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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0433700 |
| Transcript ID | LotjaGi3g1v0433700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1442 family protein; TAIR: AT5G62280.1 DUF1442 family protein (DUF1442); Swiss-Prot: sp|Q9X232|GREA_THEMA Transcription elongation factor GreA; TrEMBL-Plants: tr|G7J167|G7J167_MEDTR DUF1442 family protein; Found in the gene: LotjaGi3g1v0433700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84516560..84518697) extracted from Lotus japonicus Gifu genome v1.2.
ATAATTATATAATATATATACTGTAGAATTAATGTAAAAGTACATTATAATCATAATATTAACATATAAAGACTCAAAAA CTGATACTAGCTTACAAACTCATGTTACAGGAGGCTTTTTTACTGTGTATATTAATGTAAAATTTTATTAGCTTCTCAGC AAACGGGTCAAATGAGTTTGCATCATGTTGTTTAATATAATGAACTGAGGGAAACTCAGATCAGATCTCAGATTCCATCT TATGATCTTAATCATCATGATATTAGCAAAGGAAAAGAAAAATTCCCTCAGGTATGCCATAACGTGTGTGTGTGTGTGTG CGCTTTTTGTATGTATATGAGAGAGAATCCACCATGCTAAATTTATGTATATTTATCTTTTAGCGAGACTTTCAACAAAA TTGGTGCCTGTTTGGACGGCACAATTCAGAGGAATCTACTACAATAGTAGCCTCCCCCAGTTGCTTACTTGCTTCAAGGC TCACAAGTCCATAAAAAGCTGAGTTTTTGAATATCTTAAAACAATTTAATTCATACAAGATTATTTTACTGATTACTTGT CAATTCTCATGTTTAAATCTATTGTTAATTGAACAAGTATTAAAAGAAAAACTCCTCTGTTTCTTCCTATACAGGTATGA TCCACCGGAGGTATTCGAGCCGGAAACATCTACATCGAGACTAGCTCTCCAGGATAGAGGTTTGTTCCATTGCATAAGAC TTGAACTCGAGACATTTCTCAAGGAGAATCAATTATGGAACACTTAAAATATTATATATGGTGGGGCTAACTCTCCTTTA GATGAAAATTAATTTGAACTGATATCAAAAGATGTACTCTCACAAAAATGAAGACATCTAGCTACATAATTGAGAGTAGG AAATTGTAACTTCATATGAGAAGAATTCAAATTTAAATTACACATGGGTTGATTCAATTAAATATTGGAGCCAGATACCA CATTTGTATATATAAATGCTGATAGGTACTCAACAACTTGAAGCGACAGTTTTCTCCCATCAAAGATAACTTCAAATTAA ACCCAAAGAAATCTGCAATAGCATGTCTGGTTGGTCCGCTGAGAAAGCCAAGAGAGCTTATATCCAGGCTCTCAAAATGG TAAGCAACAGGAGCATGTCTTATACTTTGAATCTGTTACACTCTAAGAAAATTATACTCTCCAATAAATGAAGATGGTTA TGCTTTGCCTTGTGTCACTCTCTTTTGTGACTTGACCTTTTTCTTTGATTTTACAGGCCAAAAAGGGCAAAGAACCTGAT GTAGCTGAGTTCATATCTGCCCTTGCAGCAGGCAATAATGCACAGCTCATGGTGGTGGCCAATGCCGGAGTGGCTGGGCC TGCCACACTGGCGCTGGCTGCAGCCGCACACCAGACCGCTGGCCGTGCGGTGTGTGTTTGTTGCGGGGAGAATGAATTGC AAGCATCAAAAAAGGCTCTGGGAGTTCATAGACATGGTCTTGAGTTTGTTGTGGGAGATGCTAAGTGCCTTCTCCTAGGT GATTACAAAGGAGCTGATTGTGTGCTAGTAGATTGTGACATCACTAGTGCAAAGGAAGTTTTTGTAGCAGCATTGAAAGG GGCTAACAAAGATGGGGCAATTGTGGTTGGGTATAATATTAGGCACAGGGCATCAAGGTGGAGGCAATTGAAGGCATCTT TTTTGCCTATAGGAGAAGGGTTGCTAGTGACCAAAATAGATCCAAATAATGTGAAGGATAATGACAATGTTGTTCAAAAA AGGAGGAGCCGTTGGATTGTTCAAGTAGATCATTGTACTGGAGAGGAACACATTTTTAGAGTCACCTCTCCACAGAAGAA AGTGCAGATTGAAGTTTAAGGCCATAAATATTGTGTAGATCTAACTGTATGTTAAGTTTTCAAGGCTTGAGTGTTTTTTC CCTTGTTATCTTTGGATTGTAAAATAGAATAAGAGCAATTTGCAATTTAGTAGTATTACTTTGTGTTTAGTTTATTGTGT GTAAAACATTTGGCCCGTAATTTTTTTGTCACTGGCCAAATTAAGAAGCCTTGAATGTAAATGCTGAAACAAAAGAGAAC TTCAGTGCAGAATATGATTCCAGTTACTAAATGTTGTGAAAATAAGTCCTAATGCGAC
CDS sequence (LotjaGi3g1v0433700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTGGCCAATGCCGGAGTGGCTGGGCCTGCCACACTGGCGCTGGCTGCAGCCGCACACCAGACCGCTGGCCGTGC GGTGTGTGTTTGTTGCGGGGAGAATGAATTGCAAGCATCAAAAAAGGCTCTGGGAGTTCATAGACATGGTCTTGAGTTTG TTGTGGGAGATGCTAAGTGCCTTCTCCTAGGTGATTACAAAGGAGCTGATTGTGTGCTAGTAGATTGTGACATCACTAGT GCAAAGGAAGTTTTTGTAGCAGCATTGAAAGGGGCTAACAAAGATGGGGCAATTGTGGTTGGGTATAATATTAGGCACAG GGCATCAAGGTGGAGGCAATTGAAGGCATCTTTTTTGCCTATAGGAGAAGGGTTGCTAGTGACCAAAATAGATCCAAATA ATGTGAAGGATAATGACAATGTTGTTCAAAAAAGGAGGAGCCGTTGGATTGTTCAAGTAGATCATTGTACTGGAGAGGAA CACATTTTTAGAGTCACCTCTCCACAGAAGAAAGTGCAGATTGAAGTTTAA
Protein sequence (LotjaGi3g1v0433700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVANAGVAGPATLALAAAAHQTAGRAVCVCCGENELQASKKALGVHRHGLEFVVGDAKCLLLGDYKGADCVLVDCDITS AKEVFVAALKGANKDGAIVVGYNIRHRASRWRQLKASFLPIGEGLLVTKIDPNNVKDNDNVVQKRRSRWIVQVDHCTGEE HIFRVTSPQKKVQIEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 171 | 171 | 1.0E-87 | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 1 | 171 | 171 | 1.0E-87 | ||
| Gene3D | 3 | 129 | 127 | 7.2E-8 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Pfam | 13 | 164 | 152 | 1.5E-12 | ||
| Phobius | 20 | 27 | 8 | - | – | |
| Phobius | 28 | 176 | 149 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0433700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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