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LotjaGi3g1v0433000.1

Overview

Field Value
Gene ID LotjaGi3g1v0433000
Transcript ID LotjaGi3g1v0433000.1
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit beta type; TAIR: AT3G60820.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp|O82531|PSB1_PETHY Proteasome subunit beta type-1; TrEMBL-Plants: tr|I3SL66|I3SL66_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi3g1v0433000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:84466700..84470200) extracted from Lotus japonicus Gifu genome v1.2.

TTTTTTTTCTTGTTCAATAAGAAGGTGATGATGAAGAGTTGTCTTACAAAAGGGAGAGAAGCCAACGACGTCGTTTGCTG AGTTTCGTGTTTGCAAAGAGATCCGAAGTGAAAAGAGTGAAAAACCCAAACCTTGTTCCTATTTCACGCCCTAATTCTTC ATCTTCTTCGTTAGGTTTCACTCACTCCCATCAACAATGACGAAGCAGCACGCAAATTGGTCTCCATACGACAACAATGG AGGGTACTCACTCTCTCTCTCTCTCTCTCTCTCAATCTCTTTTCTCTTTTTCAGTAACACCCAGTTTTTACAGTTTTGAT TTTGATTTGTAGATCTTGTGTTGCAATTGCTGGAGCCGATTACTGTGTCATTGCAGCGGATACCAGAATGTCCACCGGTT ACAACATCCTCACTCGCGAGTACTCCAAAATCTCCCAACTGTATGTTAATTAATTCTTACCCTAATTTCAAGATTTTAAT CTTTTCAAATTTCGCTGTTTTTTGTTGTTGCTTGTGTTTGTTATTTGAGGATGTAAACTGGGTTTTTTGGGTTAAGCTCA ATCAGCTTAAACTCAATGGAAAAATTTAATCTTTGAAAATTTCGCTTGAACTCAATCAGCTTTTGTTACTATTGTGAATT TGAGTGTGATATCGGGGTTTTTTGTTTGGTGACAGAGCTGAGAAGAGTGTGATGGCTTCTTCTGGTTTTCAAGCTGATGT CAAAGCTTTGCAGAAGGTTCTCTCCGCTAGGCATTTGGTGAGTTTATTAACAAACAAATACTATTTAGATTGAAAATTCC GATGACTTAGCATGTTAGCAATTGCATTCTGTTCTGTCTGGAAGCTTCTCTCTATGTTGATTACCATTTACTTAGTAGAT CCTGTGTAGATTTGTGGTTTAGTTTAGAAGAGAACTTTGCTTGGTTTCAGTTTTTTTTACCTCATAACTGATTTAGAAAT TAGAACAATAGAACAACAATCCTAGAGTCGTAGAGTGTTTGGTTCTGCGTTTGCACCATCCAGACCGCTTAAAAGAGCAT GTTTGGAAAGCAGAATCAATTCGATTTGGTTAAAATCAATTCTAATTGGTTGAAATGATGTTTGGGTAAACCAATAAATT GATTTCATGGGTCAAGAATTGGATCTACTTGCCACAACAAATAGTTTTTTCTGTGTTAAACATAACCAGTTCTGAGATTA CATAGGCATGTAGCTGAATCTCATAACATTACCCTAAAAAAACACTTTATTCGTAAAGGTATCCAAACATAAATTGCATC ATTTTAACTCACGTTTACCATACGCAATTTTAGTAGAATCAATTCTGCTAATGGTTATCCAAACACACACTAAGATGTTT GGAAACATGTTCACCAAATTTTTCTCATCTGATTTAGAGTTGAAACTTGGTTATGATAACAGCAATTCTTTCTAGCTTTT TTGCATTTAAGTGGACGAAATACAAACATGAATCACTTTACTTTAAAGTTTAAACTATGTTTTACTAGGCTAATTTTACA AAAATCAACTCTATTCAAAATTATGTTTGGCAGGTGCTCACCAAACACATACTTACCCTCTAGTGTATGTAGAACATGCC TTTGACTTGGGGTTCAAATACTCTGATGAAGAGAAGATCTCAATGTTATGCCAAAATGGTCCTCAATGTTTGCCCTGAGG GTCAATTTATAGCTCCAACAGAACCAAACACTGATATGATAACCCTATTTTAAACTCGACTCAGATAATCCAAACTAGGA CAAAATTCGTCAATAACAAATAATTGAAAATTGAAAATCTTCATTTTAAAATTGAACCATTGTAAGAGTTGAAGTAGTGT CTTGCAACTACTTGTATTCGATCATAAATTGAAATGAAGATGGTAGGGAGTACTTTGACATTTGTTGGTTGTATGGAAGT TTGTTCATTTTGTTGTACTAGGAAAGGGTTCTGCTCCGCACAACTGTTGAAGAAGATAATAAGAAGGATTGGAGAAAACT GAAAAGTTTACCTAGTGTTCAGTAGCTAGTTTTAGTTGTCAGACTTTCCTGTGTCAGATTATCATTTTTGGAAAAATTAC TCTCTGAGATTGCCACATGTGCATTTTAAGAAACTTGATTTAAAAATGTTTTTACTAGAATAGTGTGCTGGATTGATTTT ATAATACTAATTGCAGAATATTATTGCTTCTAGTCGTCTATCTATGTATACATCACCTGATTATTTAAGTAGTTAAGTGT TAGTTATTGTGGAGAAACCGATGTGTTTGGCCTCGTATATTGTTCTGTACCTTCTGTGACTCGCTTGTTTCGAATTTACT CTGACTAAAATTCGAATCCTCTGATAAAAAATGTTATATAATATTAAATATTTTGATTCTGAATGCAGATATATCAACAT CAACACAACAAGCAAATGAGCTGCCCTGCAATGGCTCAGTTGCTTTCAAACACTCTTTATTACAAACGCTTCTTCCCGTA TTACTCTTTCAATGTTTTGGGTGGCCTTGACAGTGAAGGTGCACTATTTCTAGCTTAACTATTCTTGCTCATGTCCTATT TTGCATTTGCTAATTGCTTACCTTCAACCTTAAATAGGAAAGGGTTGTGTCTTCACATATGATGCTGTCGGTTCCTATGA GAGGGTTGGATATAGCTCTCAGGGTTCCGGATCCACACTCATTATGCCATTCCTTGACAACCAACTGAAGTCCCCTAGTC CACTCCTTTTGCCTGCCCAGGTGAAATTCTTAAATTTGTGTTTTGCTTGAAATATTTAGTTCTACAAATTTCATTTGACT GACATGTATGGTGAAAATACAATGTCTTGCAGGATGCTGTTACTCCACTGTCTGAAACCGAAGCAGTTGATCTGGTCAAA ACTGTTTTTGCATCCGCAACCGAGAGAGATATATACACTGTATGTTTGTTTACATGTGTTATTGTCATTTGACTGTAGGA TAACCTTTTAACTTACTATGGCTATGTTTTTACAGGGAGATAAGCTTGAAATTGTCATCCTAAATGCCAGTGGTATTCGT CGTGAATACATGGAACTCAGGAAAGACTGATGCTTTTACACAGATTTATTGTTCATGCCAGACTGGGATGACAATGTTTG AAATGCTCCTTGAATTATAAATGTTGTAGTGGGTTTTACCCATGAGGTGAAATTAAGAATTGCATTTCCAGTGAAATCAG TTTGAACTAGTGCTAGACTCTGTTCTCATCATTACTAGACTGTGGTTTCACTTTATGTTTTTGTATTGGATGTTATCGGT GCCTATTTCTTAGCTTTCTTTCATGTCTTTTGTCTTAAAAAAATGCCTATGAAATTTGGTTCTGTTATCTCTAGCGAAAT CAGCTTCGGCTCCAGAACTAGAGTTTATATAATCTGAATTGCGGATTGTGATATCTAACATCTGAGTGTTTAATCCTTAT TAAAAAAAAAAAAAACTGACATGGAGGACATATTGACAGTATGCCTACGTCCATATTGGAT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0433000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGAAGCAGCACGCAAATTGGTCTCCATACGACAACAATGGAGGATCTTGTGTTGCAATTGCTGGAGCCGATTACTG TGTCATTGCAGCGGATACCAGAATGTCCACCGGTTACAACATCCTCACTCGCGAGTACTCCAAAATCTCCCAACTAGCTG AGAAGAGTGTGATGGCTTCTTCTGGTTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTCTCTCCGCTAGGCATTTGATA TATCAACATCAACACAACAAGCAAATGAGCTGCCCTGCAATGGCTCAGTTGCTTTCAAACACTCTTTATTACAAACGCTT CTTCCCGTATTACTCTTTCAATGTTTTGGGTGGCCTTGACAGTGAAGGAAAGGGTTGTGTCTTCACATATGATGCTGTCG GTTCCTATGAGAGGGTTGGATATAGCTCTCAGGGTTCCGGATCCACACTCATTATGCCATTCCTTGACAACCAACTGAAG TCCCCTAGTCCACTCCTTTTGCCTGCCCAGGATGCTGTTACTCCACTGTCTGAAACCGAAGCAGTTGATCTGGTCAAAAC TGTTTTTGCATCCGCAACCGAGAGAGATATATACACTGGAGATAAGCTTGAAATTGTCATCCTAAATGCCAGTGGTATTC GTCGTGAATACATGGAACTCAGGAAAGACTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0433000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTKQHANWSPYDNNGGSCVAIAGADYCVIAADTRMSTGYNILTREYSKISQLAEKSVMASSGFQADVKALQKVLSARHLI YQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK SPSPLLLPAQDAVTPLSETEAVDLVKTVFASATERDIYTGDKLEIVILNASGIRREYMELRKD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd03757
8 223 216 1.11429E-129 –
Gene3D
G3DSA:3.60.20.10
9 223 215 1.3E-63
IPR029055
SUPERFAMILY
SSF56235
9 222 214 3.05E-53
IPR029055
PANTHER
PTHR11599
10 220 211 4.8E-113 –
PANTHER
PTHR11599:SF55
10 220 211 4.8E-113
IPR035202
Pfam
PF00227
13 207 195 3.3E-33
IPR001353
ProSiteProfiles
PS51476
15 208 194 48.774
IPR023333
ProSitePatterns
PS00854
19 66 48 -
IPR016050

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0433000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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