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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0427100 |
| Transcript ID | LotjaGi3g1v0427100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G21990.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LM64|FB16_ARATH Putative F-box protein At1g21990; TrEMBL-Plants: tr|A0A151SH40|A0A151SH40_CAJCA F-box/FBD/LRR-repeat protein family; Found in the gene: LotjaGi3g1v0427100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83819294..83822421) extracted from Lotus japonicus Gifu genome v1.2.
TCATCCCTCGCCGGAGCTCGGAGCTCCGGCGAGGACTGGCTCCAAACATTTTTGAACAAGAGGGATTGATGCCACAAATT TTTCCGGTCAGGGACCTGGTTCAGACGGCGAAACAAAGACAGGGACTAATTTGAGGATTAAGCCTAAAATAAAAAACAAA CAAGCCACTGTCGTATCTTTCATTTTTCAGTGTGTTCTTTCTTCCCTCTCTTCTCTCCCAAGAACACAAGAACTCAAGAA GCATTACCTTTCTGTGTAGCCTCAATTCTCGTGCAGGTGTGTCTCTAATTGCATTCCTCCTCTTACTGTGTCTGTGTGTG CGTCTTTCGTTTTAGTTTCTACATTTTCTCTTACTAATTCAAACCCTAAATCTCAAAACCCTGTTCGTTTCTTGAGAAAA AACCAGTTCGGAAAACAGTAATTTTCTGATGTTATCTCTTTTCTGAAATTGATTCACACACTGTTGCATGCTGGTTTTTT TAAGTAGGTGTAGTAGTTTAAACTTTAAACAAACCAACTTTGTAAAGGGGTACCAAATTGATTCAAAAGATTAGATTTTG TAACTTGGAATTGGAGATATCATTTACAGGGTTTAACGTAGTTTCTCCATTTCACATGTTTCTGTTGTTGTTTTAGTTGA TTTCAGGTGCGGTTTTAATCAAGAAATGGATGATGATCATATATCAGATTTGCCCATAATCATCCTCCATGACATTCTGT CAAGATTGCCGGAGAAAGATGCTGCTAGGGCAAGTGTTTTGTCCAAAGCGTGGGCAGAAACATTGTCTACGTTTCCCATC CTATCTTTCTCTATTTCCAAAATGATAGGAATGTGTTCTCTGACAACGGAAGAAGAATTTTCCATGATAAGAAAGAACTT TGTTGATTATGTGAAGAAAACATTGCTAAGGTTTCATGACCAAGGCTTAGCAATCAAAGAGTTACAGCTCAATGTGGACT GTTTTGACTTTCATTACATGTCTCGGCATGTTGATCTTTGGCTGAAATTGGCTGCTGAGAGTGGTGTTGAGGTACTGGAA CTTTGCCTGCCTTATAGATATGAACTGAAAGAGGAAGGTCGGTTGTGTTGCTATGTGTTGCCAACAGGTGTTCTTGAAGC CAAATCACTTAAGAAGTTAGTGTTGAAGGGGGGAATCTTCGTTGATCAAGCATTCATGAAACATTCAATCAAGTTTTTCT CGTTGCGAGAACTAACATTGCGGCGTGTCCTTCTGGAAGATGAGCAGGTAATAGAGTATCTCATTTCTCGCTGCCCTTTG ATTGAATATGTAACTTTAACGTTCTGTTCTGTGCTGAAACCTGGTGGAGCAGGAGGCCTGCTTAGGTCAAGGGCCTTTAA AATGAAATCTATGAGCATGCGCGGTCTGTTGAAGCTCAAGGGAGTTGACATTATAGGAATACAGGAGGTTTATGTTGATT CCCCGAGTCTTGAGAATTTATGTTATTGTGCTGATGATTTCTACTTAACTTGTAAGTTGGAGTTTGAAAGGTGCAAAAAT TTGAAAAGCTTACACTTGCGGCATTTTAAGAGTACTGTTATCACACAGAAGTGGTTTATTGAACTGTTTCTTAAATTTCC TTTCCTTGAGAGTTTGAAATTGGACAATTGCACAATGTCTGAGAGGATTTGTATTTCAAGTGATAAACTCACGGTATTGA TGTTGTCCAAATGCTCTAACTTGAAGGAGGTTATCATTGATGCTCCAAATCTATCATCATGTCAATATGTTGGTCATAGA GCACCAAAACCTATTATATCTTTTCTGAGAAGTTCTAGTCAACTAGAAGTCAATGTTGAGATGTACTTTGATCATCTAGA TCTTTCTGACTTGAGGGAATTTATCCAAAACTTCAAGCCTCAAAATGTTTTGGCATCTCTTTCCTTATCTATAGATCAGT CGATTGTGGTAAGTAAAAAGTAGCTATTGATTGATTCATTCTGTTTGCTTATTTACTTAATTTCTTATATATATACACCA TGGATTATGTAGGATGAATTCAACCCAATTGTCTTGCAAGATTCATCCCCTCCGCCGATCATTAAACACTTGAACCTACA ATCTGTTCCTGAAAATGAAACATTGTTTTGGCCTGTTGTTAATAGTTTACTTTCAAGTTGCTGCCCTGAAACTATTTCGT TGTGCTTGCATTCATATTGCTGCAGCAGAGCATTCATTGAGGTATGTCATTGTTTCCCATCTGCTGTTTTATTTAAAACT GTACTTCCAGGCTTCCAGCATTGAGAATCCTACACATTGTGATTATCCTCTCTGATAGAGGAAAATCTTGCCTAGATAAG TTTTTGTTTTCAACCATACACGTTGAAATTATGCTTTAAAAGGTTTGTGCTTTTAGTCAATATAAATGTTATTTGAACTT CTAACTCTATTTGTTTATTGTCTAAAACTACAGTTTCTCTATGAGACGCTTGTGGGCAGGAAAGAGAACGACTGTTTTTG CAGTTCTGGTAGTGCCAAGTGTTGGTGGCATGGACTGAAGGGTGTTAAAATCACAAACACTAGCAATACCGATGGGAATG CTGATTTTAAGACCACGTTAGATGCGTTGCCAACTTGGGGAGATTTTGACAATATTATCTTTAGGTTGGAATTGTAGTTT TGTTATCTACTGAGATGTTACTGCATAATGAGATGGGCATAGGTAGACCAACCAATCTTTGATGTAGGCCACGAAACTGG ACGAAATATGTTTATATGTTCCCCTTTTGGGTTGCCCTTGTCTTTGATGCGATAGATAGGCCTCATGGTTGCAATTTATT TGTGGTGGATATTAGAGCTTGAAAAGGAAGACAAGAACTGAGCAATTTATTTTGTGGTGGAATTTTAGAGCTTTTGCAAT TTACATTGATTTCACTGTCTGTCTTCTCACAGCAATCACAACAGGGTTGAGTGTTGGGATCATAGTATTCTGGCGTGGCC TGCTAGCCAGGGCCAAGAGTGGTACTGGCCAGAGAGCTTGTTCTGAACACTTGACTGTATCTATTTTAAATAGTAATGCA GTTGTTTAAATTTTACTGATATAACTGACTAAATTTTATTGGTTATCATATCTTTTAAAATGTTTTGTAATACGCCTAAA GATTTGAG
CDS sequence (LotjaGi3g1v0427100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATGATCATATATCAGATTTGCCCATAATCATCCTCCATGACATTCTGTCAAGATTGCCGGAGAAAGATGCTGC TAGGGCAAGTGTTTTGTCCAAAGCGTGGGCAGAAACATTGTCTACGTTTCCCATCCTATCTTTCTCTATTTCCAAAATGA TAGGAATGTGTTCTCTGACAACGGAAGAAGAATTTTCCATGATAAGAAAGAACTTTGTTGATTATGTGAAGAAAACATTG CTAAGGTTTCATGACCAAGGCTTAGCAATCAAAGAGTTACAGCTCAATGTGGACTGTTTTGACTTTCATTACATGTCTCG GCATGTTGATCTTTGGCTGAAATTGGCTGCTGAGAGTGGTGTTGAGGTACTGGAACTTTGCCTGCCTTATAGATATGAAC TGAAAGAGGAAGGTCGGTTGTGTTGCTATGTGTTGCCAACAGGTGTTCTTGAAGCCAAATCACTTAAGAAGTTAGTGTTG AAGGGGGGAATCTTCGTTGATCAAGCATTCATGAAACATTCAATCAAGTTTTTCTCGTTGCGAGAACTAACATTGCGGCG TGTCCTTCTGGAAGATGAGCAGGTAATAGAGTATCTCATTTCTCGCTGCCCTTTGATTGAATATGTAACTTTAACGTTCT GTTCTGTGCTGAAACCTGGTGGAGCAGGAGGCCTGCTTAGGTCAAGGGCCTTTAAAATGAAATCTATGAGCATGCGCGGT CTGTTGAAGCTCAAGGGAGTTGACATTATAGGAATACAGGAGGTTTATGTTGATTCCCCGAGTCTTGAGAATTTATGTTA TTGTGCTGATGATTTCTACTTAACTTGTAAGTTGGAGTTTGAAAGGTGCAAAAATTTGAAAAGCTTACACTTGCGGCATT TTAAGAGTACTGTTATCACACAGAAGTGGTTTATTGAACTGTTTCTTAAATTTCCTTTCCTTGAGAGTTTGAAATTGGAC AATTGCACAATGTCTGAGAGGATTTGTATTTCAAGTGATAAACTCACGGTATTGATGTTGTCCAAATGCTCTAACTTGAA GGAGGTTATCATTGATGCTCCAAATCTATCATCATGTCAATATGTTGGTCATAGAGCACCAAAACCTATTATATCTTTTC TGAGAAGTTCTAGTCAACTAGAAGTCAATGTTGAGATGTACTTTGATCATCTAGATCTTTCTGACTTGAGGGAATTTATC CAAAACTTCAAGCCTCAAAATGTTTTGGCATCTCTTTCCTTATCTATAGATCAGTCGATTGTGGATGAATTCAACCCAAT TGTCTTGCAAGATTCATCCCCTCCGCCGATCATTAAACACTTGAACCTACAATCTGTTCCTGAAAATGAAACATTGTTTT GGCCTGTTGTTAATAGTTTACTTTCAAGTTGCTGCCCTGAAACTATTTCGTTGTGCTTGCATTCATATTGCTGCAGCAGA GCATTCATTGAGTTTCTCTATGAGACGCTTGTGGGCAGGAAAGAGAACGACTGTTTTTGCAGTTCTGGTAGTGCCAAGTG TTGGTGGCATGGACTGAAGGGTGTTAAAATCACAAACACTAGCAATACCGATGGGAATGCTGATTTTAAGACCACGTTAG ATGCGTTGCCAACTTGGGGAGATTTTGACAATATTATCTTTAGGTTGGAATTGTAG
Protein sequence (LotjaGi3g1v0427100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDDHISDLPIIILHDILSRLPEKDAARASVLSKAWAETLSTFPILSFSISKMIGMCSLTTEEEFSMIRKNFVDYVKKTL LRFHDQGLAIKELQLNVDCFDFHYMSRHVDLWLKLAAESGVEVLELCLPYRYELKEEGRLCCYVLPTGVLEAKSLKKLVL KGGIFVDQAFMKHSIKFFSLRELTLRRVLLEDEQVIEYLISRCPLIEYVTLTFCSVLKPGGAGGLLRSRAFKMKSMSMRG LLKLKGVDIIGIQEVYVDSPSLENLCYCADDFYLTCKLEFERCKNLKSLHLRHFKSTVITQKWFIELFLKFPFLESLKLD NCTMSERICISSDKLTVLMLSKCSNLKEVIIDAPNLSSCQYVGHRAPKPIISFLRSSSQLEVNVEMYFDHLDLSDLREFI QNFKPQNVLASLSLSIDQSIVDEFNPIVLQDSSPPPIIKHLNLQSVPENETLFWPVVNSLLSSCCPETISLCLHSYCCSR AFIEFLYETLVGRKENDCFCSSGSAKCWWHGLKGVKITNTSNTDGNADFKTTLDALPTWGDFDNIIFRLEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 491 | 490 | 6.1E-19 | ||
| PANTHER | 3 | 549 | 547 | 2.0E-192 | – | |
| PANTHER | 3 | 549 | 547 | 2.0E-192 | – | |
| SUPERFAMILY | 3 | 52 | 50 | 5.23E-9 | ||
| Pfam | 5 | 45 | 41 | 1.7E-5 | ||
| SUPERFAMILY | 144 | 418 | 275 | 7.46E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0427100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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