Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0429200 |
Transcript ID | LotjaGi3g1v0429200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein EARLY FLOWERING 3; TAIR: AT3G21320.1 EARLY FLOWERING protein; Swiss-Prot: sp|Q9SNQ6|HD3B_ORYSJ Protein HEADING DATE 3B; TrEMBL-Plants: tr|A0A0B2PPM7|A0A0B2PPM7_GLYSO Protein FAR1-RELATED SEQUENCE 11; Found in the gene: LotjaGi3g1v0429200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84038498..84042668) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAGATTTCAACATGTGGTAGCAATTCACTTACCTCTTTGGCTCTTCCTTGTCCTTCGCCAAAGCAGATACACACAAG AGTTTTTGATGAGAGACCCGGTCACACTGCTTCTGTCTCCAATCATGAATCATACCATTTTAGCATCACTCTCCCTCATT GATGAGTTTTTTCTATCCAACATGGTAGGGTCATCACTCACCATGCAAGTGCAGCTGTTCTGAACAAAACTTGGGTCCAT AATACTACCCCATAACAAGTTTTGCTCTCACTTTCTAGTTTTTTTATTTGCTTTTATTGGCAGTGCCTCGTGGATTCAGG GTGACCCTTTGTTTCTATTGAATCTATCCTCATTCAATCTTTTTTCTTTAATATCTTTGATCTTTCCTTCACTTTTGTAC TTGCTGAGTATTGTCTCCTTGTGTTCTGGCGCATTTCTAAGTGAATTCATGAATTTGTTGCTTGCCTATCATTGGTTTTC AGCTGAAAAGTTCAATATTCTAGAAGTAGGTGCCTTTCGATCTTTGTTTTTCTCCTCTTATTTCTAATGTGTTCTTCCTT CCCCTTATTAATAATGTACGATCAGGAAAACCTCTTTGAAGTTGGTTAATCTGTTTTTTTTTGTGTTGCGCCGCAAATTG CCTAGTGGATCGATTGATTTGTTTTCATAGGGTTGGAATTTCTTGTCCTAACAGAACTTAGAGATTTGAGTTTTGAATAC TCCTCCTGAAGTGGTTTTTCCAACTGACAAACACGTGCTGGATTGACAATTTTCTAAGAATGGAAAGGGAATTTTTGTGA AATTTTTGTTAGTGAATAGGGTGTAGAAAGAGGAGTAAAGATGAAAGGGGCAATTGGTGAGGGGAAGGAGATGATTAGCC CAATGTTTCCTAGGTTGCATGTTAAAGATGCAGAGAAAGGAGGGCCAAAAGCACCTCCAAGGAATAAGATGGCTCTCTAT GAACAATTCAGCATCCCTTCTTCTCAAGGTCAATTTGCATCATCAGAATCAGGATCACCATCCTTGTTTCCTCTCCTGCT AAGAAACTGCACACTTCCTCCAACATCTACCCAAGTGAGTCAAGTAATGTTCATTCAATTTTTGCCTTTAATCGATTAAT TAATAGATGGAAAGAAACTCACATTGTTTTTCCAATCTCTCCATAAGCTTACCATGCATGTTTAGAAACTCGTTCGGAAA CCACGGTGAAACCAAAATCATAGTGGACAACAACTTCCTTTAGCTTTTGCTTCTGTCCACTGTGATTTTGTCTTGAGTTT TTCGAACAAGTAGAAGCTTGAATGAAGGCACTAAGTGCCATAATCTTATAATACTACTTGACATTGTAACCAGAAGAAAA TAGAAGTTTTTATGTATAGTACATAGTAAAACTTTTGAGAATAATTAAGCTTGGAATCTTTCAACATAGTTCAAGTAAGA CTGTAAGAGTTAATAAAAAGTACTTAACCCTTAAATTGATATTGGAGCACACATCTTTTGTCTCTCTTTCTTCTTTTGTA ACCTACAAACGGCCAGAATTTAAACTTCTTGTTCTCATTGTCACTTACTGGTGTATTTAATTTGTTTCAGCAGGGTAGTT TCCTCACTAGTAAGAATTCCCTGAAAACACTTGGTGAGGATGCTTTTATGACTTCTGGTTCTGCCTGTGAGAGAAATTCA AGCTGCGGCATCATTCAAAATGATAAAGATGATGATAAACTCGCAAGAAATAATTTGAACTGTTCGCTCAAAAGTCTACA CTCATTTAGAAACAAGGTGAATTCATCTGAAGCCATAGATCTGAATTCAGCAAAATATGGGAAGAACCAGATGGAAGAGC CTATAGTTGTGAGACAAATTGGTCTGAAGCCAGAGGAAGGGCCTCCTCACCCATTAGATGGTTTTGGTGATATGAGAGAT GATGAATCCTTAAACTCATTGGTGAAAGGAAGGAGTTCTACGTCAATGAAGAGAGAACATGGATCATTGAAAGGAGAAAT TAGAAGTATTTCAGTAGATAGCTTAAAAACATTGCAAGGTAGGAATGTTCATACACATGAAGAGCATGCAGCTTTTGAGG ACAATAAAGATGAGGAGGCTTATAGGGATCATGATACCTTAAATAAACCAAGTTCAGAATGTTTGTTTGGGAGGGATATT TCCCCTGACAGTGTTGTAGGAGTTATAGGTGAAAAGGAATTTTGGAAAGCAAGAAGAACTATCATCAAGTAAGTTTGTCT GTCTAGTATTATGTGTTTATGATTTGGCCTTTCTTTTTGTTAAACTTTTTGTATTTTCCTTTTTAGGGAAATTTGGTGGA ATTAGGGAAATTTTGTAGGATGATGGGTTAAGATTTGTAACATTGGGATATGTATCTGACCAGGCAAACAAATTTACTTA TTTGAAAATGAACTCAACCTAAAGAAATCATGGTAGTTGAGATGGAAATAGAGAAAACATCTACTGATCTAGACATCATG TCCAAGAGAAAGAAATGCATTGCACTTCTTGAGACTAAGCACTCATAATTTCACTAGTTCATCTTTTTGTACATTCAAAT AGTACATACATCCAACAGTCACCAGAGTGAGAAAATAAGAGAAGAGCTCACGTTATAGATGTGATATGTGATATACTAAT ATATGATAGATGTGATAATAAGAGAAGATTAAAGAAAAAATGTGGTGTCAGAAGGGTGTCTGCGCTGTTTGTATGTCTAT CGTTCCTGTTTCAAGTTTATGTGTTTTGCTATAATCTTAAACCTGATACTTATATTGCTGTATGCAGTCAACAGAGAATC TTCCTCATGCAAGTGTTTGAGCTCCACAGACTGATAAAGGTAATTATTGACTTATGTGTGCCTGACTTTCACTCGGATTA TGATATGAGAAGCAACTAAATCATTTCTTAATAGCAGGTTCAGAGATTAATTGCAGAGTCACCCCATTTATTGCTTGGAG ATAACTCAATGCTTAACAAGCCACAACTGAAAACATCATCTTCAACCAAGAAATTACCATCACCATCCACAGTTATTAAA CTCGAAAGCAAGTCTGAGAGAACCTCTACTCCTGAGCCTGCTAAAAACAATGCAATTGGGATGTTTCCACTTCCTTCTCC AATCAACAACATCATGAGCAAAAGCCACAGTAACCAGTTATCAAATTATAGCCATCATTTAGATATAAACTCCCCAAGCT GTGTCTACCCTCCAGTTCCACCAGTAAACCAGTGGTTAGTTCCTGTCATGTCCCCATCTGAAGGCCTTGTGTACAAGGCA ATCATTGCTCCAAATGCAGGCTTCATGGCACCGCCACCAACACCACCACCACCACCAATCATTGCTTCATCTTTACCCCA GTTCTTACCACCACCATCATTAATGCATCATCCTTCTATGTCTGTTGAGAAAATGGGGCAGTCTAATGGTCCTGATCAGA ACCACCACTCCTCTGGAGAGGTCAATTCTGCCATGTTATACCGGAGCTCATCTAACCTGTCCACGCAGACTAGCCGAGTG ATGTCGAGAAATATTTTAACTCATCATTCAGTGGAAGATAAAGAATTGCAGAGAAGTACAGCTAGTAGTCCTCCTTCCAA GAAGATGAAAGGAGATGAACTTCCTTTGTTTCCTGTGGAACCGACATCTCGGCTATCAGCAGAACAGAACACACCTGTTG AAAACCTCCCGCGAGTGATCAAAGCTCTTCCTCATAATCCCAAATCAGCTACTGAATCAGCAGCCAGAATATTCAGGTCA CTACAAGAAGAAAGGAAATATTTGTAACTAGTCTATCTCAATGTGTTAGTCAAGTCTAGATATTCTAATTTGATAAGTAA CAATACACACTAACGCTGTACCAATGACCATTTTCTTGGATAAATATGTTGAGAACTCTCACACACACATTGCTTACATT GCTTAGAAATATGGCAAAATAAATCATTATACGCGGTAGATCAATCCTACTTCTAAGTTAATTTTTGAATTAAAGTTCCC TCTAACTTAAATTCTAAGAAAATATAGAGGTTACAAAGTTTCATGAAGAAACTACAATATATATTAATGGGGTGATAATA ATTTGTTAAAACTATATATGGTTATAGTCAAGTTTTTTAAGCATTTAGTCAAGAGTTTGACCCATAGGCGATGTGTATAG AGAAATATTTG
CDS sequence (LotjaGi3g1v0429200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGGGCAATTGGTGAGGGGAAGGAGATGATTAGCCCAATGTTTCCTAGGTTGCATGTTAAAGATGCAGAGAAAGG AGGGCCAAAAGCACCTCCAAGGAATAAGATGGCTCTCTATGAACAATTCAGCATCCCTTCTTCTCAAGGTCAATTTGCAT CATCAGAATCAGGATCACCATCCTTGTTTCCTCTCCTGCTAAGAAACTGCACACTTCCTCCAACATCTACCCAACAGGGT AGTTTCCTCACTAGTAAGAATTCCCTGAAAACACTTGGTGAGGATGCTTTTATGACTTCTGGTTCTGCCTGTGAGAGAAA TTCAAGCTGCGGCATCATTCAAAATGATAAAGATGATGATAAACTCGCAAGAAATAATTTGAACTGTTCGCTCAAAAGTC TACACTCATTTAGAAACAAGGTGAATTCATCTGAAGCCATAGATCTGAATTCAGCAAAATATGGGAAGAACCAGATGGAA GAGCCTATAGTTGTGAGACAAATTGGTCTGAAGCCAGAGGAAGGGCCTCCTCACCCATTAGATGGTTTTGGTGATATGAG AGATGATGAATCCTTAAACTCATTGGTGAAAGGAAGGAGTTCTACGTCAATGAAGAGAGAACATGGATCATTGAAAGGAG AAATTAGAAGTATTTCAGTAGATAGCTTAAAAACATTGCAAGGTAGGAATGTTCATACACATGAAGAGCATGCAGCTTTT GAGGACAATAAAGATGAGGAGGCTTATAGGGATCATGATACCTTAAATAAACCAAGTTCAGAATGTTTGTTTGGGAGGGA TATTTCCCCTGACAGTGTTGTAGGAGTTATAGGTGAAAAGGAATTTTGGAAAGCAAGAAGAACTATCATCAATCAACAGA GAATCTTCCTCATGCAAGTGTTTGAGCTCCACAGACTGATAAAGGTTCAGAGATTAATTGCAGAGTCACCCCATTTATTG CTTGGAGATAACTCAATGCTTAACAAGCCACAACTGAAAACATCATCTTCAACCAAGAAATTACCATCACCATCCACAGT TATTAAACTCGAAAGCAAGTCTGAGAGAACCTCTACTCCTGAGCCTGCTAAAAACAATGCAATTGGGATGTTTCCACTTC CTTCTCCAATCAACAACATCATGAGCAAAAGCCACAGTAACCAGTTATCAAATTATAGCCATCATTTAGATATAAACTCC CCAAGCTGTGTCTACCCTCCAGTTCCACCAGTAAACCAGTGGTTAGTTCCTGTCATGTCCCCATCTGAAGGCCTTGTGTA CAAGGCAATCATTGCTCCAAATGCAGGCTTCATGGCACCGCCACCAACACCACCACCACCACCAATCATTGCTTCATCTT TACCCCAGTTCTTACCACCACCATCATTAATGCATCATCCTTCTATGTCTGTTGAGAAAATGGGGCAGTCTAATGGTCCT GATCAGAACCACCACTCCTCTGGAGAGGTCAATTCTGCCATGTTATACCGGAGCTCATCTAACCTGTCCACGCAGACTAG CCGAGTGATGTCGAGAAATATTTTAACTCATCATTCAGTGGAAGATAAAGAATTGCAGAGAAGTACAGCTAGTAGTCCTC CTTCCAAGAAGATGAAAGGAGATGAACTTCCTTTGTTTCCTGTGGAACCGACATCTCGGCTATCAGCAGAACAGAACACA CCTGTTGAAAACCTCCCGCGAGTGATCAAAGCTCTTCCTCATAATCCCAAATCAGCTACTGAATCAGCAGCCAGAATATT CAGGTCACTACAAGAAGAAAGGAAATATTTGTAA
Protein sequence (LotjaGi3g1v0429200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGAIGEGKEMISPMFPRLHVKDAEKGGPKAPPRNKMALYEQFSIPSSQGQFASSESGSPSLFPLLLRNCTLPPTSTQQG SFLTSKNSLKTLGEDAFMTSGSACERNSSCGIIQNDKDDDKLARNNLNCSLKSLHSFRNKVNSSEAIDLNSAKYGKNQME EPIVVRQIGLKPEEGPPHPLDGFGDMRDDESLNSLVKGRSSTSMKREHGSLKGEIRSISVDSLKTLQGRNVHTHEEHAAF EDNKDEEAYRDHDTLNKPSSECLFGRDISPDSVVGVIGEKEFWKARRTIINQQRIFLMQVFELHRLIKVQRLIAESPHLL LGDNSMLNKPQLKTSSSTKKLPSPSTVIKLESKSERTSTPEPAKNNAIGMFPLPSPINNIMSKSHSNQLSNYSHHLDINS PSCVYPPVPPVNQWLVPVMSPSEGLVYKAIIAPNAGFMAPPPTPPPPPIIASSLPQFLPPPSLMHHPSMSVEKMGQSNGP DQNHHSSGEVNSAMLYRSSSNLSTQTSRVMSRNILTHHSVEDKELQRSTASSPPSKKMKGDELPLFPVEPTSRLSAEQNT PVENLPRVIKALPHNPKSATESAARIFRSLQEERKYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 80 | 80 | 1.2E-154 | – | |
MobiDBLite | 1 | 36 | 36 | - | – | |
PANTHER | 1 | 80 | 80 | 1.2E-154 | ||
PANTHER | 84 | 595 | 512 | 1.2E-154 | – | |
PANTHER | 84 | 595 | 512 | 1.2E-154 | ||
MobiDBLite | 324 | 368 | 45 | - | – | |
MobiDBLite | 327 | 364 | 38 | - | – | |
MobiDBLite | 457 | 488 | 32 | - | – | |
MobiDBLite | 471 | 488 | 18 | - | – | |
MobiDBLite | 517 | 543 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Regulation of photoperiodism, flowering | Any process that modulates the frequency, rate or extent of photoperiodism, flowering. |
Expression pattern of LotjaGi3g1v0429200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…