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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0426200 |
| Transcript ID | LotjaGi3g1v0426200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9YGP5|RBPS2_XENLA RNA-binding protein with multiple splicing 2; TrEMBL-Plants: tr|I3S8G5|I3S8G5_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi3g1v0426200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83574554..83583193) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGACATACATTACTCATAACACTAGTTGTGAATGAATTAATTTTTAGTGAAATTTTTTTTTGAGTGTTTGTATTGAG TGTGAGGAGATTCTTGAATTTTGGGAGCGGAAGCTAGGATCTTGAGCTTAGCATTTTTGAAAGCGATTAATTTTCTAAGG TAAGGATAATTCACCTAGTTAACTAGCTATATGCTAAACGCTGACTTGCCGACGATGTTAATTGAATGTTGATTGATTGC TGATATAATATGTTTTTTGAACATGATAATTGTGAATCGTTAATATGGACCGTGATGTGAGAGCCTCATGGGCAGTTGAC TACGCCTCCCGGAGAGCTACCTATACTGGTGGAGCGGTCCAGGACGTGTTTGATGAGCATAGACTCGTTGTTGAGGGGCG GGTCGTACTTCGCTTAGTTTCGACTTACGTCTGATAGGACCTAGTCTGAGACGACCACCTCCACCGATGTCATCAAGTTC TTCTAAGAGTGACCCATCTGACGAGACGTCTACTTTTCCTAAGGCGCACCCAGCAGTGGTGTACATGACTGCACATGACC ACACTTCTATCCCTTTTATTTCCCGAGGACCCGTGCTGAAGTAGAAGAGATAGAGGTGGGGTCATGTGCAGTCAATTGCA AATGCTTCACCCTAAACACTTGAAAGGGAGAGAGGACTCAGCAAGTAATGCTAGGCAAGTTTCTACTATCTGTCTATGTT TACTTTCTGCTGTGCCATTTTGCTGATAATTGTATAGACAAAAAAATCTATTTAGTATACCAACTCATAAATCTGCGAAA CAGCTTCAACATTACAAACAAGGAAGAAAGCAACACCAACCTCCTTCCAAATTTGACAAGATAACTTACAACCAATGTCT TCACTCATTTGGAAACTACATAACAACATCAATACAATAACATATCCTTGACCCTTTTTCACAATCATAAAACTGGACAA TTGCACAGCACAATTAAGGAAATGTAAATCCAAAAGCAAAAAAACTAACATCCTTCTTATCTTGCACCCTCACAAATCAA TAATACACTTCTCATAAAATAGAAGTAAAAAAAGACACAAACAAGCTCACAAATTAACAGCATAGTAGGACCCAAATGCT CCTAGAATTATTGGATTTCCATTAACCAATTCATGATAATGGTGAAGCACAAGATTTTAAATTGTAGCCTGCAATCATAA ACATTACACACATAAATTTCCCAAGTTCAAAACTCTGATCTCAGTATCTCACCATTCTTGTTGTGAGTGAAAATTGAAAG ATGACAACAACCTACGGCACAATCCCCAGCTCACCACCTCCGAAGCTGGAGTACATCACACGCGCCAAGCAGAGGGTCAA AGCGGGCCTCGGAACTCGCCGCCCATGGAAGACAATGCTCGACCTCCGATCACTGGCAATCCCCGACGGCGGAATATCCG AAGCTATTTCCCGTGTTCGGGTCAACATGGCGTATTTCCGCATGAACTACGCCATGGTTATGCTCCTGATCCTGTTCCTG AGCCTTCTATGGCACCCCATTTCGCTCATCGTGTTCCTTCTCCTGATGGCAGCGTGGCTGTTCCTCTACTTCCTCCGTGA CCAGCCGCTTGTTCTTCTCGGTCGCCTCGTTGACGACCGGCTTGTTCTCATCTTCATGGCGGTGCTCACGGTGGCTCTGC TGCTTCTGACGGATGCGACGCTTAATATTCTTGTGGCGGTTGTTGTCGGGGTGGTGGTTGTGGTGGTGCATGCGGCGTTT AGAATGACGGGGGATTTGTTGTTTGAAGAAGAAGAAGCTGCTGTTGCTGGGTTGGTTCCTAATTCTGGCGCTGCTCGTTC TTGATTCTGTTAATGGATTGTTATTTGCTGAATTTCGTAGAATTGCTTATGCTTTGTTTCCTTTTTCTATGGTTTTTTTT TGTTGTCTAAATAACCCATGATAAAATTTGGGTTAAATAACCCATCATCCAATCACATTGGAGATAAGTGAGTTGGAATT TTTATATATTATTTATTAATTTATTTCCAACTCATTTATCTCCAATGTGATTGGATGATGGGTTATTTAACCCAAACTTT ATCATGGGTCATTTAGACAACCCATTTTTTTTTTTGTTAGTTGAAAACTTCCTCTTCCCAATTCTCAATTTGTGTTGTTC ACAAAAAAAAATTGGTGTTGTTCACTAATTAAAAAAATAAGGGTGGAAAATGGATGAATTAAATGGATATAAGTTGTATT AAAAAAACAGATACAAATTGTAATGGACGAGTCAATAACACTTCATTAATTTTCTGATGTATAAAAAAAAAAATAACAAT TCATTAATTTTTTAAGATCTATTAAAATTGTTTCAAAGAATTCAATCCATTTACGATCCATCTAATAAAAATTTATTCAA TCCATTTATTAGTAAAATGGACCGTCTTTATTAAAAAAAGTTATAATTTTTCTTTGACTTATGAAAAAATCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCGACATAAACC ATAAAACTAATTTGGCGTCGATCCGCTCAATTTGATGCGAACTCGCCTAACGCCAACACCAACCTAAACCCTAAATCTGA CTGACACTAACCTAAACCTTGTGTCTGACCAGATACCCTACCCGACGCTGATCTAAACTTGACATGATGCTGACCTAAAC CCTGAACCTGACCCAATGTCGACCTAAACCCTTAATTTGAACCGATGCAAACCAAAACCCTAAGTCTGGCCTGAAGGACA ACATAAACCCTAAACCGACCATCAAATTTAAAATCAATAGTTCAAATCTAGAATGGAGATGAATCAAGAGATATATAGAT GAAAAATATCGAGTGAATGATCTGGATGAAGAAGATCCAAATTGTGATATTGGGTTGGGTGTGAAGTTGTTGCTATGAGT CTCCAACTATTGTTGTCATGCATTACACGGTTCAAATCTAAAATCATTGATCAAATTTGATCAATTCTATGAATTAATCC TTGTAGGTCATTGGTGTACATTTTGTACGATTTTAGTTATTTACCGCTTAATACAGATATCATTGGTCAAAGGATTAAAA TATCGTTGTGTTGTACCATTAAACAATACTAATCACTTTTTGATACTCAATTATGTGGCGATTTTTAGCTACAATAAAGT TGAGTGTTAAAAAGTTGTCTATCTTGTTTAGTGGTTTACTAATAAGTTAGAGGATATAAGAATTTGTGGGATAAAGAGTG AAAGTTCAACCAACCGTCCATGATTCCAAACTTAGGATGGACTAATTTACTGAAATAATAAGCACTCCTCATATCGTTTT TGTTTAGGAACGACATAATTTAATAGGAGATGAGCGAAATGAGCGAAGCAAGTAAACGACAGTGAGTCTGAGACAGTGCA AAATCGTTTCGAATCGTTTTGTACAAAATCAAAACCTAACCGGATCCTGGCGCTCACATCCTCCGTCTTCATTTCCACAC ATTCAACTCAATTCCTTCTCCGGCGACCACCATCTCCGCCGCATACAACCGCGCCCACCAATTCGCCCTCACCGGCGCAA CCTTCCGAATGGATCAGCAGCCATTCGACCCGTATTTCCTGTACCAACAAGACGAGCGAAGCAACATCAACACACTCTTC GTCTCCGGTCTCCCAGACGACGTGAAAGCCCGTGAAATCCACAACCTCTTCCGCCGCCGCCCTGGCTTCGACTCTTGCCA GCTCAAGTACACCGGCCGCGCCAACCAGGTACTCCTTTCGTTTTCTACTCCTATGTACTGATGCAGTTTCAATGGACACT GAAAACTCGTGAATTTTGTAATGTTGAATGAGAATTCGCTATTCTTTTCAGGTCGTTGCTTTCGCTACGTTTTTCAACCA CCAATCAGCAATGGCAGCGTTGCACGCCCTAAATGTGAGTGCCTAAGCTTTAATAGCACAGTCCATGATGATGAACACTG AGAGTTAGGAATTTAGTTATAGGTAGTCTAATTTCATGATAATACAGTTACTTGTGTTAGTTATGGTTCATTGGTATGAG AATTTGGTGTCATCTTCCCCTTTGTTGACTAAAATGATATTGCTGAAGCCATGAAGTGCATTATAATATGTCAATTGCAG TGAATTTACGCACGTAATCGAAAGGAAATCGTAGGAGTTAGTGGTTTTTTTGTGCTTCTAATGTGTTTTTCCTATGTAAT GGTTTGGTGGAACTGGGTTCTATGTCTACCATTAAATTTAGTTATGTTTAAGGAAAATACTAATTGGTACGAAAATGAAA CTCAAGAATGAAATTCAAGCTGATTACGATAGGTCATCAGCTCCTGAAAAGTCGGCTAGTGCTTCTGATTAATTTGAAAT AGTGATACATTAACTTCATCTTGCATCTTTTCGAATCTATCTTACGTAGTATATAGCAACACTCTGTTTAATTTTGTCAC TTTGTTTACTAACAAATAAAATGGACAGTGGATATGAGAACTGCATGTTGCAGTTAATTATCAATTTATCATAGTTTACT GATAAGGTGTTTACAATGGAAGGGAATTTTCTTTCTGTATAATGTAATTTTTTCCTTGATGATAACCAGGGTGTGAAATT TGACCCTCAAACTGGATCTGTTTTACATATTGAACTTGCAAGGTCAAACTCCAGGAGGAAACGTAAGCCAGGTATATGTT TTATTGGTGCTTTGTAGAGATGATTATGGCTAAAAAAAGAGGAAAGGAAAACATCAAATTGTCAACTATTTGCATATATA AAATATAGATATCTTCTCATTTTCAGATTTATTCCATTTTTTTGTCTTCAAGCAGCTTTTTCTTCAGTTCCCCCAAATCC CAATTTAAGAATTTTTTTTATTTATTTAATCGTTTTGATGAGTTCTGGAGAAATTCAGTGTGCTTTACTTTGATGATTTT AACTCTTTTCCAGTATGATTACTGGTCTTTTATTTTGCGCAGGTGGTGGAGCCTACGTGGTTATAGATAAAAGGTCAAAA GGGGAGACTAATGTTCAGGAATCATCGAGTGATGATGGTGATGTATCTCTCATTATAAGTTCATGACAATATAGGATGTT AGGTTTCATATTCTTGCCCCTCTTCTGTGGCTTACCTGCACATCTTTCACATTCAGGTGAAAGTGACCCTGATGAACCAT CGGAAAGTGGAGACAACCATGGTGATTTAGCAACCACGCAAAGGTTAGCAGTACAATAGAATTTAATAACTTTTCCACAG TTCAAAAGGTCAAAGTTTTGCTAATTGTTAATACAAACAAAAAATTAATAATAAAATTACCCTAGTATTTTGAATATTCT AATGCTTCACTAAGTCTATTATATTCGCTACTTATGTGCAGTGGAGAGACTGCTGTTGGTTCTGACAGTGCTGTACCTCT GGGAAGTGTAAGTGAAAACCAGCAATATGCTCGAACTCTTAGCTTACTGCATTTGTAGAAAACATCCAATATTTTCTTCC TCATTAAATGATTACCATAGAATTCAATCCTTTCTGTGGTTCAGCCAAACCATAGATATAAAACATAAAAAAATGTTTAG TTTGGAGAAAGCGTGGTTTCCTTTTCCCATTAGTAACTTATGTAATCTAATCCCTTCATTTTGGCTGCAGGAGCAACATG AAAAGGGTGGTGGTGATGGAGGGCCATGTTCTACTCTCTTTATTGCAAATCTGGGTCCTAACTGCACTGAGGATGAATTG AAGCAAGCTTTATCTGTGTGAGTTTCTGCTTCTATCTTATTTATGAATCTGCGAAGGGTCTATGGTATTGCTGTTCAGAT TGGAACAATGTTGAAACTGTGTGTTCTTGTTATATCTAGGTCCTCCAATGCTTGTATCTACTTTATATTGATTATAGAAC TTACCGTCTTCAAACCAATTTTCCAGATATACTGGATTCAACATGGTCAAAATGCGTTCTAGAGGAGGAATGCCTGTTGC ATTTGCTGATTTTGAGGTGAGTCAGTTCTTGCAGGATAATGTTAGACATCATTGGTGGAAGAAAGGAGAGAAATGTGTTG ACTTTGAAAAATAAACCAATCACATTGAGTGTGTTAGAGAGTGTGTTGCTACTTGCTAGTATCTCTTGGTGGAAGAGTAG GCATTTACAATAGTCATACATTATGTGTGGATGTCAAAGGCAGAGAAAGAAGGACAGGGAGGATATTATAGATTTAATCT TTATCAATTTGAGGGTTATTGCAATTTTTTATCTCACTCTTCTGTTATTCTTTTCTTTGAAGTAATGTGCTTAGCTCTTT GAATAGAATCTCTACTTTTAAGAATAGCATAATATGATTGTTGATCATTATCTTTGAGCCAATATCATCAGTTTTATAGC ATGTTTCTGGAAAATCTAATTTTCACATCAGTGTCAGTTTGAGGTAATCTCGAAACTATAGCTGCACAACCTCAGCTGAC CATAACATAAATGTCTACGGGACTAAATCTGATCAAGGGGAGTATCATTCAGTGCACAAAAATATTGATTGGGCAACATT GCGTATGCTGTTGTTGTTGCTTGATGCCTGAATACTTTACTATTAAAATATGAGAACGTCATGGCATCTTCTTCATAGCT TTGCGAGTTTGCGTTTATTAAAAAGAAACAAGATATTGTAAACCTCCTTTGTTGACTGCAAATGCCTCCCATACACCCAT GCCCTCTCCAGCCTGCGTGCTTTGCCACCAAAGTAAAATAAAGCATACCATATCTATCCAACAACCCTTGCCCTGAAATT TGTACATTTATTATGATCTTATCAGCCTTTCTTCTTTTGTCAGGAAATTGATCAAGCTACTAAGGTCTTGGAGGAGCTTC AGGGCAGCTCTTTGCCATCATCAGATCGGGGTGGCATGCACATAGAGTATCTTCTTACCTAATCGGTTCTATCAATTTTT ATTCCACTATGATTGGTTAGTTCATCTTTCTAACCTTGTTCTCTCCTTATCTGTGCTCTCTAGGTATGCAAGGTCTAAAA TGAGGAAGCGTTAGAAGAAATTGGAGCTTGACAATTCCCGGATAATGTGCTTGTTCGTTAAAGGCAACATTGTTTCCTCT GGAATAGTTACGACATATAGGAAAAGGTTGAGGTGTCCCATTTTACAAATGGAGGGTGAAAGTTCTTACAATTTTGTTGA AAAGTAAAGATTTTTACTAGGTAATGGAATCCTAAGATGGCATCTTATAGATCTACAAAGCCAGATGGTGTTCATATTAA AAATCTAACCCAAACTGCTCGTTGTTTATTAGAAGCTTTATTTATTTATATAGTTTTTGAAGCAGGGGAGCACGATTAAA TGTTGGTACTAAAAATAGGTAGCTGATTAGTAACATGGCTGCAATAAGAGCTTGATGTCATTAAGTTGATAAAAAAGATT AATGAATTGGTATGCTACATAAACGAAATTTTGCAAGTTCATGGTTTGATAGTGAGACCGTATTTTATTAGCGTATCCAA AGGGTCACAACCCCAATTTTTTTTTATTGCTATATTTGACACATAAATGTTTTTTTTCATTCTTAATCTGGCCTCTTCAA AATATTACTATTAAAAGTAATGTCGTTCACAAACTTGTTTTATATATATATTGAATGAAAACATGTGATCAGAAAACAGC AATGTCACCTTGCTGCCTCTGTTGCGTGTGTTTGTTGCGGAGATCTTGTGGGGGATGTGGAACACATTTTGCGATGTTGC CCAACATTACATCAAGTTTGGAGTAATTTCCGCTCCATGTTGCCCTCTTCTCTGCATGGCCTAACATTTTGTTCTTGGCT GTTTGTGCACCTGCAGTATATTCTTTCTTTAGTGATATTATGGTGCTGGTGGGCATGGCGAAATAGCTATGTTTTTCAGC AGCATCCTTGGCCTTTTGGGGTGGTTTTCCTTGCGCAACATTTGCAGAGCTGTTCCTGAATTTCAGAGGTGGGGGAGAAT GACTATGGTTGTTGCGCCTTCTAATAACAACGTGGGTATTAGTATGGTAGCTTTATGTACTAATGGTAACTTGACTCCGC GATCAAATACTGTGGGGGGAGGGGGCATGCTCACAGATGGGGAGGAAAGATGGATATCCGGTTTTCATCTATGTTTGGAG CGTGAGATGCATTTCTGGCAGAGTTGTGCACAATGTTTGTAGGTCTTGAGGATGTGAGAGATCTTGGGTATCGTAAGGTG ATGTATGTTCCGGTAATGAACACTCAAAGAAGCTCAAACTCTAACAAAGCTTAGAAATGGTAATAGCCTAATTCAATTGA TAAATGAGCCAAAAGTCTCTAACATTGAGTATCAAGTCCCCTTTTATAGAGATTACATGGCCCCTAGTTTTAACTCTAAT GGGCTTGTTGGACCGCACTACAATCCTCGCCCCTGGAGATTGCCAAAGAGGGAAGACCTACTAATTTCCTAAGTCAGTCA GCTTTCCCTTGGCGAGCGAAACTCTTAAGTCCCACTGCCCTTGGGCGAGTCCCTCTAAGTTACGGGAGGCTCGCCCGGTC CAAATAAACGCCAGGGACTAAATATATGTAATCATCAAACATGAACATTAAATATATTTTTTCTTGGTGCAGACATTAAA
CDS sequence (LotjaGi3g1v0426200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAGCAGCCATTCGACCCGTATTTCCTGTACCAACAAGACGAGCGAAGCAACATCAACACACTCTTCGTCTCCGG TCTCCCAGACGACGTGAAAGCCCGTGAAATCCACAACCTCTTCCGCCGCCGCCCTGGCTTCGACTCTTGCCAGCTCAAGT ACACCGGCCGCGCCAACCAGGTCGTTGCTTTCGCTACGTTTTTCAACCACCAATCAGCAATGGCAGCGTTGCACGCCCTA AATGGTGTGAAATTTGACCCTCAAACTGGATCTGTTTTACATATTGAACTTGCAAGGTCAAACTCCAGGAGGAAACGTAA GCCAGGTGGTGGAGCCTACGTGGTTATAGATAAAAGGTCAAAAGGGGAGACTAATGTTCAGGAATCATCGAGTGATGATG GTGAAAGTGACCCTGATGAACCATCGGAAAGTGGAGACAACCATGGTGATTTAGCAACCACGCAAAGTGGAGAGACTGCT GTTGGTTCTGACAGTGCTGTACCTCTGGGAAGTGAGCAACATGAAAAGGGTGGTGGTGATGGAGGGCCATGTTCTACTCT CTTTATTGCAAATCTGGGTCCTAACTGCACTGAGGATGAATTGAAGCAAGCTTTATCTGTATATACTGGATTCAACATGG TCAAAATGCGTTCTAGAGGAGGAATGCCTGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTACTAAGGTCTTGGAG GAGCTTCAGGGCAGCTCTTTGCCATCATCAGATCGGGGTGGCATGCACATAGAGTATGCAAGGTCTAAAATGAGGAAGCG TTAG
Protein sequence (LotjaGi3g1v0426200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQQPFDPYFLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHAL NGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGETNVQESSSDDGESDPDEPSESGDNHGDLATTQSGETA VGSDSAVPLGSEQHEKGGGDGGPCSTLFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLE ELQGSSLPSSDRGGMHIEYARSKMRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 15 | 104 | 90 | 2.1E-21 | ||
| PANTHER | 16 | 222 | 207 | 8.5E-79 | – | |
| PANTHER | 16 | 222 | 207 | 8.5E-79 | – | |
| ProSiteProfiles | 21 | 100 | 80 | 11.656 | ||
| SUPERFAMILY | 21 | 246 | 226 | 8.83E-24 | ||
| CDD | 21 | 96 | 76 | 2.52189E-32 | – | |
| SMART | 22 | 93 | 72 | 2.9E-6 | ||
| Pfam | 23 | 86 | 64 | 2.1E-8 | ||
| MobiDBLite | 101 | 181 | 81 | - | – | |
| MobiDBLite | 147 | 162 | 16 | - | – | |
| Gene3D | 180 | 267 | 88 | 1.2E-18 | ||
| CDD | 183 | 261 | 79 | 4.69083E-40 | – | |
| ProSiteProfiles | 185 | 262 | 78 | 11.554 | ||
| SMART | 186 | 258 | 73 | 1.7E-7 | ||
| Pfam | 187 | 249 | 63 | 1.1E-9 | ||
| MobiDBLite | 244 | 267 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0426200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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