Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0427500 |
Transcript ID | LotjaGi3g1v0427500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Fbd-associated f-box protein; TAIR: AT3G52680.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680; TrEMBL-Plants: tr|A0A151SH40|A0A151SH40_CAJCA F-box/FBD/LRR-repeat protein family; Found in the gene: LotjaGi3g1v0427500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83873695..83876762) extracted from Lotus japonicus Gifu genome v1.2.
CAGACAATTAATTCTCTCTCAAAAAGTTGACATGAAAGTAGACTGCAAAGTCAGTGAGACCATTAATTGGAAAGAAAAAA TTTAGTAATAAAATTTGTTTCCTTTTTCAAGACACTCATCTGCTACTGCTACTGCTACTGCTACTGCTGCAATACAAACA TCCTTTTCACTCTTTATTTCCATTTTCAACATCTGTCTTAGGTGAAGCTCAGTTTTTATTCTTACTTCATCCGGCACCTG ATCTCTTTCTCATATTTGGCTTACCATTTGACAGGAAAGGTTTTGGATTCAATTTGGTGTTACGTTTTCCTTCTCAGTGT GTAGCAAAAGGTTTGTTTTGTTTGTTTGTTCTGCTATTCCTCTTTTGTTCTTTTTCCTCTGAAAGCCTTAAGGGTGTCTA TTTCTTGAATGTCTCTTCAATTTCTCTGTTTTACCAAACACTTTCTAGCATTACCCACTGTTATGTGCTGGTTTTTGAAC TAGGTGTTGTAGTTTAAACTTTACTTTAAATATACCAACTTTGTAAAGGGGTACTATATTGATTCAAAAGGTTCGATTTT GTAAGATATGTTGGTTTAACTTTAACGTAGTTTCTCCATTTCACATGTTTCTGTTGTTGTTTTAGTTGATTTCAGGTGCG GTTTTAATCAACAAATGGATGATGATCATATATCAGATTTGCCCATATTCATCCTCCATGACATTCTGTCAAGGCTGCCG GAGAAAGATGCTACTAGGACAAGTGTTTTGTCCAAGGCGTGGTGGTCTACGTTTCCCATCCTGTCTTTCTTTTACAACCG AAGGGTAGGAAAGGCTTCTAAGACAACGGAAGAAGGTTTTTTCATGAAGAGAAAGAACTTTGGTGATAATTTGAAGAAAA CATTGCTAAGGTTCCGTGACCAAGGCTTAGCAATCAAAGAGTTTAAGCTCAGTGTGAACTTTCATGACCTTTATTACAAT TCTCGGGATGTTGATCTTTGGTTGAAGTTGGCTGGTGAGAGTGGTGTTGAGGTACTGCATCTCGACCTGCCTGATAGAGC TGAAGATGAATGGGAAGGTCAGGACCTTGGCTATGTGTTGCCGACAAGTGTTCTTGAAGCCAAATCACTTAAGATGATGC ACTTGATTGGCGGAATCCACATTGATCAAGCATTCATGAACCATTCAATCAAGTTTTTCTCATTGCGAAAACTATTATTG TGGTATGTCCTTGTTGAAGATGAGCAGGTAATAGAGAATCTCATTTCTCGCTGCCCTTTGATTGAATATATATCTTTATT CTGCGGCTCTGTGTTGAACCCTGGTGGAGGAGCAGAAGGCCTGTTGAATTCTTTGAGCATGCGTGGTCTGCTGAAGCTCA AGAAAGTTGACATTATAGGAATTCAGGAGGTTTATATTGATTCTCCGAGTCTTGAGAATTTATATTACCGGGCTGTTAAT TTCGACACAACTTGTAAGTTGGAGTTTGAAAGGTGCAAAAATTTGAAAAGCTTACACTTGGGGCATTTTAAGAGTACTGT TATCACACAGAAGTGGTTTATTGAACTGTTTCTTAAATTTCATTTCCTTGAGATTTTGAAATTGGACAATTGCACAATGT CTGAGAGGATTTGTATTTCAAGTGATAAACTCACGGTATTGATGTTGTCCAAATGCTCTAACTTGAAGGAGGTTATCATT GATGCTCCAAATCTATCATCATGTCAATATGTTGGTCATGGTGCACCAAAACCTATTATATCTTTTCTGAGAAGTTCTAG TCAACTAGAAGTCAATGTTGAGATGTACCTTGATCATCTAGATCTTTCTGACTTGAGGGAATTTATCCAAAACTTCAAGC CTCAAAATGTTTTGGCATCTCTTTCCTTATCTATAGATCAGTCGATTGTGGTAAGTAAAGTAGCTATTGATTGATTCATT CTGTTTGCTTATTTACTTAATTTCTTAATTAGTAAAAAAAAAACTTAATTTCTTATATATATATATATATATATATATAC ACCATGGATTATGTAGGATGAATTCAACCCAGTTGTCTTGCAAGATTCATCCTCTCCGCCGATCATTAAACACTTGAAGC TACAATGTGTTCCTGAAAATGAAACATTGTTTCGGCCTGTTGTTAATAGCTTACTTTCAAGTTGCTGCCCTGAAACTATC TTGTTGTGCTTTGTTTCATTTTACTGCAGCAGAGCATTCATTGAGGTATGTCATTGTTTCCCCATTTTCCCGTTTTATTG AAAACTGTACTTTCAGGCTTCCAGCATTGAGATTCCTACACATTGTGATTATCCTATCTGATAGAGGAAAAGCTTGCCTA GATATGTTTTTGTTTTATACCATACACGTTGAAATTATGCTTTAAAAGGTTTGTGCTTTTAGTCAATATAAATGTTATGT TAACTTCTAACTCTAGTTGTTTATTATCTAAAACAACAGTTTTTCTATGAGACGCTTATGGGCAGGAAAGAGAAAGACTG TTTTTGCTGTTCTGGTAGTGCCAAGTGTTGGTGGCATGGGCTGAAGGGTGTTCAAGTCACAAACTCTAGGAATGCTGATG AGAATGTTGATTTCAAGACCATGTTAGATGCGTTGCCAACTTGCGGAGATTTTAGCGATATTATCTTTAGGTTGGAATTG TAGTGTTGTTATCTACTGATATGTAAGCTTATGTAGAAATTTGACATTACTGCATGATGAGATGGGCATAGGTAGACCAA CCAATCTTGGATGTAGGCCACGAAACTGGATGAAATATGTTTATATGTTCCCCTTTTCGGTTGCCCTTGTCCTTGATGCC ATAGATAGGCCTCAGCCCTCATGGTTACTATTGATCTGTGTTGGAATTTTAGAGCTTTGGATCCAGACAAGAACTGAGCA ATTTATTTTGTGGTGGAATTTTAGAGCTTTTGCAATTTACATTCATTTCACTGTCTGTCTTCTCACAGCACTCACAAGTC ACAACAGGGTTGAGTGTTGGGATCATAGTATTCTGGCGTGGCCTGCTAGCCAGGGCCAAGAGTGGTACTTGCCAGAGAGC TTGTTCTAAACACTTGATTGTATCCATT
CDS sequence (LotjaGi3g1v0427500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATGATCATATATCAGATTTGCCCATATTCATCCTCCATGACATTCTGTCAAGGCTGCCGGAGAAAGATGCTAC TAGGACAAGTGTTTTGTCCAAGGCGTGGTGGTCTACGTTTCCCATCCTGTCTTTCTTTTACAACCGAAGGGTAGGAAAGG CTTCTAAGACAACGGAAGAAGGTTTTTTCATGAAGAGAAAGAACTTTGGTGATAATTTGAAGAAAACATTGCTAAGGTTC CGTGACCAAGGCTTAGCAATCAAAGAGTTTAAGCTCAGTGTGAACTTTCATGACCTTTATTACAATTCTCGGGATGTTGA TCTTTGGTTGAAGTTGGCTGGTGAGAGTGGTGTTGAGGTACTGCATCTCGACCTGCCTGATAGAGCTGAAGATGAATGGG AAGGTCAGGACCTTGGCTATGTGTTGCCGACAAGTGTTCTTGAAGCCAAATCACTTAAGATGATGCACTTGATTGGCGGA ATCCACATTGATCAAGCATTCATGAACCATTCAATCAAGTTTTTCTCATTGCGAAAACTATTATTGTGGTATGTCCTTGT TGAAGATGAGCAGGTAATAGAGAATCTCATTTCTCGCTGCCCTTTGATTGAATATATATCTTTATTCTGCGGCTCTGTGT TGAACCCTGGTGGAGGAGCAGAAGGCCTGTTGAATTCTTTGAGCATGCGTGGTCTGCTGAAGCTCAAGAAAGTTGACATT ATAGGAATTCAGGAGGTTTATATTGATTCTCCGAGTCTTGAGAATTTATATTACCGGGCTGTTAATTTCGACACAACTTG TAAGTTGGAGTTTGAAAGGTGCAAAAATTTGAAAAGCTTACACTTGGGGCATTTTAAGAGTACTGTTATCACACAGAAGT GGTTTATTGAACTGTTTCTTAAATTTCATTTCCTTGAGATTTTGAAATTGGACAATTGCACAATGTCTGAGAGGATTTGT ATTTCAAGTGATAAACTCACGGTATTGATGTTGTCCAAATGCTCTAACTTGAAGGAGGTTATCATTGATGCTCCAAATCT ATCATCATGTCAATATGTTGGTCATGGTGCACCAAAACCTATTATATCTTTTCTGAGAAGTTCTAGTCAACTAGAAGTCA ATGTTGAGATGTACCTTGATCATCTAGATCTTTCTGACTTGAGGGAATTTATCCAAAACTTCAAGCCTCAAAATGTTTTG GCATCTCTTTCCTTATCTATAGATCAGTCGATTGTGGATGAATTCAACCCAGTTGTCTTGCAAGATTCATCCTCTCCGCC GATCATTAAACACTTGAAGCTACAATGTGTTCCTGAAAATGAAACATTGTTTCGGCCTGTTGTTAATAGCTTACTTTCAA GTTGCTGCCCTGAAACTATCTTGTTGTGCTTTGTTTCATTTTACTGCAGCAGAGCATTCATTGAGTTTTTCTATGAGACG CTTATGGGCAGGAAAGAGAAAGACTGTTTTTGCTGTTCTGGTAGTGCCAAGTGTTGGTGGCATGGGCTGAAGGGTGTTCA AGTCACAAACTCTAGGAATGCTGATGAGAATGTTGATTTCAAGACCATGTTAGATGCGTTGCCAACTTGCGGAGATTTTA GCGATATTATCTTTAGGTTGGAATTGTAG
Protein sequence (LotjaGi3g1v0427500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDDHISDLPIFILHDILSRLPEKDATRTSVLSKAWWSTFPILSFFYNRRVGKASKTTEEGFFMKRKNFGDNLKKTLLRF RDQGLAIKEFKLSVNFHDLYYNSRDVDLWLKLAGESGVEVLHLDLPDRAEDEWEGQDLGYVLPTSVLEAKSLKMMHLIGG IHIDQAFMNHSIKFFSLRKLLLWYVLVEDEQVIENLISRCPLIEYISLFCGSVLNPGGGAEGLLNSLSMRGLLKLKKVDI IGIQEVYIDSPSLENLYYRAVNFDTTCKLEFERCKNLKSLHLGHFKSTVITQKWFIELFLKFHFLEILKLDNCTMSERIC ISSDKLTVLMLSKCSNLKEVIIDAPNLSSCQYVGHGAPKPIISFLRSSSQLEVNVEMYLDHLDLSDLREFIQNFKPQNVL ASLSLSIDQSIVDEFNPVVLQDSSSPPIIKHLKLQCVPENETLFRPVVNSLLSSCCPETILLCFVSFYCSRAFIEFFYET LMGRKEKDCFCCSGSAKCWWHGLKGVQVTNSRNADENVDFKTMLDALPTCGDFSDIIFRLEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 458 | 458 | - | – | |
Gene3D | 2 | 246 | 245 | 2.9E-13 | ||
SUPERFAMILY | 3 | 49 | 47 | 5.76E-8 | ||
PANTHER | 3 | 540 | 538 | 1.0E-183 | – | |
PANTHER | 3 | 540 | 538 | 1.0E-183 | – | |
SUPERFAMILY | 142 | 462 | 321 | 5.89E-10 | – | |
Pfam | 176 | 201 | 26 | 0.071 | ||
Gene3D | 250 | 471 | 222 | 7.6E-6 | ||
Phobius | 459 | 478 | 20 | - | – | |
Phobius | 479 | 542 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0427500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…