracted from Lotus japonicus Gifu genome v1.2.
GCTCATACTTATGTTATAGTATTCAAGAATGTGTTTGGTTATGTCATTCGCTTGATTATGTGTCTTTAGTTATCGTTATG CGATATAGTAATATGGTTGCAGATTTTTGGGTTACTCATTCGTCGGTTTAGTGTGAATTGAGGAGGTGCCTCCTGATGCC GTTTCTTTTGTATTCTCTGTCTTTGAGACCTCTGTGCTATTTTCCACTTAATTATGAAGTAGACGGATTAAAAAAAAAAA AACCACAATGCTACTTCTCGTTGCTGCTCTTTCTCTCATCACTCTCTGTTCACGAAAATGGCGACTCCGATCTTCTCCCG TGTCCTCCCCAAAACCCTAACCCTCGCTCCATTATTCTCTCGTTCCCTCTCCACCACAACCACCCCTTCCTCCACCTCTC TCCGCTCCCTCTCCACCACCTCATCCCTCAAAGAAACCACCATCGCGCCCGATGCCTGCGACCTCAAGCACTGGCTCGTC GTCATGAAGAAACCCGATAGCTACTACCTCAAGGACTACTCCAGGGACGATATCATCGATGGCTATGTCAAAACCTTGGC ACAGGTCGTCGGAAGGTAACCGCCACCATAGTCCCTCTTTGTAATCTAAATGTTCGTTCATTTTTATCTATATCCCCAAA TTGATTAACTGCATGTTTCTTTTTATGTATGATTGATTATCCAATTGGAATATCTTTGTGTTTGTTTATAAACATCGCAA TTCTAAATGTCTAATTAAAGAAAACTCAACTTATTAGTAATTTTAATAATATATATAAGGGCTGGTAATTACATACATAA GACTTCGGGTTTGGGTGCGGGTTTAATCAATCCCACACCCGAACTCAAATAGGTTTTATAATTCGGGTGAAACCCAAACC CAACCCACACCCAAAGAAGTTGGGTTTCGCCCGAAATTCGGGTTGGGTTTGAGTCAGGCCCCGTAAGTGTGGATTTTTCT GCCATCTCTAATGAGGGGTAGAGTAAACTCATCAAATAAAAGTTTCAAAAAAAAAAAAACTCATCAAATAACAGTATAAT GTAAAAGATTAACTGCGTGAACCATACTAATTACTTTTCTAATTTGGTACTCAACCAAATCTTATCACTAATTTTAAAAC TTTGAATTAACATTTAAGTTTATTCAAGTCAGTCAACAAACTATTTCTAATAAATTATTTTACGGGCTGATACTTTTTAA TTCATTTTATTACTAATTTAATGTATAATTATTGGTGCTGACCTAATAGATCGAATACATTTTTTATTATTTTATCATTT TGGTCGATATCATGTGAGCGTGCTAATAATTAACTCAATTATTACCATATTGGTTCAAACCTAGCTAGCTTAAATAAGCA TTCATATCTTCAATCTTGTGATCAAATTAGAAAAGGAAAAGTGAAGACATGGACTCAGAAAAGCTTCCGGCTATTGACTT CACTAACCTCAATGACTTGGCTAATTGGGAGGCAGTGAAATCCAAAGTTCACAAGGCACTAGTAGACTATGGTTGCTTTG AAGCAATTTTTGATACACTAGTTGTTCCTTTAGATCTTCGCAAGGAAGTTTTCACTCAACTAGAAGATCTCTTTGATCTC CCTCTACAAACCAAGCAACTCAACGTGTCTAACAAGACCTATCATGGTTATATTGGTCAGTATCCTATGATCCCACTATA TGAGAGCATGGGCATTGACGACGCAGATGTCTCTGAGAACGTTGAAACCATGACCAAAATCTTGTGGCCTAATGGAAACC CAAGTTTTAGGTACGTGTCACATATATCTTGTCTATTACTTTTCTCTCTTCTCTTTATATATATTTAGGTGTATACACAA AAAAAGAAGTGGTACGTACATTATTGCTGATATATATTTGCTATTCTCATTTCTTGATTTTCTTTGAATTTGCCAGCAAA ACTATAAATTCATTCTCTGAGAAACTCTCAGAGATGGACCGGATTATGAGGAAGATGGTTTTGGAGAGCTTGGGTGTTGA AAAGTACTTGGAGGAGCACCTTGACTCAACCAATTGCCTCCTCCGGTTTATGAAATACAAAGGCCCTCAAACCACTGACA CAAAGGTAGGCCTAGACATACACACAGACAAAAGCATTGTGACCATTTTGTACCAAAATCATGTGGAGGGTTTGGAGGTG CTCACCAAAGATGGAAAATGGATAAGCTACAAGCCTTCCTCACAAAGTTTCGTCGTCATGATCGGTGATTCTCTCCATGT AAGTTATATTCACCTTAAATATCTCATTGAAATACCGACATTACATGACATGTCATTTACAATTTGTTCCTTATGTGCTA AAATTTATTTGTAAAGAAGTCATTTTAACTTGTGAACCATGTTTTTCTTGGTCCACGGTAGACAGCCTTAAATAATTATC ATCGCTATGATTGAATTATGTTGAAAATTTGTAATTTATAAAATTAATTGTGATGTGAAATTTGAAGGCATGGTCGAACG GGAGGTTGCATTCACCCTTACACCGAGTGATGATGACCGGGAGCGAAGCTAGATACGCTACAGGATTCTTCTCTATTCCC AAAGGAGGGTACATGGTAAAAGCCCCGAAGGAGCTGGTAGATGAGGAACACCCTTTGCTCTTTAAGCCTTTTGATCATGT TGAGTTCCTCAAGTACTACTATACTGAAAAAGGCCTGGAGGGAGACAAGTTTGCTCTGCGCAGTTACTGTGGTGTTTAAA CTGTCAATGATCGTGTTTCATAATCATACATCTTCTATTTTCAAATGTTAATAATCCATAGATAAATTACCATGGACTTA ATAAAACTCTGCCTTATATATGTACTTGCAATCATTGAGTGCGCGCGTACGGCGTACCTCATATAGAAGTGTTGTATGTT CAAATGTTCCTAGCACTACAAGAAAGTTATGCATCATCGTCAACCTGACAACGCTAAGTCGGTTGTGCAGCAGATCCAGG TTAGATAGTTACACTCAGCTTGGAACATATCCAGGTTGAATGTTTGATTCTTCTGGTTAAACAACAATGCTCTTAAAAAA TGTAGATACTTTCATAGATAGCAGCAATGATAATAATTCCCTCGAGGCTATAAGATCACATTAAGTGAGTAGGTCTCTTT CAACAAATCATTTTCATACACACTATCCAAATATTAAACCTTCGACTAAATGCTTAAAGAGAACAACTATCTACCGGCTC TGTTGGGACATGTCGGTGAAATTATCTAACCATGTAAAAGTATGTAAAAGGAAAGAATGAAAGTTTCACTCTAATATTCA ATGGATGCCACCAATGTTACTCGCTTATTCCTTTTCTGGCTTTATCGAAGAGGATTTGGGAATCATTGAGGGGGGACAAA TGTTTTCGTACTTGAAAGTTGGAACAATACAACTAGTTTTATCCTTATCCATCACTAAGTGCCAATTCTATTCATTCACT CAAACTGTCAATCAGCACATAACGCTTGTTTTATTCACTCCAAAGCATATCCCCATAAATCATGTCTTTTACCTGTTCCA GCTTTGTTGAGACCGAACTGGTTCTTGTTGTGCTTATAGAAATTGTCAACCATGCTCTTTAAGTGTCTCTGCATATTCTT TTTTTCCCTTTACATTGACACTTTTGGCATAAGAAAAAATGTTTCCGTTCCCTGCGATTCTGATACTTGGAGCATTTCTA ATTGCCTTGACATTTTTCACCCTCACTATGCTTGGATGGTGCTGTAATACCAATCCCT
CDS sequence (LotjaGi3g1v0416200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCAGAAAAGCTTCCGGCTATTGACTTCACTAACCTCAATGACTTGGCTAATTGGGAGGCAGTGAAATCCAAAGT TCACAAGGCACTAGTAGACTATGGTTGCTTTGAAGCAATTTTTGATACACTAGTTGTTCCTTTAGATCTTCGCAAGGAAG TTTTCACTCAACTAGAAGATCTCTTTGATCTCCCTCTACAAACCAAGCAACTCAACGTGTCTAACAAGACCTATCATGGT TATATTGGTCAGTATCCTATGATCCCACTATATGAGAGCATGGGCATTGACGACGCAGATGTCTCTGAGAACGTTGAAAC CATGACCAAAATCTTGTGGCCTAATGGAAACCCAAGTTTTAGCAAAACTATAAATTCATTCTCTGAGAAACTCTCAGAGA TGGACCGGATTATGAGGAAGATGGTTTTGGAGAGCTTGGGTGTTGAAAAGTACTTGGAGGAGCACCTTGACTCAACCAAT TGCCTCCTCCGGTTTATGAAATACAAAGGCCCTCAAACCACTGACACAAAGGTAGGCCTAGACATACACACAGACAAAAG CATTGTGACCATTTTGTACCAAAATCATGTGGAGGGTTTGGAGGTGCTCACCAAAGATGGAAAATGGATAAGCTACAAGC CTTCCTCACAAAGTTTCGTCGTCATGATCGGTGATTCTCTCCATGCATGGTCGAACGGGAGGTTGCATTCACCCTTACAC CGAGTGATGATGACCGGGAGCGAAGCTAGATACGCTACAGGATTCTTCTCTATTCCCAAAGGAGGGTACATGGTAAAAGC CCCGAAGGAGCTGGTAGATGAGGAACACCCTTTGCTCTTTAAGCCTTTTGATCATGTTGAGTTCCTCAAGTACTACTATA CTGAAAAAGGCCTGGAGGGAGACAAGTTTGCTCTGCGCAGTTACTGTGGTGTTTAA
Protein sequence (LotjaGi3g1v0416200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSEKLPAIDFTNLNDLANWEAVKSKVHKALVDYGCFEAIFDTLVVPLDLRKEVFTQLEDLFDLPLQTKQLNVSNKTYHG YIGQYPMIPLYESMGIDDADVSENVETMTKILWPNGNPSFSKTINSFSEKLSEMDRIMRKMVLESLGVEKYLEEHLDSTN CLLRFMKYKGPQTTDTKVGLDIHTDKSIVTILYQNHVEGLEVLTKDGKWISYKPSSQSFVVMIGDSLHAWSNGRLHSPLH RVMMTGSEARYATGFFSIPKGGYMVKAPKELVDEEHPLLFKPFDHVEFLKYYYTEKGLEGDKFALRSYCGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 299 | 299 | 1.2E-59 | ||
| SUPERFAMILY | 2 | 296 | 295 | 2.06E-68 | – | |
| PANTHER | 5 | 295 | 291 | 4.8E-82 | – | |
| PANTHER | 5 | 295 | 291 | 4.8E-82 | – | |
| Pfam | 6 | 83 | 78 | 2.9E-10 | ||
| ProSiteProfiles | 158 | 259 | 102 | 10.603 | ||
| Pfam | 161 | 256 | 96 | 3.1E-20 | ||
| PRINTS | 183 | 204 | 22 | 1.5E-5 | – | |
| PRINTS | 219 | 245 | 27 | 1.5E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0416200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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