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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0416300 |
| Transcript ID | LotjaGi3g1v0416300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 2 1; TAIR: AT2G06530.1 SNF7 family protein; Swiss-Prot: sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1; TrEMBL-Plants: tr|I3SB43|I3SB43_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0416300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82200004..82203764) extracted from Lotus japonicus Gifu genome v1.2.
GACCCACTGGTCCGACCAGTGACTCAGTACCCGACCGAGTCGATGACCGAGCCGAGTTTTAAAACACTAGTATAGATTGA GAACTGAGTAGTAGTACTATATGATATAGTTGATGCAAACTAAGTGCAGAGAGAGTATAACATAGGACACAGAATCCAGA AAACAGGGTCTCTTGCAGAGTTTGAAGAACGCTGAGTGAGGCAAGATGAGTTTTCTGTTCGGCAGTAGAAAAACTCCAGC AGGTACTTTTCTCTTTTTCGGTGTTTCCCAGATTTTGTTTCACGGGTTCGTTGTTGTTGTTGTGAGTTTTGATTGTGTTG ATTGATTGAATGGAGGGGTGAAAATTAATGGGTTGGTATTGGTTTGTCTTCCCAGTTTCAAAAAATTGTCTCTTTGATTA GGAACTAGGTTGTTTTGTTGATGGGTATTTTTTGTTTTTTTTTTTGTGTGATTGTGATAGAGCTTTTGAGGGAGAATAAA AGGATGCTAGATAAGTCCATTAGAGAAATTAAAAGAGAAAGACAAGGCTTGCAGAATCAAGAAAAGAAGTTGATTGTAGA GATCAAGAAGAATGCTAAACAAGGACAGATGGTATCATTCCTCTTATTTATTTATTTATTTATATATTTCTATTTTCATT ATTATATTTGGTATTCTTAAGCAGTGATTAGTAAATAGAAATTTGTTGCTTATATAAGGATTGTGGTTTGGTGTAGTGGG GTGATGTTAAGAATTGAGATGATTTGAAATTATATGGATTTTTTGTTCTGGTTTAAGCTTTTGGTGGGTTTGGCTTAAAT TTGTCAGGGGGCGGTGAGAGTGATGGCCAAGGATCTTATCCGAACTCGCCATCAGATTGAAAAGTTTTACAAGCTTAAAT CCCAACTCCAGGGTGTTTCTTTGAGAATTCAGGTTTGTTTAGCCGAACTTTGTTCTGTTTATTAGTCACAGAACTTGAAA ATTTTGATCACATTAGCAAATAATTTAAAGATTTTGTCTTCGGTGTTGCATTACTGTGATGCATATATGTATCTTTTACA ACTGACTTCAGATGAAAATACTAATAAATGAAAGTTTCCTGGTTATGTTGCACCAATTTGTTCATAGTGTATCAAATCTA AGATGCAGGCTAGTTTAAACAGCTCAAGTATCATTTTTCCATGTCATGTATTACCTCTTATTTTTAGTGTATTTTTTTGT ATCTTCTCCATTTTAATTTAAAGATCTATCATGTTTATTCAATTTTGGGCTTCAGTTACCCAAATAAATGAGTTATGCTG GTTTTATTTTCCACTAGTTACTTAAATAAATTAGCACCTATGAAGAGAAATCATACTAAAATCCTTCGTGGATGATAAGG GGCTAGAGGGTGGGAACCAAATTTCACAACTTGTCTCAAAGCGATTAAATATTCGAGATATTTAGTTATTTTTCATCTGA AAACTCGTATTCCTCGTGGAATTTTGATAAACTCGTCAAGATATTTGACTGTAAAAGGATGAAGATTCATCTGGTGTGAG TATGACCAATATTTTACCATCTAAGATACCAAAAGATAAAGTTATAATAATACCGTGGTTGAAATTGAATATGGGAGGAG TAGAAAGGAATCTTCAAGTGCAAAAATAGATGCTAGCTTTGTTTGAAGTAGCATGCTCGGGATGGTATTTCAGCCATTGT TTAGAGTCATGTATTGGAAATAAAACATATAACAAGCCTTGAATTTCTTTTAATTAGCTTATGGAGTTATGTAGTTAATA TCTACTTACTTCAATTTGTGATATGAATTTCTTAATTATTTTATTATGTTGTCTTTTATAAATGATGCAGTAACTCTGTC TATGATCAGAACCCTTTAACTGTCTCGAAATCATATAATGGATTGATAAATAGTTAATAATTTTATGTCAAAACTAGTTT CAAGGTAACAGATTATCCATTTTGTGTTAGCAAGAGATTATATCTAATGTAATCCTTTTGCTGAACTTATGTTGCTCTGA CTATTTTTATGTTGGAGGCTTCCACACTTTTACAATAAAGAGGGTCTTTTGATTTATAAGCATTTGAAAAAACAAAAAGG GCCGTAGAAAGAGATATGTTTTGAATCACACAGTGATACGCATACTGCAGCAGTCTTGTTCTATATGTTTCAGTTAAATG TAATTCAGTCTACCATAGAAGGCTAGGCTTTGTTTTGAATTAGGGATTATCCAAAGGGATTTGAAATCTATAAGGTTTTC ATCTATGTTCCTTGGTTAATTGGCAGTCTACCTGATATCGTTGCCCTTTCTTTTCTTTCCCATTTTCTCCAGTAGATATG ACATTATAGATGATTCATTTGCAACTTTGGATATATCACTGCTCATTTAGTCTACCCTAATCCGGTTACCATTTTCCTTG ACATTTTCACTATAACTTCTCTGACCAAGCAGCTCTCTGGGCTACACACTATACCTATAATAAGCTAAGGTCATGACTCT CCAGGTCACACAATCTTCGTCTCCAACTCATTGGATCACGTTTTCACTTTTCAACCTTAAATATGACCATATATCACAAC CTAAATCAGTCTTTGATTCATCCACTTCTAAAATTCTCTCACCATTACCAAACTATTCCAATTACCAGCAACCAAATCAA ATACTAAAAACACATTATCGCTTCAATCTCCAACAATGACAGCCCTTAAAAATTATTATCTTAAAAGTTTGTTAGATTGA TTGCATTGATTATAGCATTTAAAAATGACTCTTGTGTCAATTTCAGACTCTAAAATCTACCCAAGCGATGGGAGAGGCTA TGAAAGGAGTAACTAAGGCAATGGGTCAAATGAATAGGAGGATGAATTTGCCTTCCTTACAGAAGATAATGCAAGAGTTT GAACGGCAGAATGAGAAGATGGAACTGGTGTCTGAGGTGATGGGAGATGCAATTGATGATGCTCTGGAAGGTGATGAAGA GGAGGAAGAGACAGACGAGCTTGTCAATCAGGTTCTTGATGAGATTGGAATTGATATCAACTCTGAGGTAAGTTGTTGTC ATTATTATTATTATAACAAAAGAGCTAATTATTGATGAAAAGAATTCTTGCTCCTCTAACTGGATGGAAGGTGTAAAAAT AATAACGGTACACATATTTATTTTGTTCAATGTGCAGCTTTTGCATACCCCTGCATCAACCTCGGTTGCTGCACCAGCCG CAAAGAGCAAGGTTGCTCAAGCTGAACCAACAGGCAATGACGACAGTGGAATAGATGATGATCTACAAGCTAGGTTAGAT AACCTGAGAAAAATGTAATTGTACAAAGGTTTCGAGGAGATGGTTTCAAAGAAGCATGAAATGGAATTAGGCACTGTTAT TGTCTCATTTTATTATCAGGTTTGAAGCTATCTTGCATGTGTAAATAGTAATGCTAAAATTACAAATTGACTTTCATCAA TACAAGCACGGAAGAGTTGTTGTGATATATATCAACTTTGAAATTCTGGACCTCATCTTTGTAATTGATCTGTCCCCTCT ATAACTTGTTACAACTTTGATTTGGATGTCATGTTACAATATGATTCGTATGAAATCGTGTAGACTGACCTAAGTGATCA GTCCGTAAAAAATTATAAGTCGGTTAGTTCGGTATCATCTATAAAAATAGGCATTTTCGTCCATGAAAGATAGAAATTGA TCCATTTAGTTCATGAAGGATGAAAACTATGATCAATTTAGTCATTGAAAGATGAAAAAAGTGATCAATTCAGTTTTTGG A
CDS sequence (LotjaGi3g1v0416300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTTCTGTTCGGCAGTAGAAAAACTCCAGCAGAGCTTTTGAGGGAGAATAAAAGGATGCTAGATAAGTCCATTAG AGAAATTAAAAGAGAAAGACAAGGCTTGCAGAATCAAGAAAAGAAGTTGATTGTAGAGATCAAGAAGAATGCTAAACAAG GACAGATGGGGGCGGTGAGAGTGATGGCCAAGGATCTTATCCGAACTCGCCATCAGATTGAAAAGTTTTACAAGCTTAAA TCCCAACTCCAGGGTGTTTCTTTGAGAATTCAGACTCTAAAATCTACCCAAGCGATGGGAGAGGCTATGAAAGGAGTAAC TAAGGCAATGGGTCAAATGAATAGGAGGATGAATTTGCCTTCCTTACAGAAGATAATGCAAGAGTTTGAACGGCAGAATG AGAAGATGGAACTGGTGTCTGAGGTGATGGGAGATGCAATTGATGATGCTCTGGAAGGTGATGAAGAGGAGGAAGAGACA GACGAGCTTGTCAATCAGGTTCTTGATGAGATTGGAATTGATATCAACTCTGAGCTTTTGCATACCCCTGCATCAACCTC GGTTGCTGCACCAGCCGCAAAGAGCAAGGTTGCTCAAGCTGAACCAACAGGCAATGACGACAGTGGAATAGATGATGATC TACAAGCTAGGTTAGATAACCTGAGAAAAATGTAA
Protein sequence (LotjaGi3g1v0416300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFLFGSRKTPAELLRENKRMLDKSIREIKRERQGLQNQEKKLIVEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLK SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRRMNLPSLQKIMQEFERQNEKMELVSEVMGDAIDDALEGDEEEEET DELVNQVLDEIGIDINSELLHTPASTSVAAPAAKSKVAQAEPTGNDDSGIDDDLQARLDNLRKM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 223 | 221 | 1.4E-133 | – | |
| PANTHER | 3 | 223 | 221 | 1.4E-133 | – | |
| Coils | 12 | 46 | 35 | - | – | |
| Pfam | 17 | 191 | 175 | 5.0E-44 | ||
| Coils | 119 | 139 | 21 | - | – | |
| MobiDBLite | 184 | 224 | 41 | - | – | |
| MobiDBLite | 210 | 224 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi3g1v0416300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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