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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0429400 |
| Transcript ID | LotjaGi3g1v0429400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87; TrEMBL-Plants: tr|C0JP16|C0JP16_LOTJA Putative basic helix-loop-helix protein BHLH11; Found in the gene: LotjaGi3g1v0429400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84068689..84070987) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCTCCAAAACAAACAAACACACACACACGGCATCATTAGCACCGGTCTTGATTGACAGCTGAAGGTACAAACTAATT GTCTCACTTCATCAGTTTGTTACATATATACATGTATCAGTATCAGTTCTTGTATCTTTGAATCCTTCTCTTAACTTGTA CAGTTCACAATAATTCAGTTGCCCAATTTGACATGGTTTGGTTGTTTTCTTTCACCTTATCATCACAGTTTTCACCATAC TGAATTGGAAGAAGACAGTTAGTGACAGATTGAGTAAAAAAAACCTTGATATTAAAAGCTGTTCTGGTTCCTCTGTTTTA TTGCTGACATTCAAGGATTCTCATCTTGTTGGTTCCTCTTGGCTTTGGTGTTCTGGTTCTGGCAACAGCTGGATCTACTA GTAGAATTAACTGGTAAGCCTCTATGTCATCAAAATTTTATTTTTCTATTCGGGTCGATTTATTTTAGAGTTTTGATTTA TTCACACTCACTTTATTTTCCATCTCATTTCCACTCACATTTTCTCTAGACTTAGATGTGGATGGAATTCAGGTGTGGAT GAAGTATTATTGTTTATTTTATCTGACATATTTATGTTCAACAATACAGGTAACAAGATCACTCTCTCCTCCAAGTTTCA ACATTTCATCAGAAATTGCAAATCTTCAATGGAAGGTCTGAATTGGGATCCAACTCCTTCACATCTTGCAGCAAACACAC CAATCTTATGGAGTTCTCAGCAGCAGCAACAAGAGTTTGAAGGAGGCTACCCCATATCCAGCTTAACTTCAAGTGTTCTA AATCAAATACAAGATATGCAGAAACCTCCTCAAACATTTCATGCAAATTCCAATCCTGAAAGATTGATTTATCAGTCATC AGTTGCTTCTTCCACCAGTTCAGATCAGATAATGGATGTGATTCATCACATTCACAACACAAACATATCACATCATGCAG CAACAACCATGTCAGTGAAATCAGGACCTTTAACATCCCAATCCCACCCATTTTTTAGCAACTACAACATCACAGATTTC AACATGGTCCACCAACAACGACTTATCAATGGCTCACAACAAAACTCTCTTGATTGCTTACTTTCAGCTACTAACAGCAA CACAGATACTTCTGTGGAAGATGATGGGATCTCAATGATTTTACCTGACTGTGGAAACTTATGGAACTTCAGTCATGGCA GTGCAGCAGCTTCCTCTGGTGAATCTGAGACTAATGCTTCTAATGGTACTAAAAACAAACACATGGAGTTCCAAGTCAAT GAACCTGTCCAAACAGTGTCTCAAAGCTCCTCTGATCAATTGAAGCCAAAGAGGAGAAATAATCAATCCTCTGATGACCA ATACTTCACTATGCTTGAGAATTCTCCAATTGAAGGTGGTTTCAGATTAATCTCAGAAAATCCACCAAAGTGCAAGAAAC CAAGATGGGAAAAGGGTTCCTGCAGTTCATCTAACATCAATTTCCAGCAACCAAACTCTTCTTCTTCCATTGAAGAGCCT GATCCAGAGGCAATTGCACAAATGAAGGAAATGATATATAGGGCGGCAGCTTTTAGGCCTGTGAGCTTGTTGGGGTTGGA GGAGGTGGCTGAAAAGCCTAAGAGGAAGAATGTGAAGATATCAAGTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGGG AGAGAATAAGTGATAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGGAGCAAGATGGACACTGCATCAATGCTTGAT GAGGCTGCAAATTACCTCAAGTTTCTCAGGTCACAGGTCAAGGCACTGGAAAGTTTAGGGAACAAAGTTAGTACTGCAAT GGATTATTGTTCTCCTTCTAGCATTGCCTTCTCTTTCAATCCTTCTTTTCCCATGCAAATGAAGGATGATTACCAGTTAC CATCATCACATCCACCATTCCCAGGGTTGAAGTGATCTATTACCAATTAACATGGGGGTATGGTATGAATAATAGAATGT ATAATAGGGTATGAAAACCCATGACCTCTAATCATTTCATTTCATTGCAACCGACAATGATTAACATATCTGATATTCAT TTTTTAGCCAAAGCTGCTTGAAAAACCTAGCAGTTGACATGTATCATTTTATTGTAATTGTCTTCAGTATAATCTGCATT CATCAGTGACTTGTTTAAAAGTTTTATTAATGATGGCATTTTCTGGTTTCAAGCATATTTATTAATCATGGTGCACCACC ATGCATGAGCAAATAGTTTTTCTCTTTAATTTTGAATTAGTACTTACTATTATTTATGT
CDS sequence (LotjaGi3g1v0429400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTCTGAATTGGGATCCAACTCCTTCACATCTTGCAGCAAACACACCAATCTTATGGAGTTCTCAGCAGCAGCA ACAAGAGTTTGAAGGAGGCTACCCCATATCCAGCTTAACTTCAAGTGTTCTAAATCAAATACAAGATATGCAGAAACCTC CTCAAACATTTCATGCAAATTCCAATCCTGAAAGATTGATTTATCAGTCATCAGTTGCTTCTTCCACCAGTTCAGATCAG ATAATGGATGTGATTCATCACATTCACAACACAAACATATCACATCATGCAGCAACAACCATGTCAGTGAAATCAGGACC TTTAACATCCCAATCCCACCCATTTTTTAGCAACTACAACATCACAGATTTCAACATGGTCCACCAACAACGACTTATCA ATGGCTCACAACAAAACTCTCTTGATTGCTTACTTTCAGCTACTAACAGCAACACAGATACTTCTGTGGAAGATGATGGG ATCTCAATGATTTTACCTGACTGTGGAAACTTATGGAACTTCAGTCATGGCAGTGCAGCAGCTTCCTCTGGTGAATCTGA GACTAATGCTTCTAATGGTACTAAAAACAAACACATGGAGTTCCAAGTCAATGAACCTGTCCAAACAGTGTCTCAAAGCT CCTCTGATCAATTGAAGCCAAAGAGGAGAAATAATCAATCCTCTGATGACCAATACTTCACTATGCTTGAGAATTCTCCA ATTGAAGGTGGTTTCAGATTAATCTCAGAAAATCCACCAAAGTGCAAGAAACCAAGATGGGAAAAGGGTTCCTGCAGTTC ATCTAACATCAATTTCCAGCAACCAAACTCTTCTTCTTCCATTGAAGAGCCTGATCCAGAGGCAATTGCACAAATGAAGG AAATGATATATAGGGCGGCAGCTTTTAGGCCTGTGAGCTTGTTGGGGTTGGAGGAGGTGGCTGAAAAGCCTAAGAGGAAG AATGTGAAGATATCAAGTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGGGAGAGAATAAGTGATAGGATTAGGGTTTT GCAGAAGATTGTGCCTGGTGGGAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCAAATTACCTCAAGTTTCTCA GGTCACAGGTCAAGGCACTGGAAAGTTTAGGGAACAAAGTTAGTACTGCAATGGATTATTGTTCTCCTTCTAGCATTGCC TTCTCTTTCAATCCTTCTTTTCCCATGCAAATGAAGGATGATTACCAGTTACCATCATCACATCCACCATTCCCAGGGTT GAAGTGA
Protein sequence (LotjaGi3g1v0429400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGLNWDPTPSHLAANTPILWSSQQQQQEFEGGYPISSLTSSVLNQIQDMQKPPQTFHANSNPERLIYQSSVASSTSSDQ IMDVIHHIHNTNISHHAATTMSVKSGPLTSQSHPFFSNYNITDFNMVHQQRLINGSQQNSLDCLLSATNSNTDTSVEDDG ISMILPDCGNLWNFSHGSAAASSGESETNASNGTKNKHMEFQVNEPVQTVSQSSSDQLKPKRRNNQSSDDQYFTMLENSP IEGGFRLISENPPKCKKPRWEKGSCSSSNINFQQPNSSSSIEEPDPEAIAQMKEMIYRAAAFRPVSLLGLEEVAEKPKRK NVKISSDPQTVAARQRRERISDRIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVSTAMDYCSPSSIA FSFNPSFPMQMKDDYQLPSSHPPFPGLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 99 | 412 | 314 | 1.2E-120 | – | |
| PANTHER | 99 | 412 | 314 | 1.2E-120 | – | |
| MobiDBLite | 200 | 232 | 33 | - | – | |
| MobiDBLite | 244 | 283 | 40 | - | – | |
| MobiDBLite | 262 | 283 | 22 | - | – | |
| ProSiteProfiles | 324 | 373 | 50 | 14.888 | ||
| Gene3D | 327 | 384 | 58 | 1.3E-10 | ||
| CDD | 330 | 378 | 49 | 1.76109E-11 | ||
| SUPERFAMILY | 330 | 389 | 60 | 1.05E-13 | ||
| SMART | 330 | 379 | 50 | 1.8E-12 | ||
| Pfam | 334 | 373 | 40 | 3.2E-6 | ||
| Coils | 363 | 383 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0429400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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