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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0428900 |
| Transcript ID | LotjaGi3g1v0428900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; TAIR: AT3G21310.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|Q4WXH8|DPOE_ASPFU DNA polymerase epsilon catalytic subunit A; TrEMBL-Plants: tr|A0A072TM28|A0A072TM28_MEDTR Core-2/I-branching enzyme; Found in the gene: LotjaGi3g1v0428900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84031153..84031855) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTGATTTTAAGAAATTTCTAATTAGCCATCTCCTTCGCAGGTTGCAGAGTGGGGAATGATGAGTATGTGTGATTCTG AAAGAAGACTTCTGGCGAATGCATTGCTTGATATTTCAAACGAATGGTTTATCCTCCTGTCTGAGTCATGCATTCCTCTC CAGAACTTCAGCATTATATACCGTTACATATCACGCTCAAGGTACAGCTTTATGGGTGCAGTTGATGAACCCGGTCCTTA CGGGAGAGGACGTTACGATGAAAACATGGCACCTGAGATCAACATGAGCGATTGGCGAAAGGGGTCTCAGTGGTTCGAAA TTAATCGAGAACTTGCTATTAGAATAGTTGAAGACAGCACTTACTATCCGAAGCTCAGAGATTTCTGCAGACCACACAAA TGCTATGTTGATGAGCACTATTTCCAGACAATGTTAACCATTAACACTCCTCATCTTTTGGCAAATAGGAGCCTCACTTA TGTGGACTGGTCTAGGGGTGGTGCCCACCCAGCTACCTTTGGGAAGGATGATATCAAAGAGGAGTTCTTCAAGAAAGTTT TGCAAGAGCAGACATGTCTTTATAATAACCAGCCATCTTCCCTTTGTTTCTTATTCGCGAGAAAGTTTGCACCGAATGCT TTGGGTCCTCTTTTAGATATAGCACCCAAAGTTCTAGGAATATAAAAATTTCATGGCTTCTGA
CDS sequence (LotjaGi3g1v0428900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGTATGTGTGATTCTGAAAGAAGACTTCTGGCGAATGCATTGCTTGATATTTCAAACGAATGGTTTATCCTCCT GTCTGAGTCATGCATTCCTCTCCAGAACTTCAGCATTATATACCGTTACATATCACGCTCAAGGTACAGCTTTATGGGTG CAGTTGATGAACCCGGTCCTTACGGGAGAGGACGTTACGATGAAAACATGGCACCTGAGATCAACATGAGCGATTGGCGA AAGGGGTCTCAGTGGTTCGAAATTAATCGAGAACTTGCTATTAGAATAGTTGAAGACAGCACTTACTATCCGAAGCTCAG AGATTTCTGCAGACCACACAAATGCTATGTTGATGAGCACTATTTCCAGACAATGTTAACCATTAACACTCCTCATCTTT TGGCAAATAGGAGCCTCACTTATGTGGACTGGTCTAGGGGTGGTGCCCACCCAGCTACCTTTGGGAAGGATGATATCAAA GAGGAGTTCTTCAAGAAAGTTTTGCAAGAGCAGACATGTCTTTATAATAACCAGCCATCTTCCCTTTGTTTCTTATTCGC GAGAAAGTTTGCACCGAATGCTTTGGGTCCTCTTTTAGATATAGCACCCAAAGTTCTAGGAATATAA
Protein sequence (LotjaGi3g1v0428900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSMCDSERRLLANALLDISNEWFILLSESCIPLQNFSIIYRYISRSRYSFMGAVDEPGPYGRGRYDENMAPEINMSDWR KGSQWFEINRELAIRIVEDSTYYPKLRDFCRPHKCYVDEHYFQTMLTINTPHLLANRSLTYVDWSRGGAHPATFGKDDIK EEFFKKVLQEQTCLYNNQPSSLCFLFARKFAPNALGPLLDIAPKVLGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 207 | 207 | 2.9E-137 | – | |
| PANTHER | 1 | 207 | 207 | 2.9E-137 | – | |
| Pfam | 2 | 167 | 166 | 4.1E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0428900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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