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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0423900 |
Transcript ID | LotjaGi3g1v0423900.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine protein phosphatase 7 long form isogeny; TAIR: AT2G04865.1 Aminotransferase-like, plant mobile domain family protein; Swiss-Prot: sp|F4IFD0|MAIL2_ARATH Protein MAIN-LIKE 2; TrEMBL-Plants: tr|A0A151SHP6|A0A151SHP6_CAJCA Serine/threonine protein phosphatase 7 long form isogeny; Found in the gene: LotjaGi3g1v0423900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83312832..83316403) extracted from Lotus japonicus Gifu genome v1.2.
ACAGCTGCGTTCACTTTGTTTCGGTGTTCACTCCGAATCTCGCTGACCCATCTCATCCACTAGGACGGTATTGTGTGGAC TTGAATTCCAGGTTCCTTAAGGTTCTTCTCTTTTTCTCATGTGAATGTATTTGATAACACTCTATTGTTTCCACAGTTAA GTGATTTTCATTTTTCCTGTAATATGTAAGAACTTGATTAATGCCTGCTATGTATGTATGTATGTATCTATTAAAATCCT GAAAAATAAACTGTTATGGGTTAGTTGGTATTATTTGACATTCGAAGTTTCAAAGGAAAGACCAACTTTGTCTAGCAATT GAAAATAGTTGCAGCATCTGTAATGCCATACCTGGTTCTAATTACTTGTTATTGTTCTAAAGTCAGTTCGTGTCATAATC AAGGCATAAGTTACCTAATCAAGTTTGGCAAGGATTTTATCTCAAGTTGGAAATATTGTTAAATTATCAGGACTGCTGAT GATTAAGCTATTAGTTGTAGGGCTTATGAAAGCTTCATTGAGGACATTTTGGAGTTGCGGAGATAAGCATTGGAGTGAAA AGCTTTTCTGTTCTGTGTAGGAAGTAAGAGAGAGTTTGTGAAATGCATTCTTGGCAAGATGTGAATTAGAAATGTTTTGA AGGTGAAGATTAGGCACATCATACCTTGAGTGGCTTTGTTTATCTCTTCTCGGTCCACCTTACAATGTGACACTGACAGG AATGTCACACATAGGCATCAGGCTGGGTGGATAAATTGGAGAAATGGTTTTAATTTATTATTACAAACTGCTTATCAAAC AAAGGAAAATTCTATCAGTGTTCTATGATTGTGAACGTTGCAAATAGCCGTGGAAAATGGATCCCGAGGGCTGTATAATT ATTCAATAGGTAAAAGGAAAGCAATAGTGCCACAAAATAATTTGATTTCATTTTTCTTCCGTTGTTCTGTTGTTAGACCA TGAAATTAAAAGAGAAATAAAACAAACCCCTATAGAAACTGTTTTAATTTGAATGCAGTTAAAATGCCATGGTGCATATT TCTAGTAGATGTATCTTTGCTTCGCGAAGCATAATTTTTTCATTGATTAAACTTTTCATGATATCAGTCCAAGGTTCATA CCGTAAAATATGAAGTTTCTCTTTTTCACCAAGGTGGTGCAAAGTAGTGGGATAAGTTGGAAGAAAGGTTCTTTGGATAA TAGTTTTGAAGATGCAACTTTAATCATGCTTTGGCTCTAGCTTGAACATGGCTCAACAGTATGTACAAGTTAATGTGATG CCATTTCCAATTGGCAAAACAGACATCAACCTGGCGCTTAATCTGAACGTCAGCTTGGGAATATTTAGTTTGTAATGTTG ATATGCTCCTGTTCTGTCTCATTTATCTTGGCTGAATGAAGAATAGCAGTGAGTTTCATAAGATGCTATTGCATCACAAA TTGGTGCTGATTCGTAATTATCTTTGTATGATTCTGTATTTTGGACAGTTCTCATTACTTTCCTAAATGGAGCTCAATGA AGATCCTGGGCCAATTGATAATTGTGTACTATATGATCAAGATAATCACGTTTCTTCAGCAATTTGGGATGGACATGTAG GTTAATTTTCTTATATATTTATAATTTCTTTAATTCACATAAACTTTTCTTGATATTCATCTTATTGGATTTTGTCATAT TTATTCAAACCAAATACACAGGAGCGTGGGGTGCTTAGATGCCATGAACACACTTCATTGCTTGATCAGTGGAAGCTCAC ACCTATACAGATTAAGTTAGTTGAGAAGGCTGGTTTTGGTTACCTTCGACTACTTCCTGCTATGAGCCTTGACAATGCAC TCATAGCAGCTTTGGTTGAGCGGTGGAGGAGAGAAACAAATACCTTTGACTTAAGTGTTGGAGAATTAACAATAACCCTT GAAGATGTAGCACTATTACTGGGATTGGCTATTGATGGAGAACCTGTGATAGGTCCAATAAGTGCACCAGGTTCAGTTTG TGAAAAACTACTAGGGAGAGTACCAGAGGACTTGAATGGAGGAATGGCGAATCTTACTTGGCTTAAGGAATTCTTTTCTG AGTGTCCTGAAGATGCATCGCCGGAACAAACCGAGTGCTGTACTCGTGCTTACCTTCTATACCTGGTAGGCAGTACAATA TTTTCAACAACAACTGGGAACAAAGTCCCTGTTATGTACCTTTCTTTGTTTGAGAACTTTGACAGGGCAGGAAAGTTTGC TTGGGGTGCAGGCGCATTGGCATTTTTATATAGAGCACTTGGCAATGCATCCCTTAGATCTCAAAGCACCATTAGTGGCT GTTTAACTCTAGTTCAGGTTATCAAATTACTTCCCTCTAGTCTCTACACTCAACTGGTGATAGTTTTAGTTTGAAATCTC ACTGATTAGTTGGTCTTTTTTTAGTGTTGGAGTTACTCTCGCCTCAATGTTGGACGGCCAAAATTTAATCAAGAACCTGA TAACATTTGCTTTCCCTATGTGCTTAAATGGAAAGGGAAAAGTGGTTCTAGGACAAAATGTAATGCAGTGTCCTACAGGA AGGCTTTGGATTCTCTTAAATCTTGTGATGTAAGTGTTAATAATGTTGCTCAATTGACATTTTTTTAGGCAAGAGAAAAT AGTAAATCTGCTTTAGTGTTAATACACAGGTTCACTGGCTTCCTTACAAGGATATGGACTTTACAGCCATACCAGAAGAT ATAAAAAGTTGTCTGAATTTACGGGCATCTAGAACTATGCTATTGTGTTTTGACAAGGCAGAAAGGCATCTTCCAGATCG TTGCTTAAGGCAATTTGGCATGTACCAAAACATCCCGAAAGATGTGGAACGGTGGGAAAGGAAGAATCGTATAGTGGATC ATGGGATAGGCCTGAAGGGGAAAATGGACATGGCTCTAAAAGAATGGTCAGAGCGTTGGCTTCATATTGCAGAAGGTGGT GAAATTTCAGATGAGGGTGAGTACATGCAATGGTACCAGAAGATTACTCGGAAATACATTGTGAGAGTCACATCATCTTT GGAGTCTGAGTATCAGAGAACCGTATGTCTTCGCCTAGTTATCATTATTTATCTTTCTCTTGAACATGTAATAAATACTT GACTTTCACATACTATTACAGGTTACTGCGATGAGGGAAATTGCAAACATTGCTGATATAATCTCAACAGAAGGGTTGGA TTCTCATAACAAAGATTTACTTGATGAAGTGAAGAGCCTTGTGCACAAGTGCTTAACAGAGCAGTTTGAAGAAATACCAG AGGAGAAAGTGAGTAAGAAGTGTAGTCGGAAACGTAGGCAAAATGATCACCTAGGTACGGAGTATGAATAGCATAGGTTA GAGCAGAGGCTGAAGCTAACTCTGATTTTTGCCCACTGATATTTATAGCTTAAGGCTGGTGAAGGACGCAAGGTGTTTAA TCGAACGTTCAACACCACAGCAAACAAATCCTATAGAAGAGGATGGCATATATATTCACAATTTAAAAATTAAACTTGAG ACATTTTGATGCAGATAGTTGGTAAATACCTGCTGTAAAGCCCCATTTGATA
CDS sequence (LotjaGi3g1v0423900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTCAATGAAGATCCTGGGCCAATTGATAATTGTGTACTATATGATCAAGATAATCACGTTTCTTCAGCAATTTG GGATGGACATGAGCGTGGGGTGCTTAGATGCCATGAACACACTTCATTGCTTGATCAGTGGAAGCTCACACCTATACAGA TTAAGTTAGTTGAGAAGGCTGGTTTTGGTTACCTTCGACTACTTCCTGCTATGAGCCTTGACAATGCACTCATAGCAGCT TTGGTTGAGCGGTGGAGGAGAGAAACAAATACCTTTGACTTAAGTGTTGGAGAATTAACAATAACCCTTGAAGATGTAGC ACTATTACTGGGATTGGCTATTGATGGAGAACCTGTGATAGGTCCAATAAGTGCACCAGGTTCAGTTTGTGAAAAACTAC TAGGGAGAGTACCAGAGGACTTGAATGGAGGAATGGCGAATCTTACTTGGCTTAAGGAATTCTTTTCTGAGTGTCCTGAA GATGCATCGCCGGAACAAACCGAGTGCTGTACTCGTGCTTACCTTCTATACCTGGTAGGCAGTACAATATTTTCAACAAC AACTGGGAACAAAGTCCCTGTTATGTACCTTTCTTTGTTTGAGAACTTTGACAGGGCAGGAAAGTTTGCTTGGGGTGCAG GCGCATTGGCATTTTTATATAGAGCACTTGGCAATGCATCCCTTAGATCTCAAAGCACCATTAGTGGCTGTTTAACTCTA GTTCAGTGTTGGAGTTACTCTCGCCTCAATGTTGGACGGCCAAAATTTAATCAAGAACCTGATAACATTTGCTTTCCCTA TGTGCTTAAATGGAAAGGGAAAAGTGGTTCTAGGACAAAATGTAATGCAGTGTCCTACAGGAAGGCTTTGGATTCTCTTA AATCTTGTGATGTTCACTGGCTTCCTTACAAGGATATGGACTTTACAGCCATACCAGAAGATATAAAAAGTTGTCTGAAT TTACGGGCATCTAGAACTATGCTATTGTGTTTTGACAAGGCAGAAAGGCATCTTCCAGATCGTTGCTTAAGGCAATTTGG CATGTACCAAAACATCCCGAAAGATGTGGAACGGTGGGAAAGGAAGAATCGTATAGTGGATCATGGGATAGGCCTGAAGG GGAAAATGGACATGGCTCTAAAAGAATGGTCAGAGCGTTGGCTTCATATTGCAGAAGGTGGTGAAATTTCAGATGAGGGT GAGTACATGCAATGGTACCAGAAGATTACTCGGAAATACATTGTGAGAGTCACATCATCTTTGGAGTCTGAGTATCAGAG AACCGTTACTGCGATGAGGGAAATTGCAAACATTGCTGATATAATCTCAACAGAAGGGTTGGATTCTCATAACAAAGATT TACTTGATGAAGTGAAGAGCCTTGTGCACAAGTGCTTAACAGAGCAGTTTGAAGAAATACCAGAGGAGAAAGTGAGTAAG AAGTGTAGTCGGAAACGTAGGCAAAATGATCACCTAGGTACGGAGTATGAATAG
Protein sequence (LotjaGi3g1v0423900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELNEDPGPIDNCVLYDQDNHVSSAIWDGHERGVLRCHEHTSLLDQWKLTPIQIKLVEKAGFGYLRLLPAMSLDNALIAA LVERWRRETNTFDLSVGELTITLEDVALLLGLAIDGEPVIGPISAPGSVCEKLLGRVPEDLNGGMANLTWLKEFFSECPE DASPEQTECCTRAYLLYLVGSTIFSTTTGNKVPVMYLSLFENFDRAGKFAWGAGALAFLYRALGNASLRSQSTISGCLTL VQCWSYSRLNVGRPKFNQEPDNICFPYVLKWKGKSGSRTKCNAVSYRKALDSLKSCDVHWLPYKDMDFTAIPEDIKSCLN LRASRTMLLCFDKAERHLPDRCLRQFGMYQNIPKDVERWERKNRIVDHGIGLKGKMDMALKEWSERWLHIAEGGEISDEG EYMQWYQKITRKYIVRVTSSLESEYQRTVTAMREIANIADIISTEGLDSHNKDLLDEVKSLVHKCLTEQFEEIPEEKVSK KCSRKRRQNDHLGTEYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 472 | 467 | 1.5E-208 | – | |
PANTHER | 6 | 472 | 467 | 1.5E-208 | – | |
Pfam | 61 | 407 | 347 | 2.5E-94 | ||
MobiDBLite | 477 | 497 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0423900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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