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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0427500 |
| Transcript ID | LotjaGi3g1v0427500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fbd-associated f-box protein; TAIR: AT3G52680.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680; TrEMBL-Plants: tr|A0A151SH40|A0A151SH40_CAJCA F-box/FBD/LRR-repeat protein family; Found in the gene: LotjaGi3g1v0427500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83873667..83876850) extracted from Lotus japonicus Gifu genome v1.2.
GCCTAGCTAGATTTTATTTAGATTTTATTTTGCTCCCTATGCATTAAAGATAAAACTCTCACGATCATCTCTCTAACCAC ATTTCTCTCAGACAATTAATTCTCTCTCAAAAAGTTGACATGAAAGTAGACTGCAAAGTCAGTGAGACCATTAATTGGAA AGAAAAAATTTAGTAATAAAATTTGTTTCCTTTTTCAAGACACTCATCTGCTACTGCTACTGCTACTGCTACTGCTGCAA TACAAACATCCTTTTCACTCTTTATTTCCATTTTCAACATCTGTCTTAGGTGAAGCTCAGTTTTTATTCTTACTTCATCC GGCACCTGATCTCTTTCTCATATTTGGCTTACCATTTGACAGGAAAGGTTTTGGATTCAATTTGGTGTTACGTTTTCCTT CTCAGTGTGTAGCAAAAGGTTTGTTTTGTTTGTTTGTTCTGCTATTCCTCTTTTGTTCTTTTTCCTCTGAAAGCCTTAAG GGTGTCTATTTCTTGAATGTCTCTTCAATTTCTCTGTTTTACCAAACACTTTCTAGCATTACCCACTGTTATGTGCTGGT TTTTGAACTAGGTGTTGTAGTTTAAACTTTACTTTAAATATACCAACTTTGTAAAGGGGTACTATATTGATTCAAAAGGT TCGATTTTGTAAGATATGTTGGTTTAACTTTAACGTAGTTTCTCCATTTCACATGTTTCTGTTGTTGTTTTAGTTGATTT CAGGTGCGGTTTTAATCAACAAATGGATGATGATCATATATCAGATTTGCCCATATTCATCCTCCATGACATTCTGTCAA GGCTGCCGGAGAAAGATGCTACTAGGACAAGTGTTTTGTCCAAGGCGTGGTGGTCTACGTTTCCCATCCTGTCTTTCTTT TACAACCGAAGGGTAGGAAAGGCTTCTAAGACAACGGAAGAAGGTTTTTTCATGAAGAGAAAGAACTTTGGTGATAATTT GAAGAAAACATTGCTAAGGTTCCGTGACCAAGGCTTAGCAATCAAAGAGTTTAAGCTCAGTGTGAACTTTCATGACCTTT ATTACAATTCTCGGGATGTTGATCTTTGGTTGAAGTTGGCTGGTGAGAGTGGTGTTGAGGTACTGCATCTCGACCTGCCT GATAGAGCTGAAGATGAATGGGAAGGTCAGGACCTTGGCTATGTGTTGCCGACAAGTGTTCTTGAAGCCAAATCACTTAA GATGATGCACTTGATTGGCGGAATCCACATTGATCAAGCATTCATGAACCATTCAATCAAGTTTTTCTCATTGCGAAAAC TATTATTGTGGTATGTCCTTGTTGAAGATGAGCAGGTAATAGAGAATCTCATTTCTCGCTGCCCTTTGATTGAATATATA TCTTTATTCTGCGGCTCTGTGTTGAACCCTGGTGGAGGAGCAGAAGGCCTGTTGAATTCTTTGAGCATGCGTGGTCTGCT GAAGCTCAAGAAAGTTGACATTATAGGAATTCAGGAGGTTTATATTGATTCTCCGAGTCTTGAGAATTTATATTACCGGG CTGTTAATTTCGACACAACTTGTAAGTTGGAGTTTGAAAGGTGCAAAAATTTGAAAAGCTTACACTTGGGGCATTTTAAG AGTACTGTTATCACACAGAAGTGGTTTATTGAACTGTTTCTTAAATTTCATTTCCTTGAGATTTTGAAATTGGACAATTG CACAATGTCTGAGAGGATTTGTATTTCAAGTGATAAACTCACGGTATTGATGTTGTCCAAATGCTCTAACTTGAAGGAGG TTATCATTGATGCTCCAAATCTATCATCATGTCAATATGTTGGTCATGGTGCACCAAAACCTATTATATCTTTTCTGAGA AGTTCTAGTCAACTAGAAGTCAATGTTGAGATGTACCTTGATCATCTAGATCTTTCTGACTTGAGGGAATTTATCCAAAA CTTCAAGCCTCAAAATGTTTTGGCATCTCTTTCCTTATCTATAGATCAGTCGATTGTGGTAAGTAAAGTAGCTATTGATT GATTCATTCTGTTTGCTTATTTACTTAATTTCTTAATTAGTAAAAAAAAAACTTAATTTCTTATATATATATATATATAT ATATATACACCATGGATTATGTAGGATGAATTCAACCCAGTTGTCTTGCAAGATTCATCCTCTCCGCCGATCATTAAACA CTTGAAGCTACAATGTGTTCCTGAAAATGAAACATTGTTTCGGCCTGTTGTTAATAGCTTACTTTCAAGTTGCTGCCCTG AAACTATCTTGTTGTGCTTTGTTTCATTTTACTGCAGCAGAGCATTCATTGAGGTATGTCATTGTTTCCCCATTTTCCCG TTTTATTGAAAACTGTACTTTCAGGCTTCCAGCATTGAGATTCCTACACATTGTGATTATCCTATCTGATAGAGGAAAAG CTTGCCTAGATATGTTTTTGTTTTATACCATACACGTTGAAATTATGCTTTAAAAGGTTTGTGCTTTTAGTCAATATAAA TGTTATGTTAACTTCTAACTCTAGTTGTTTATTATCTAAAACAACAGTTTTTCTATGAGACGCTTATGGGCAGGAAAGAG AAAGACTGTTTTTGCTGTTCTGGTAGTGCCAAGTGTTGGTGGCATGGGCTGAAGGGTGTTCAAGTCACAAACTCTAGGAA TGCTGATGAGAATGTTGATTTCAAGACCATGTTAGATGCGTTGCCAACTTGCGGAGATTTTAGCGATATTATCTTTAGGT TGGAATTGTAGTGTTGTTATCTACTGATATGTAAGCTTATGTAGAAATTTGACATTACTGCATGATGAGATGGGCATAGG TAGACCAACCAATCTTGGATGTAGGCCACGAAACTGGATGAAATATGTTTATATGTTCCCCTTTTCGGTTGCCCTTGTCC TTGATGCCATAGATAGGCCTCAGCCCTCATGGTTACTATTGATCTGTGTTGGAATTTTAGAGCTTTGGATCCAGACAAGA ACTGAGCAATTTATTTTGTGGTGGAATTTTAGAGCTTTTGCAATTTACATTCATTTCACTGTCTGTCTTCTCACAGCACT CACAAGTCACAACAGGGTTGAGTGTTGGGATCATAGTATTCTGGCGTGGCCTGCTAGCCAGGGCCAAGAGTGGTACTTGC CAGAGAGCTTGTTCTAAACACTTGATTGTATCCATTTCAAATAGTAATACAGTTTAAGTTTTAC
CDS sequence (LotjaGi3g1v0427500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATGATCATATATCAGATTTGCCCATATTCATCCTCCATGACATTCTGTCAAGGCTGCCGGAGAAAGATGCTAC TAGGACAAGTGTTTTGTCCAAGGCGTGGTGGTCTACGTTTCCCATCCTGTCTTTCTTTTACAACCGAAGGGTAGGAAAGG CTTCTAAGACAACGGAAGAAGGTTTTTTCATGAAGAGAAAGAACTTTGGTGATAATTTGAAGAAAACATTGCTAAGGTTC CGTGACCAAGGCTTAGCAATCAAAGAGTTTAAGCTCAGTGTGAACTTTCATGACCTTTATTACAATTCTCGGGATGTTGA TCTTTGGTTGAAGTTGGCTGGTGAGAGTGGTGTTGAGGTACTGCATCTCGACCTGCCTGATAGAGCTGAAGATGAATGGG AAGGTCAGGACCTTGGCTATGTGTTGCCGACAAGTGTTCTTGAAGCCAAATCACTTAAGATGATGCACTTGATTGGCGGA ATCCACATTGATCAAGCATTCATGAACCATTCAATCAAGTTTTTCTCATTGCGAAAACTATTATTGTGGTATGTCCTTGT TGAAGATGAGCAGGTAATAGAGAATCTCATTTCTCGCTGCCCTTTGATTGAATATATATCTTTATTCTGCGGCTCTGTGT TGAACCCTGGTGGAGGAGCAGAAGGCCTGTTGAATTCTTTGAGCATGCGTGGTCTGCTGAAGCTCAAGAAAGTTGACATT ATAGGAATTCAGGAGGTTTATATTGATTCTCCGAGTCTTGAGAATTTATATTACCGGGCTGTTAATTTCGACACAACTTG TAAGTTGGAGTTTGAAAGGTGCAAAAATTTGAAAAGCTTACACTTGGGGCATTTTAAGAGTACTGTTATCACACAGAAGT GGTTTATTGAACTGTTTCTTAAATTTCATTTCCTTGAGATTTTGAAATTGGACAATTGCACAATGTCTGAGAGGATTTGT ATTTCAAGTGATAAACTCACGGTATTGATGTTGTCCAAATGCTCTAACTTGAAGGAGGTTATCATTGATGCTCCAAATCT ATCATCATGTCAATATGTTGGTCATGGTGCACCAAAACCTATTATATCTTTTCTGAGAAGTTCTAGTCAACTAGAAGTCA ATGTTGAGATGTACCTTGATCATCTAGATCTTTCTGACTTGAGGGAATTTATCCAAAACTTCAAGCCTCAAAATGTTTTG GCATCTCTTTCCTTATCTATAGATCAGTCGATTGTGGATGAATTCAACCCAGTTGTCTTGCAAGATTCATCCTCTCCGCC GATCATTAAACACTTGAAGCTACAATGTGTTCCTGAAAATGAAACATTGTTTCGGCCTGTTGTTAATAGCTTACTTTCAA GTTGCTGCCCTGAAACTATCTTGTTGTGCTTTGTTTCATTTTACTGCAGCAGAGCATTCATTGAGTTTTTCTATGAGACG CTTATGGGCAGGAAAGAGAAAGACTGTTTTTGCTGTTCTGGTAGTGCCAAGTGTTGGTGGCATGGGCTGAAGGGTGTTCA AGTCACAAACTCTAGGAATGCTGATGAGAATGTTGATTTCAAGACCATGTTAGATGCGTTGCCAACTTGCGGAGATTTTA GCGATATTATCTTTAGGTTGGAATTGTAG
Protein sequence (LotjaGi3g1v0427500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDDHISDLPIFILHDILSRLPEKDATRTSVLSKAWWSTFPILSFFYNRRVGKASKTTEEGFFMKRKNFGDNLKKTLLRF RDQGLAIKEFKLSVNFHDLYYNSRDVDLWLKLAGESGVEVLHLDLPDRAEDEWEGQDLGYVLPTSVLEAKSLKMMHLIGG IHIDQAFMNHSIKFFSLRKLLLWYVLVEDEQVIENLISRCPLIEYISLFCGSVLNPGGGAEGLLNSLSMRGLLKLKKVDI IGIQEVYIDSPSLENLYYRAVNFDTTCKLEFERCKNLKSLHLGHFKSTVITQKWFIELFLKFHFLEILKLDNCTMSERIC ISSDKLTVLMLSKCSNLKEVIIDAPNLSSCQYVGHGAPKPIISFLRSSSQLEVNVEMYLDHLDLSDLREFIQNFKPQNVL ASLSLSIDQSIVDEFNPVVLQDSSSPPIIKHLKLQCVPENETLFRPVVNSLLSSCCPETILLCFVSFYCSRAFIEFFYET LMGRKEKDCFCCSGSAKCWWHGLKGVQVTNSRNADENVDFKTMLDALPTCGDFSDIIFRLEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 458 | 458 | - | – | |
| Gene3D | 2 | 246 | 245 | 2.9E-13 | ||
| SUPERFAMILY | 3 | 49 | 47 | 5.76E-8 | ||
| PANTHER | 3 | 540 | 538 | 1.0E-183 | – | |
| PANTHER | 3 | 540 | 538 | 1.0E-183 | – | |
| SUPERFAMILY | 142 | 462 | 321 | 5.89E-10 | – | |
| Pfam | 176 | 201 | 26 | 0.071 | ||
| Gene3D | 250 | 471 | 222 | 7.6E-6 | ||
| Phobius | 459 | 478 | 20 | - | – | |
| Phobius | 479 | 542 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0427500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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