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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0425900 |
| Transcript ID | LotjaGi3g1v0425900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcineurin B, putative; TAIR: AT4G33000.2 calcineurin B-like protein 10; Swiss-Prot: sp|Q3HRN8|CNBL9_ORYSJ Calcineurin B-like protein 9; TrEMBL-Plants: tr|A0A151SHN3|A0A151SHN3_CAJCA Calcineurin B-like protein 10; Found in the gene: LotjaGi3g1v0425900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83556485..83560343) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAGCAAAAGGGGTCTCAAACAAAGAATATTTTTTCTTCATTCTTATTTCACTAACTTTTCTTTTATTATCATGTCAC CTATCATACCTCTTATTTCTTTCTCGTTTGTTCTTTAATATGTTAATAGAGGTGTGATTATTTATAGGGGTTCTCTCCCA ACATGTTTCTTTCACGTCAAATCACCTTGTGGCCTTTCAGCTCAAAACTTATCATTATCCTTTCTAATAATAAAACAAAA AATATTCCTAAATGGGTCATTACTCATTAGATTAGAGGTGATGTCTTTTCCTCTTAACCAAAAAAAGATTAGTTGTCATG TTAAAATAAACCTCAGAAAGTTTAGGTTTGCATGTCTGTCCTATAATGATAATGATATGGACTTGCCTGATGACTCGTTG TCTCTGGTAATTCAATTCTTGTCTTTTTTTCTCGATCTCCATTTTTGTTTCTCTAACAATGACTTTGAATCTGGTTTGAC TCAGACATCGAGCTTAACTATCGGCGAGGCGCTCTGCGCGGTCTGCATACCGTTAATCGGAATCGTCGAAGCTTTGTTTT TCGGGTTAGCTGGTTGCTTCGATTTCCATCGTGGAACCAACAAGGTCAACAACAACAACAACAACAAAATCTCTTGTTCC TTCCACGATTTTCTTACCCTCGCCAAAAACTCTCCATGTTCGTCTCTCAATTTCTTCTTCCTTTTTCAATTTTCGCATCT TTCGTTTCGGAATTGAGTGAATTCATGGCATTGTGGTTTGGTTTGGTTTTGTTTTGTTGCAGTTACGGTTAATGAAATTG AGGCGTTGTATGAGTTGTTCAAGAAATTGAGTAGTTCAGTCATTGATGATGGTCTCATTCATAAGGTAATTTCACTGCTC CAATTTCTGATTCTTTGACTTTTCAATTCAATGAAGTCATTTGGGAATAATTGCTTAGATTACGATCTTGAAATGTTTTT TTGCATTTTGAGTTTGTGCATTTTTTAGGAAACAAAATTTTGTGTTGGTTGGTTGTTGTTGACTCTATTAGTTTAATCAT TTCTTGCATCTTGAGTTTGTGCATTTTTAACTCTACTTTGTTTATGTTATGAAGGAAGAGCTCACACTGGCATTGTTGAA GACCTCAACTGGCAAGAATCTTTTCCTTGATAGGGTATATAAGCATTTTTCAGTTTTTATTTTTTCTTGGTTTAGTTTTA GAAACTTTGTTACATTATGGAAAAATATTTGATTTGTAAGGAAAATTTTTAAGGGACTAAATTGGTCACGCCAGTGGCAC CTCTCATACTTCCTCTTTAAACTAAAACTCCGAAGCTTATTCGTTCTGCCCCCTCAAGATCTTTGATCGAGTTCCACCAC TGCTGCCTGCTATTTGATATCTCCTGTTTAATTGAATTCTATTATTGAACTTAAAATATGGTTTCTGTGTTATGTAAGGT TTAAAACTCTAAAGCTGTATTTGTTTTAGCTTTTAAGTTACACATGATGCTTGTAAGTTTTGTTTCTATGTTCGGAAATA TGAGGCTGGTCCCAGAAGGCAAATTTCTGCTCATAACTTAAAAGTGAATATTCAAGGCTCCAATTATGCATCTTTCCGCT CTGCCTTTTCCTTCTAAATTCCCGGTGGAACATTACCGGCTGTCCTACAACCATGAATGCTTTTACTAGTTACTAGTCCA ATGTTATGTGAACAACGATTGTTGTCACACAAAACTCTGGTCTTGAATTGTTATGATGGATTGAATATTTTCCATAGCTT TGTTTGCCATCTGAGTGAACTCTTTGAAAGATCAAATTTGTATATTATCTTTTTTTTGTACAGATATTGAAAGGTGTATC TTACTAATTGACAAATGCATTTCTGATACTTCAATAAATAGCTGTGCATTGTTAATCCTATATGGCATAAGCAATGGTGT CAGGAGATGGTGTTATGTGCATATCCTCCACATTTCCCTTCCCTTTCGAGAATATAGTGTTGTGTTTCTGCAGATATATA CTTGACTTGAAGAAAGATCTGTTATTTACTGCTATTCTTCCTCTCTGACCTGTATAATTGATTCCCTTTTATTGCTCTCA AACTTTTATAGGTGTTTGATCTATTTGATGAGAAAAGAAATGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGT GTCTTTCATCCTCATACGCCTTTGGAGAAGAAAATTGATTGTAAGACTTCAGTTAGCATTTTGCAGTTGGATTTTTATAT TATCCATTTTAATGCTAGAAGTATTAAATTTTGAATAAAATCTTTTTTTTTCTTGGTTTGTTCACAGTTGCTTTCAGATT GTATGACTTGAGACAAACCGGATACATTGAACGAGAAGAAGTGAGTACCTTGGCATATCCAGTTTATGAAGATGCCATTG AATTAAACATATTTTTGCTATCCTGTTCCTAGTATAATATTGCACTAGAATTCTCTTAGTGCAATATCAACTTGATTTGA CAAGTCCCCGAGGGTTAGCTCAAGTGGTAAGAGCTAGGGGACATAAGGGTGGGGAGGGGAAGGTCCAGGGTTCGAACCCT GGAAGGGAACTTTGAAGGGATTTTCTAACTTACTAACAACTAACCACTAACATTTGCTTATAAAAAAAAAAACTTGATTT GACAAGTTTCATGAAGAAAAGTGGTAACTTGCCCCCCCCCCCTCCCATGGTTTTCTGTTTACCATATCTGGATTGTTTTG CTAACCTGCAACGCATTCCAGGTTAGACAAATGGTGGTTGCCATTTTGTCAGAATGTGGCATGGATCTAGAAGATGAAGT CCTTGAAAGCATTATTGATAAGGTAATTGTTTGCAGGAACATTTCTTGTCCCTCTATGTTGATTTAAGTTTGGATCATTT TAAGTAACCTTTTATTTTTTTAAAAAAAATTCAGACATTTCAAGATGCTGACACCGATGGGGATGATAAGATATGTAAAG AAGAATGGAAGGAATTTGTCCTGCGGCATCCAACACTCTTGAAGCACCTGACTCTTCCTGATCTGAAGTAATTTACTCTC GTGCCTTATCTTTTTCCATCATAGTTGAATTTCTGTCATGTCATTATTATCTATGAATCAGCAAACAGTATATTGAGAAG TAGACAAAGCAAGAAAGGGATGTGGTTTTTCTTATTGCTAATGTAAAATTTCTTCATACTATCCCATTTAAACATTAGTC AAATTTTAACTCATTTTAATAACCATCACAGCAAACTTATGTTTAAATTTGATGATTTGCATTGCATTATTTGGAACTGA GTTCAAGCTTTCCATTTCTTTGTTCACTGGTCAGGGACATCACCACAGTATTTACCAGTTTCATTTTCAACACTGAAGTT GATGATTCCCACTGGCAACTCAACAACAATCATAAACACTAAGGAGGAGGAGGAGGAGCTTCTTCTGTTGCATTAGTGGT TGCTATTCTGAGAGTTATATTCTGGCGGTACCACTCCATCAATGTTCATTCCGAGCAGAGATAATTCATGGAAGTGGACA AACCCACCAACCCTTAAGCAAAGGGGTGTTCTTGAATCTGATCCAAACCGAGCAGTCCAGTTAAATTAGATCAAATATTG CACTAACAGTGTAAAAGTTTTGCATAGTCATTCAATTAGATACCATTAATTTGCCGTGTCACTATTAAATTTGAATTAAA AATATTTAAAGTGGAATATGAAGAGATGTGATTGGAAGCATGTGTAGAACTTTTCCACTGAGGGTCAATGCATATGTTTA TTAATTATTGTACACCTTAAGTGTAAAAATTTTCTTGTAAATATCAGAAAATCATTTGAAAAACTGAAAATAAATATGAT GTGTTTATGGAAATATTAT
CDS sequence (LotjaGi3g1v0425900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTTCCTCTTAACCAAAAAAAGATTAGTTGTCATGTTAAAATAAACCTCAGAAAGTTTAGGTTTGCATGTCTGTC CTATAATGATAATGATATGGACTTGCCTGATGACTCGTTGTCTCTGACATCGAGCTTAACTATCGGCGAGGCGCTCTGCG CGGTCTGCATACCGTTAATCGGAATCGTCGAAGCTTTGTTTTTCGGGTTAGCTGGTTGCTTCGATTTCCATCGTGGAACC AACAAGGTCAACAACAACAACAACAACAAAATCTCTTGTTCCTTCCACGATTTTCTTACCCTCGCCAAAAACTCTCCATT TACGGTTAATGAAATTGAGGCGTTGTATGAGTTGTTCAAGAAATTGAGTAGTTCAGTCATTGATGATGGTCTCATTCATA AGGAAGAGCTCACACTGGCATTGTTGAAGACCTCAACTGGCAAGAATCTTTTCCTTGATAGGGTGTTTGATCTATTTGAT GAGAAAAGAAATGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTCATACGCCTTTGGAGAA GAAAATTGATTTTGCTTTCAGATTGTATGACTTGAGACAAACCGGATACATTGAACGAGAAGAAGTTAGACAAATGGTGG TTGCCATTTTGTCAGAATGTGGCATGGATCTAGAAGATGAAGTCCTTGAAAGCATTATTGATAAGACATTTCAAGATGCT GACACCGATGGGGATGATAAGATATGTAAAGAAGAATGGAAGGAATTTGTCCTGCGGCATCCAACACTCTTGAAGCACCT GACTCTTCCTGATCTGAAGGACATCACCACAGTATTTACCAGTTTCATTTTCAACACTGAAGTTGATGATTCCCACTGGC AACTCAACAACAATCATAAACACTAA
Protein sequence (LotjaGi3g1v0425900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFPLNQKKISCHVKINLRKFRFACLSYNDNDMDLPDDSLSLTSSLTIGEALCAVCIPLIGIVEALFFGLAGCFDFHRGT NKVNNNNNNKISCSFHDFLTLAKNSPFTVNEIEALYELFKKLSSSVIDDGLIHKEELTLALLKTSTGKNLFLDRVFDLFD EKRNGVIEFEEFVHALSVFHPHTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMDLEDEVLESIIDKTFQDA DTDGDDKICKEEWKEFVLRHPTLLKHLTLPDLKDITTVFTSFIFNTEVDDSHWQLNNNHKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 295 | 263 | 1.7E-145 | – | |
| PANTHER | 33 | 295 | 263 | 1.7E-145 | – | |
| Gene3D | 76 | 291 | 216 | 3.9E-63 | – | |
| SUPERFAMILY | 101 | 282 | 182 | 4.77E-44 | ||
| PRINTS | 107 | 126 | 20 | 1.8E-10 | – | |
| ProSiteProfiles | 147 | 182 | 36 | 12.421 | ||
| SMART | 151 | 179 | 29 | 0.05 | ||
| CDD | 152 | 213 | 62 | 6.63623E-7 | ||
| Pfam | 153 | 172 | 20 | 0.04 | ||
| PRINTS | 155 | 176 | 22 | 1.8E-10 | – | |
| ProSiteProfiles | 184 | 219 | 36 | 11.919 | ||
| Pfam | 187 | 256 | 70 | 1.5E-8 | ||
| CDD | 188 | 257 | 70 | 4.12532E-10 | ||
| SMART | 188 | 216 | 29 | 1.2 | ||
| PRINTS | 202 | 220 | 19 | 1.8E-10 | – | |
| ProSiteProfiles | 228 | 263 | 36 | 11.166 | ||
| SMART | 232 | 260 | 29 | 0.031 | ||
| ProSitePatterns | 241 | 253 | 13 | - | ||
| PRINTS | 248 | 268 | 21 | 1.8E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi3g1v0425900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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