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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0426900 |
| Transcript ID | LotjaGi3g1v0426900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fbd-associated f-box protein; TAIR: AT1G32375.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LQM1|FBD39_ARATH Probable FBD-associated F-box protein At1g32375; TrEMBL-Plants: tr|A0A151SH40|A0A151SH40_CAJCA F-box/FBD/LRR-repeat protein family; Found in the gene: LotjaGi3g1v0426900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83812250..83814975) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAGTTTTTAAAACAAGTTTCAGAAGAAGAAGAAGAAGAAGAAAGGCATGTTTTACAACATTTATATTTATATGAAAA CTAAAAACAGATACAACTGAAAACATCTGTTTTTATTTTTTAGTTTGAAAAATTGTGCATCAAAACCCAATGATAACAGA GATCGATTCGTAGAAAATGGGAGAAAGGATCGCTAGGGGGATTCACCACGATCGTTGATGAAGCTCAAACCCTTTCTCTC AGGTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATACCATACATTTCTTCCGCAATTTCTGATTTTCTCTTATCT GAAGATTTCTATCGACACCCACTGTGATGTGATATGCTGTTGAGTAAAGTAGGCTTAAACAAACTTACTTATTAAAGGGG TGCCAAATTGATTCAAAAGTTTAGATTTTGTAAGATATATATAGGTAAATTGATTTCAGTTGCTGGTTCTCTATGTCACA TGTTTCTGTTGTTGTTTTGGTTTATTTCAGGTGCTGTTTTAATCAACAAATGGACCATGATCATATATCCAATCTGCCCA GAATCATCCTTCATGACATTCTGTCAAGGCTGTCGGAGAAAGATGCTGCTAGGACAAGTGTTCTGTCCAAGGCGTGGGCA GAAACATGGTCTACGTTTCCCATCTTGTCCTTCTGTGACACCAAGATTGTAGGAACGTTTCCCCAGCCAATGAAAGATTT TTTCAGGAAGAGAAGACTCTTCATTGATTATGTGAAGAGAACATTGCTGAGGTTCCGTGACCAAGTCTTAGCGGTCAAAG AGTTTAAGCTCGGTGTGAACAGTTTTGACCTTCATTACATGTCTAAGGATGTTGATCTTTGGTTGAAGTTGGCTGGCGAG AGTGGTGTTGAGGTACTGCAGGTTTGCCTGCCTGATAGAGCTGATCAGGATGGGGAAGGTCAGGAGCTTTGCTATGTGTT GCCGATAGGTGTTCTTGAATCGAAGTCGCTTAAGAAGATCGAGTTGATGGGGGGAATCCGCGTTGATCCAGCATTCATGA ACTGTTCAATCAAGTTTTTCTCGTTGCGAGAACTATCATTATGGTCTGTCCTTCTGGGAGATGAACAGGCAATAGAGTAT CTCATTTCTCGCTGTCCTTTGCTTGAATATGTAACTTTGAAGTGCTGTTCTGTGTTGAACCCTGGTGGAGCAGGAGGCCT GCTTGAGTCTAGGACCTGTCAAATAAAATCTATTAGGATGCGTGGTCTGCCGAAGCTAAAGGGAGTTGACGTTCAAGGAA TACAGGAGGTTTATGTTGATGCCCCGAGTCTTGAGAATTTATGTTTTTGTCCTGGTGATTTCAACGCACCTTGTAAGTTG GAGTTTGAAAGGTGCACAAATTTGAAAGGGTTACACTTATGGTCTTTTAAGAGTACTATTATCACAGAGAAGTGGTTTAT TGAACTGTTTTTTAAATTTCCCTTACTTGAGAGTTTGAAATTGGACAATTGCACAATGTCTGAGAGAATTTGTATTTCAA GTGATAAACTCAAGGTCTTGATGTTGTCTGGTTGCTCTAACTTGAAGGAGGTTATCATTGATGCTCCTAATCTATCATCA GGTCAATTTTGTGGTGATGGTATTGGTGCAGAAAAACCAATTATATCTTTTCTGAGAAGTTCTAGTCAACTGGAAGTCAA AGTTATGATGTTCCTTGATCACCTGGATCTTTGTAACTTGAGGGGATTTCTCCAAAATTTCAAACCTCTAAATGCTTTGG CATCCCTTTCCCTATTTATCCATCAGCCGTTTGTGGTAAGTATAAAGTAGCTATTGGTTGGTTCATTCCATTTGCTTATT TACTTACTTTCTTATATATACACACCATTGATTGTGTAGGATGAATTCAACCCAGTTGTCTTGCAAGATTCATCCTCTCT GCCGATCATCAAACTCTTGGACCTACGCTCTGTTCCAAAAAATGAAACTTTCTTTTGGCCTGTTGTTAATAGCTTACTTT CAAGTTGCTGCCCAGAAACTATTACGTTGAGCTTGCATTCTTTTTTCTGCAGCAGAGCATTCATTGAGGTATGTCATTGT CTCCCATATTCTCGTTTATTTAAAACTGTGCTTCCAGCATTGAGATTCCTACACATTGTGATTGTCCTATCTCATAGAGG AAAAGCTTGCCTAGGTATGTTTTTGTTTTATACCAGACACGTTGAAATTATGCTTAAAAAGGTTTGTGCTTTTAGTCAAT ATAAATGTTATTGGAACTCCTAACTTTAGTTGTTTATTGTCTAAAACTACAGTTTTTCTATGAGACGCTTATGGGCAGGA AAGAGAACGACTGTTTTTGTAGTTCTGGTAGTGCCAAGTGTTGGTGGCATGGGCTGAAGGGTGTTAAAGTCACAAACACT AGGAATGCTGATGACAATGTTGATTTTAAGACCATGCTAGATGCGTTGCCAACTTGGGCAATTCATGACAATATTATCTT TAGGTTGGAATTGTAGTAGTGTTATCAACTGATTGGCATGCTTATGTAGAAGTTTGACGTTACTGCATAATGAAATTGCA TAGGTAGACCAGCCAATCTTGGATGTAGGCCACGAAACTGGATGCAATTTGTTAGTATGTTCTTCTTTTGGGTTGCCCTT GTCCTTGATGCCATATATAGGCCTGATTGTTGAATAAAATGCTTATTGTTGGGTGAAATTTGAATGAACAGGTCTTAAAA AATTGC
CDS sequence (LotjaGi3g1v0426900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCATGATCATATATCCAATCTGCCCAGAATCATCCTTCATGACATTCTGTCAAGGCTGTCGGAGAAAGATGCTGC TAGGACAAGTGTTCTGTCCAAGGCGTGGGCAGAAACATGGTCTACGTTTCCCATCTTGTCCTTCTGTGACACCAAGATTG TAGGAACGTTTCCCCAGCCAATGAAAGATTTTTTCAGGAAGAGAAGACTCTTCATTGATTATGTGAAGAGAACATTGCTG AGGTTCCGTGACCAAGTCTTAGCGGTCAAAGAGTTTAAGCTCGGTGTGAACAGTTTTGACCTTCATTACATGTCTAAGGA TGTTGATCTTTGGTTGAAGTTGGCTGGCGAGAGTGGTGTTGAGGTACTGCAGGTTTGCCTGCCTGATAGAGCTGATCAGG ATGGGGAAGGTCAGGAGCTTTGCTATGTGTTGCCGATAGGTGTTCTTGAATCGAAGTCGCTTAAGAAGATCGAGTTGATG GGGGGAATCCGCGTTGATCCAGCATTCATGAACTGTTCAATCAAGTTTTTCTCGTTGCGAGAACTATCATTATGGTCTGT CCTTCTGGGAGATGAACAGGCAATAGAGTATCTCATTTCTCGCTGTCCTTTGCTTGAATATGTAACTTTGAAGTGCTGTT CTGTGTTGAACCCTGGTGGAGCAGGAGGCCTGCTTGAGTCTAGGACCTGTCAAATAAAATCTATTAGGATGCGTGGTCTG CCGAAGCTAAAGGGAGTTGACGTTCAAGGAATACAGGAGGTTTATGTTGATGCCCCGAGTCTTGAGAATTTATGTTTTTG TCCTGGTGATTTCAACGCACCTTGTAAGTTGGAGTTTGAAAGGTGCACAAATTTGAAAGGGTTACACTTATGGTCTTTTA AGAGTACTATTATCACAGAGAAGTGGTTTATTGAACTGTTTTTTAAATTTCCCTTACTTGAGAGTTTGAAATTGGACAAT TGCACAATGTCTGAGAGAATTTGTATTTCAAGTGATAAACTCAAGGTCTTGATGTTGTCTGGTTGCTCTAACTTGAAGGA GGTTATCATTGATGCTCCTAATCTATCATCAGGTCAATTTTGTGGTGATGGTATTGGTGCAGAAAAACCAATTATATCTT TTCTGAGAAGTTCTAGTCAACTGGAAGTCAAAGTTATGATGTTCCTTGATCACCTGGATCTTTGTAACTTGAGGGGATTT CTCCAAAATTTCAAACCTCTAAATGCTTTGGCATCCCTTTCCCTATTTATCCATCAGCCGTTTGTGGATGAATTCAACCC AGTTGTCTTGCAAGATTCATCCTCTCTGCCGATCATCAAACTCTTGGACCTACGCTCTGTTCCAAAAAATGAAACTTTCT TTTGGCCTGTTGTTAATAGCTTACTTTCAAGTTGCTGCCCAGAAACTATTACGTTGAGCTTGCATTCTTTTTTCTGCAGC AGAGCATTCATTGAGTTTTTCTATGAGACGCTTATGGGCAGGAAAGAGAACGACTGTTTTTGTAGTTCTGGTAGTGCCAA GTGTTGGTGGCATGGGCTGAAGGGTGTTAAAGTCACAAACACTAGGAATGCTGATGACAATGTTGATTTTAAGACCATGC TAGATGCGTTGCCAACTTGGGCAATTCATGACAATATTATCTTTAGGTTGGAATTGTAG
Protein sequence (LotjaGi3g1v0426900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHDHISNLPRIILHDILSRLSEKDAARTSVLSKAWAETWSTFPILSFCDTKIVGTFPQPMKDFFRKRRLFIDYVKRTLL RFRDQVLAVKEFKLGVNSFDLHYMSKDVDLWLKLAGESGVEVLQVCLPDRADQDGEGQELCYVLPIGVLESKSLKKIELM GGIRVDPAFMNCSIKFFSLRELSLWSVLLGDEQAIEYLISRCPLLEYVTLKCCSVLNPGGAGGLLESRTCQIKSIRMRGL PKLKGVDVQGIQEVYVDAPSLENLCFCPGDFNAPCKLEFERCTNLKGLHLWSFKSTIITEKWFIELFFKFPLLESLKLDN CTMSERICISSDKLKVLMLSGCSNLKEVIIDAPNLSSGQFCGDGIGAEKPIISFLRSSSQLEVKVMMFLDHLDLCNLRGF LQNFKPLNALASLSLFIHQPFVDEFNPVVLQDSSSLPIIKLLDLRSVPKNETFFWPVVNSLLSSCCPETITLSLHSFFCS RAFIEFFYETLMGRKENDCFCSSGSAKCWWHGLKGVKVTNTRNADDNVDFKTMLDALPTWAIHDNIIFRLEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 293 | 292 | 6.2E-21 | ||
| SUPERFAMILY | 2 | 76 | 75 | 7.19E-10 | ||
| PANTHER | 3 | 550 | 548 | 5.1E-205 | – | |
| PANTHER | 3 | 550 | 548 | 5.1E-205 | – | |
| Pfam | 5 | 41 | 37 | 1.2E-4 | ||
| SUPERFAMILY | 169 | 352 | 184 | 7.26E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0426900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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