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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0430800 |
| Transcript ID | LotjaGi3g1v0430800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA biogenesis RRP36-like protein; TAIR: AT1G12650.1 rRNA biogenesis RRP36-like protein; Swiss-Prot: sp|A7SL20|RRP36_NEMVE Ribosomal RNA processing protein 36 homolog; TrEMBL-Plants: tr|I1JKJ5|I1JKJ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0430800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84230606..84235162) extracted from Lotus japonicus Gifu genome v1.2.
ACACAGTCTTACAAGTAGCAACCCAACCAAACCCGTTTTCCAACCTCTTCACCTTTGATCCGCTGCGCAGTCACCTCCGC CGTGCCGCACGTCGTCGCCGGAGTCCTCTGTTGTGGTTCTCTTCTTCTGTATCTACCTTTTCCATCGATACGCTACCCAG TGTTCGCTTCTTCTTCTGGTTTCTCGCAAAGACATGGCTCAGGTACTTCATCATCCATTTTCCCTTCTCTTCTCTATACA AACGATTAATGCGTCTCTAACCGATTTGATTTTTTTTCTCGAATTGAAGAAACACAGAAGCAAAATCCCAGTCTCCGAAC CCCAACACGAGGAAACTGAAACAGACGAATCTGCTTCTTCTATTTCATCAGAGGATGTGAGTGATTAAAAAAAATTCATG AAAATTAGATTGATTTTGATTCAAGTTCATGGTAAGTGTGAAGTGTCATTGATTTTGACTTTGATGATTGTAGGAGGAAG AGGATGAGATTGAGAAGGAGCTAGCTGATGTTACATTTGAGGAGTTGCAGAAAGCACGCTCAAATGGGGCACATGCATTT TTCCAGAAACCCAAAAAGGACCAAAGTTTGAAAAGGGCTAACAAGAATAGGTAATTGTATTTTAAACTGAGTTTACTGCT TAACATAGTGTGTTTTTAATGTCCATAAATCACATTCAAATAAATTATTTATAATTATAATGTCTGTGTAGGCCAATGGA GGTTAGTTGCAAGAAGCCTGTTCCTGTTTTTAGAGAGGTCATCCAAGCTCCTAAGAAGGTGGGTGGTGTAGTTGTTATTT GTATATAGAGTGTAACGTTCTCTGCTTCTATTTTATGTTATTTCTGTTTATCAACATGTGACATATTGAATAGTTTAGCA CACTTCCTCATACACTATTAAAACTTTGGATTCATTATCATGTGCAAATTTAGGATATTAGCTGGTATAAGCATATCCAA ATAAATAAATAAAAGCTGGTATAAGCATATTACAGCAATGCCTTCTCCTGCGTAGATACTTTGAAAATTTCAAAGTTTAG GGTTGGTGCTGTACTATACAGTTATCTGGATATGTTTTGCAGGAATCATGTATACCTTTGATAATTTTCAGGTTATACGT GATCCACGATTTGAATCCCTTTGTGGTAATCTTGACACTGACGGGTACGTTCACCTCTAGACATCTGTTATTTATTCTAC TTTTTTTAGTCGTGTACATTTATGTTATGGAATGCATAGTTTTAGTTGCAATCGTTTTATGAAAAAGTAGTAATTTCATA CTGTTCTAAAGCTATGTCGATTCTGTTGCCATTTTATAGCATGTCTAGCCAAGTGCCATTCCTTTACTATTATCATTTTA ATTGAAAGCTAGTTTTACTTTTCCTCACGCTCACATGAAGGAGTCAACTTAGTAGCATGAGTTAAAGCTGCGGACAGATG AATGCAAATTTCACATGAAAGTCGCTTAATATGAGAAATTATATTCCCTGTAGTGTAGTTTGAATGCAATTGTCTTTACG TTGCTATTTTATTGTGACCTGTGAGCAAGTTCTTTTAATTAAAACTGGTAGCTTCTCTTGTTTCCTTTCACGGGAGTCGG CAGCACTAGTAATATATACACATGGATTGCAGGTTCAAACAAAGATACAATTTTTTATATGAAGATGTTCTTCCTGCTGA AAAACAGGTAGTCTTCCAGATTGTAATTGTAGAACTTTGTTTGTAGCTTTTCTATGGCTTTCCTCTTATGACATCTTCTG TGCATAACAGGCTCTTAAAAAGGATCTGAAAAAATACAGAGATCCTAAGCGGACAAATGAAATAGAAGAACGTCTATCAT GGGTTGTAAGTACAAGTCTTTAGAAATTTGTCTTACACTTCCAGAAGTGTGACACTTATTAGTTTACTTGATCACATTTA CATATCTTTTCAGGACAAACAATTGAAGTCTGGTTCAGCAAAGAATATTGATGCAGAGATATTGGCTAAGCACAAGAAGA AAGAGAGAGAAGCAGCAAAGCATGGAAAACGTCCTTATTATATCAAGAAATGTAATTCTTCTCTTCCTCCCATTTCCTGA TCCCTTCTCCCTCTCTCTCTCTCTCCATATGTTGCAGATGCAATTTCTGCTTATGTTTATTTTATTGGCTCTGGCATAGG TGGAGGTCCCAGTGAACCCAAATTATAGAATACATATTCAATATGTGGAGCCAATATTTGCATAATTAGAATAACTCTTT TAACCGTTAAGCATCAATCTTCCCATTTCTTGTAGCACACTGGCGGTAATAGAGGCAATATGTTCGATAGTGATGCTGCT AGTAAATCTGTTATAGTTCATGAAACAGCCCTGCTAAGTGTTAACTACTTGATAGTTAATAGGATTAGGCTTTTGAGTGA CACCTGGTAGTAGTCTATACATACTATAATATTTTCCTGATGCCCTGTGCCCATGATCATAGGCATAAACGTGAAGAAAG CATATGTACTTATGGGAAGTTGGGGACAAGATGATTTTTTGGAGGGTGTTACATCTTGAATTCTATAATATTATAGACAT ACTATAATATTTTCCTGATGCCCTGTGCCCATGATCATAGGCATAAACGTGAAAATAAGCATATGTACTTATGGGAAGTT GGGGACAAGATGATTCTTTGGAGGGTGTTACATCTTGAATTCCACTGACATACATGAATTTTAGGATACTAGTTTTTGGA GTTTTCACTTCAGTTTTGATAGATACTCTAGTGAGCTTCTGCTTTATACCTTTTGGCCTATATATCCGACCTGAATTTGA GGAATGTAAGCCAATGGCTCTCTACTTCTGGCGTTGAGTAGTAACTTTTTTAACTTTGCTTGTCTTCTTAAGAAATTTTT CTAAAGGGTATATTTGTAAAAAAGCTAAAAGCTTGGTAAGCTTTAGCTTGAGAGGGAGAGTTAATATGTAAGATATTAAT ACCTTGTAATTAATATCTTGATCATATCTTAGAGTGGTTTAGGAAGTTTAGATTATTCCTTAAGATTAGATTTCTATATT TTGTTAATATGTTTCCTTATTTAATTAGGATTAGTATTCCATTAGTAATATAAGGATGAATGTTGTTGTCTTTTGTAATA ACACCTGATATCATACCAATACAATTTTATTATTCTCAACATTCTTTTTCTTCTCTCAATACCTTAAAAGACTAAAACCT TATAATTTCAGCACTTCTTACTGCACTCCAACAGAACTTTACTGCTTTTCACCTTTAAGGTTAAGGTGAAAGGTTTTGGT GTGAGTATTGGTGGTAGGCACAGGCACATACTGATAAGTGTCTACATAGGAAGAATAGGGGAGTTGCCTGGGATCGCTTG TCAACTGTGTAGTGTGTGAACCAAAGAACAACTTGATCTGTTAGTTTAACTGTTTTATAGGGCGAGGAGTGGGAAGGGAA AAAATCATGGGGAGAGGAGGGTCTCTCCAATACCGTGTAGTATTCTATATTTTCTCCTACATCTGAATCTCCTCATCAAA GGAAGTTCTGCTTAATAATACATCGCACATGCTTTTTTTTCTGTGTACTGATTGGGGTGTACCATATATTCAATCATTTA TAGGGCAAAATTCTAGGGATGTCACACAAACACAGTTCACTGTTGTGTAACACATCAGATTAGAGTCACATCTATTAGTA TCATATCATTTGAAAACAATCTAGTTCATTGCTGCCTCCAAATACTGGCAACGCTATGAATCTGAGGGCTAAGCAGTACC AAACTAAATGATTTGAAAATCATTAAAAAATACATACAAATAAAATGCAACATCAACTATTGATGATGACCTTCTTTTTT GTTCCTTTCAGCTGATATCCGGAAGCAAAAGCTTATTGAAAAATATAATGAGCTCAAGGTATACATCCTATAACCTCTGT TCCCTTCCCCCTGGTCCCCATTATGTCATTTATCGAATGCCTTTTTAAATAATTCATTTTACTCACCATTTTCAGGCATC TGGCAAACTTGAAGCATTTCTTGAGAAAAGGAGGAGGAGAAATGCTGCAAAGGACCATAGATATATCCCATATCGCAGAC CTGGTGACAATGTGGAGTAAGGTGTCAGCTTTAAGGTTCTTTTGTAGGCTGGTTATTCTGGAATATAGCATCAAAGAGAT TCCCGGTATATAGATTTTGTCTTCCATCTGTGGGTTTTACTGAATAATAATCCTTGTTGAATACCCAAAAAGATGTTGTA TTTGTTGAGTGAGTGTACTGTTGTTACTCTGCAAGATTCATCACTAAGATAGGAAACCTATGCTTGGGATCAAGGTGGAA AACTGAGCTTGGAGAGATGCCACTAGCTACAAAGCAAACTACTGATTTTCTGTCATGTTGTGCAGACAAGGTTTTTGCTA TTATCGTAGGTCTCTTGTTTTAGTGAATGGTGATTCTGGTTGACTATTTTATGAATATGCTCGTCTTTATTCAAGCAATA TGAACATTATATTTTAGAGCCAGTTTTTCTATTTTAAAAAACCATCCCCCTTTAAACCTAGCAATTATTTTAGTAGA
CDS sequence (LotjaGi3g1v0430800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCAGAAACACAGAAGCAAAATCCCAGTCTCCGAACCCCAACACGAGGAAACTGAAACAGACGAATCTGCTTCTTC TATTTCATCAGAGGATGAGGAAGAGGATGAGATTGAGAAGGAGCTAGCTGATGTTACATTTGAGGAGTTGCAGAAAGCAC GCTCAAATGGGGCACATGCATTTTTCCAGAAACCCAAAAAGGACCAAAGTTTGAAAAGGGCTAACAAGAATAGGCCAATG GAGGTTAGTTGCAAGAAGCCTGTTCCTGTTTTTAGAGAGGTCATCCAAGCTCCTAAGAAGGTTATACGTGATCCACGATT TGAATCCCTTTGTGGTAATCTTGACACTGACGGGTTCAAACAAAGATACAATTTTTTATATGAAGATGTTCTTCCTGCTG AAAAACAGGCTCTTAAAAAGGATCTGAAAAAATACAGAGATCCTAAGCGGACAAATGAAATAGAAGAACGTCTATCATGG GTTGACAAACAATTGAAGTCTGGTTCAGCAAAGAATATTGATGCAGAGATATTGGCTAAGCACAAGAAGAAAGAGAGAGA AGCAGCAAAGCATGGAAAACGTCCTTATTATATCAAGAAATCTGATATCCGGAAGCAAAAGCTTATTGAAAAATATAATG AGCTCAAGGCATCTGGCAAACTTGAAGCATTTCTTGAGAAAAGGAGGAGGAGAAATGCTGCAAAGGACCATAGATATATC CCATATCGCAGACCTGGTGACAATGTGGAGTAA
Protein sequence (LotjaGi3g1v0430800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQKHRSKIPVSEPQHEETETDESASSISSEDEEEDEIEKELADVTFEELQKARSNGAHAFFQKPKKDQSLKRANKNRPM EVSCKKPVPVFREVIQAPKKVIRDPRFESLCGNLDTDGFKQRYNFLYEDVLPAEKQALKKDLKKYRDPKRTNEIEERLSW VDKQLKSGSAKNIDAEILAKHKKKEREAAKHGKRPYYIKKSDIRKQKLIEKYNELKASGKLEAFLEKRRRRNAAKDHRYI PYRRPGDNVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | - | – | |
| MobiDBLite | 9 | 23 | 15 | - | – | |
| MobiDBLite | 24 | 43 | 20 | - | – | |
| PANTHER | 30 | 248 | 219 | 9.0E-85 | ||
| MobiDBLite | 56 | 83 | 28 | - | – | |
| MobiDBLite | 65 | 80 | 16 | - | – | |
| Pfam | 73 | 238 | 166 | 2.3E-46 | ||
| Coils | 198 | 218 | 21 | - | – | |
| MobiDBLite | 229 | 250 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cleavage involved in rRNA processing | Any phosphodiester bond hydrolysis involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule. |
Expression pattern of LotjaGi3g1v0430800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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