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LotjaGi3g1v0431200.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0431200
Transcript ID	LotjaGi3g1v0431200.1
Related isoforms 1	LotjaGi3g1v0431200.2
Lotus japonicus genome version	Gifu v1.2
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; TAIR: AT5G18800.1 Cox19-like CHCH family protein; Swiss-Prot: sp\|Q8LGE7\|NDA8B_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B; TrEMBL-Plants: tr\|I3SL61\|I3SL61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0431200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:84291196..84294692) extracted from Lotus japonicus Gifu genome v1.2.

CTAGAATGCCCTTGAGGCAATTTGGGGAAATTTCACCACTACTGATCTCACTCACAAACACAAACACAAACACAAACACT GCCCTAATCTCCATTTCTCTTCCTCCAAACACACAGATCCGATAACACTGCAATTCAAGGTAAAGGGTACTCCATTTTCC AATTCATCATTCAATTTCAATGCTCATTCCCCTAAAGTTTCAATTTTCCGAGAAATTTTCTTTCATTTTCTGGGGAATCT ATCAGTGTGACCGATCAAGCTGGTGTTCTTTGTTTCAGCTGAAAGTGTGAATTGGGCATGGCGAGCGCTGTGGATGCTGC AGGAAACCCGATCCCAACATCGGCGGTGTTGATGGCATCGTCGAAGCACATTGGGATAAGGTGCCATTCGGAGAATTTGG AGTTTCTCAAATGCAAGAAGAAGGATCAAAACCCTGAAAAGTGTCTCGATAAAGGCCGCGACGTTACTCGCTGTGTCCTT GGCCTGTGAGTTTTTCCTTTTCCCCCTCAAAATGTTAGCTTTTGCTAGTTTTTCTTGTGTCTGATGAAATGCTTTGTAGA AGGGTGGTTGAAATTATTTTTCAAATTTTATTTTTTTGATGATTTTCAAATGGTGAATGATTCACCAATTCCAATATCTT TACAAAATAGAGGTAGCTAGAGTAGCAAAGAAAGCATTTCTGAAATTGAGAACCTGTGTTTTTTGCCTTATTTGTAGTTG GTTGTGTATCTGTCAATGTGTAATATTTGATAAGGTGGTGTTATATTACAAAGATACTTGCATACTGATTTACTGTTTAT TATCAGCTCAAGGCCTGCTGGTGAAGGTGTTTCATTTATTTACTAGAAAGAAATTGAGTGTGTGAGCCAAGTAGCATTGG TCAAATTATAGTCATGGTTCTGTTTTTGTTTTTGTCTCCTTTCATGGGTTTATTGGCTTGAAATTTTATCACTTTTCATG AAGATCACAAGTCATGGAATGGCTTTATGAACCCTCATTGTTTGTATTCATCAGCACATCATCTACTTTTGTTCTTCTAT ATTTTGGACTATTTATTGAAATTTCTGTTTTGTGCGTAGAACCTTAAAGAAAGGCATTCAATTATCATACTATTCTTTCA AAAATATTAAATAGGCAGAACATTTACCCTTGAGTCTAGCTAAATAGTTTCAAAGTACTGTCTTTTTTTAATCTCACTGC ATGTCATTACCCTAATTGTTGTATTTTTTTTAAATACAAATTAGATACTAAGATCATGGTGAGGGAAGTTGGGCACTGTT GCGCTTCTAAAGTCTAAATTGATATACTAAGACCATTGCGTATATCATTTTTTTCCCTCTCAGAGGCATTGTTGTTTATG GTCCTTAAGCGTCTATATTTAACCTGAGATTTAATATGTTGGCAAGTCGCAACAATGTGTTTTGTCAGTTGTCAGTGTAT AGATATAATTTTTCTGCTCACGTTGAAGTTTGGTTTCTAATTCTAACCAAGCTGCTTCGAAGGTCACTGTGTTTATACAA CTAAAAGTGATTGAGTACTATAGTATGTTTTGTATTAATAGCATCTGAATACTTTCTGTTTTGAAAATTGAAGCATAAAA TATAGTGTTGTCTACCTCGCTAGTTTCTTTAACTTAGGGAACTGAGGGGTGGATGAGTAAAGATTTGACTTCTCATCCTC TGTAGTTCCTATTAATCTTGTTTCTAGGACGGGTTTAACAAGGAGTATGTGAATGTTTCACTGGAAAAAAAGCGCATAAA CTGAGATCTTATATACTTTCATATATCCTTTCCCTTTAGCCATGAAAATATGTTATATACCCTTTCTTTTTTCCTTCTAA TTTTTTACTTGATAAATGGATGTATTGAATGGTGATAATTTAGTAGATATTAGAATTACTGAATGAGAAACAAATAGAAT CTGGCTCTTTGCTTCTAGATGCTACATTAATATTAGAACTTAGAAGTTGTCTTGTATATTTGAACTGTCTCATTAGTTTT TACAGAAAAATTCTCTTGTGAGGTTGTTTTCATATCTAATTATCATGTAGGTTGGAGTACATCATCTCTGTTTATTGCTG ATTTTATCCTTTATTGCTAAATCCATGGACCGTACAGTTATTTTCATAAGTCATAACCAACGCCTTTCGTAATTTGTTAT TAGAATCAGTATCACATCATCTCTTAACTTGGATGACCATATATTTGATGTATCCTATTATTATTGATCACTGCCTCCTG CCTGCAGTAGGCATTGCTCTAATTTTTCAGATATTAAAGGTTGCAACAAACACATTGTCACATTGTATTGTAAGACTCTT TGGCCTTTGAGCGGAAGCATTATTTTTGTTTTTGGTGGAGAGGAAGGAAATATTTATGGTCATTATAACTGTTCGATGCA TTGTTTGTCACAAATAGTTTAATTTCTCCGTATCTGCACTTGTGTTATGTGCACAATGATACAGACAGGTTTTTATGATT CATGTCTATCTGATTAAAGGTTTTTCTTTTCTTTTTCTTTTCAGATACCCATGCTTCTTATGATTTATTTGATATGCTAT GACTGAGTTTACAGTCAGATGACTCCTGTGTATTTATAGCTTTCTATTGTAGTTTAAAGCATTCTCTGTTACACACAAAG GATCTTCTAAAAAAAAATCTTAATGATAGTGACTAAATGCTTGTTCTGCAGTCTGAAGGATCTACACCAAAAGTGCACGA AAGAGATGGATGATTACGTTGGCTGCATGTACTACCATACAAATGAATTTGATTTGTGTCGTAAAGAGCAGGAAGCATTT GAGAAAAAGTGTTCTTTGGAATGAAATGATGTACTGCTGTTATCGAAAATAATACCTCAGGCGATTTGGATTGAGCCAAT GCACCTGTTTCACAAATATTCATGTAATCTGTTTTTATGGATCTTTATCATCAACTATGTTGTTCATCTGAACTTTTTCT AGAGCAATGCATCCAAGCAGGACAAAACAATCCTCTTCAAACATAATAACTGATGAGAGATTTTGAAGTTGGAACATGCT TGTAATTTGATTTTTTGTGTTGAAAATACATACTTCTTGTGCTTTATAGATAAATTTAGGATTACTTGCCAAACTTCACC AATTTCTGGTGCCTTCTGTGTAGTGGCTCCTTCCATGTTCCAGCTATACTTTGAGGTCCGACCAAACTTGAACACAGGAG ACTGCTAGCTTCCCCAAGATCAGTTATGTGCTGTTGGTAAATAGATGCATCATTATTATAGAAGTTCACACTTCTGAGTT CATCTCATATATCAGATTTTATCCAAGTGTTTTTTTACTTTGTTTTGATAGATTGAAACTTATTGGCTAATTAAGTGAAG ACATTTCATTTGAGTGCCTTGTAAAAAATCAATCAATGAACAAACTAGAACAAACCTAAAGAACTTTAATAGGGTGTTCA TTGATTGTTTTGATTTAGGTTTGAGGTAAAAAATTACTTTAAATCAAAGTGAAAGGA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0431200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAGCGCTGTGGATGCTGCAGGAAACCCGATCCCAACATCGGCGGTGTTGATGGCATCGTCGAAGCACATTGGGAT AAGGTGCCATTCGGAGAATTTGGAGTTTCTCAAATGCAAGAAGAAGGATCAAAACCCTGAAAAGTGTCTCGATAAAGGCC GCGACGTTACTCGCTGTGTCCTTGGCCTTCTGAAGGATCTACACCAAAAGTGCACGAAAGAGATGGATGATTACGTTGGC TGCATGTACTACCATACAAATGAATTTGATTTGTGTCGTAAAGAGCAGGAAGCATTTGAGAAAAAGTGTTCTTTGGAATG A

Download CDS Sequence

Protein sequence (LotjaGi3g1v0431200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASAVDAAGNPIPTSAVLMASSKHIGIRCHSENLEFLKCKKKDQNPEKCLDKGRDVTRCVLGLLKDLHQKCTKEMDDYVG CMYYHTNEFDLCRKEQEAFEKKCSLE

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13344 View details on PTHR13344 Search for proteins/transripts with this domain View external data on PTHR13344	3	105	103	8.9E-48	IPR016680 Show description in modal box View details on IPR016680 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51808 View details on PS51808 Search for proteins/transripts with this domain View external data on PS51808	26	67	42	12.492	–
ProSiteProfiles	PS51808 View details on PS51808 Search for proteins/transripts with this domain View external data on PS51808	68	106	39	14.42	–
Pfam	PF06747 View details on PF06747 Search for proteins/transripts with this domain View external data on PF06747	71	103	33	1.0E-8	IPR010625 Show description in modal box View details on IPR010625 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006120 View details of GO:0006120 AmiGO InterPro QuickGO	Biological process	Mitochondrial electron transport, NADH to ubiquinone	The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I.	Subterm of View details of GO:0022904 Part of View details of GO:0042775

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0431200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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